Strain Fitness in Pseudomonas putida KT2440 around PP_4101

Experiment: 1,5-Pentanediol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4099 and PP_4100 are separated by 63 nucleotidesPP_4100 and PP_4101 are separated by 107 nucleotidesPP_4101 and PP_4102 are separated by 10 nucleotidesPP_4102 and PP_4103 are separated by 128 nucleotides PP_4099: PP_4099 - two-componenent system BarA/UvrY - regulatory subunit, at 4,635,117 to 4,635,755 _4099 PP_4100: PP_4100 - Transcriptional regulator, Cro/CI family, at 4,635,819 to 4,636,208 _4100 PP_4101: PP_4101 - Acetyltransferase, GNAT family, at 4,636,316 to 4,636,759 _4101 PP_4102: PP_4102 - conserved protein of unknown function, at 4,636,770 to 4,637,156 _4102 PP_4103: PP_4103 - Low-affinity inorganic phosphate transporter, at 4,637,285 to 4,638,901 _4103 Position (kb) 4636 4637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4635.383 kb on + strand, within PP_4099at 4635.383 kb on + strand, within PP_4099at 4635.383 kb on + strand, within PP_4099at 4635.383 kb on + strand, within PP_4099at 4635.383 kb on + strand, within PP_4099at 4635.384 kb on - strand, within PP_4099at 4635.384 kb on - strand, within PP_4099at 4635.384 kb on - strand, within PP_4099at 4635.385 kb on + strand, within PP_4099at 4635.385 kb on + strand, within PP_4099at 4635.385 kb on + strand, within PP_4099at 4635.385 kb on + strand, within PP_4099at 4635.386 kb on - strand, within PP_4099at 4635.386 kb on - strand, within PP_4099at 4635.386 kb on - strand, within PP_4099at 4635.386 kb on - strand, within PP_4099at 4635.386 kb on - strand, within PP_4099at 4635.386 kb on - strand, within PP_4099at 4635.454 kb on + strand, within PP_4099at 4635.522 kb on + strand, within PP_4099at 4635.522 kb on + strand, within PP_4099at 4635.523 kb on - strand, within PP_4099at 4635.523 kb on - strand, within PP_4099at 4635.704 kb on + strandat 4635.704 kb on + strandat 4635.704 kb on + strandat 4635.705 kb on - strandat 4635.705 kb on - strandat 4635.705 kb on - strandat 4635.705 kb on - strandat 4635.705 kb on - strandat 4635.705 kb on - strandat 4635.708 kb on - strandat 4635.708 kb on - strandat 4635.708 kb on - strandat 4635.708 kb on - strandat 4635.741 kb on + strandat 4635.741 kb on + strandat 4635.742 kb on - strandat 4635.750 kb on - strandat 4635.860 kb on + strand, within PP_4100at 4635.860 kb on + strand, within PP_4100at 4636.030 kb on + strand, within PP_4100at 4636.030 kb on + strand, within PP_4100at 4636.030 kb on + strand, within PP_4100at 4636.030 kb on + strand, within PP_4100at 4636.030 kb on + strand, within PP_4100at 4636.030 kb on + strand, within PP_4100at 4636.031 kb on - strand, within PP_4100at 4636.031 kb on - strand, within PP_4100at 4636.031 kb on - strand, within PP_4100at 4636.031 kb on - strand, within PP_4100at 4636.070 kb on - strand, within PP_4100at 4636.070 kb on - strand, within PP_4100at 4636.074 kb on + strand, within PP_4100at 4636.075 kb on - strand, within PP_4100at 4636.102 kb on + strand, within PP_4100at 4636.103 kb on - strand, within PP_4100at 4636.147 kb on - strand, within PP_4100at 4636.160 kb on + strand, within PP_4100at 4636.209 kb on - strandat 4636.229 kb on + strandat 4636.229 kb on + strandat 4636.241 kb on + strandat 4636.241 kb on + strandat 4636.242 kb on - strandat 4636.268 kb on + strandat 4636.268 kb on + strandat 4636.269 kb on - strandat 4636.269 kb on - strandat 4636.285 kb on + strandat 4636.285 kb on + strandat 4636.286 kb on - strandat 4636.321 kb on + strandat 4636.322 kb on - strandat 4636.322 kb on - strandat 4636.322 kb on - strandat 4636.328 kb on + strandat 4636.328 kb on + strandat 4636.329 kb on - strandat 4636.329 kb on - strandat 4636.329 kb on - strandat 4636.329 kb on - strandat 4636.336 kb on + strandat 4636.336 kb on + strandat 4636.337 kb on - strandat 4636.352 kb on + strandat 4636.353 kb on - strandat 4636.398 kb on + strand, within PP_4101at 4636.601 kb on + strand, within PP_4101at 4636.601 kb on + strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.602 kb on - strand, within PP_4101at 4636.678 kb on - strand, within PP_4101at 4636.678 kb on - strand, within PP_4101at 4636.702 kb on + strand, within PP_4101at 4636.751 kb on + strandat 4636.751 kb on + strandat 4636.751 kb on + strandat 4636.752 kb on - strandat 4636.752 kb on - strandat 4636.752 kb on - strandat 4636.780 kb on + strandat 4636.781 kb on - strandat 4636.880 kb on - strand, within PP_4102at 4636.880 kb on - strand, within PP_4102at 4636.925 kb on - strand, within PP_4102at 4637.009 kb on + strand, within PP_4102at 4637.101 kb on - strand, within PP_4102at 4637.101 kb on - strand, within PP_4102at 4637.134 kb on + strandat 4637.134 kb on + strandat 4637.134 kb on + strandat 4637.134 kb on + strandat 4637.135 kb on - strandat 4637.173 kb on + strandat 4637.174 kb on - strandat 4637.195 kb on + strandat 4637.196 kb on - strandat 4637.196 kb on - strandat 4637.236 kb on - strandat 4637.237 kb on + strandat 4637.316 kb on + strandat 4637.374 kb on - strandat 4637.374 kb on - strandat 4637.412 kb on - strandat 4637.568 kb on + strand, within PP_4103at 4637.568 kb on + strand, within PP_4103at 4637.568 kb on + strand, within PP_4103at 4637.569 kb on - strand, within PP_4103at 4637.569 kb on - strand, within PP_4103at 4637.570 kb on + strand, within PP_4103at 4637.570 kb on + strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.571 kb on - strand, within PP_4103at 4637.685 kb on + strand, within PP_4103at 4637.686 kb on - strand, within PP_4103at 4637.697 kb on + strand, within PP_4103at 4637.697 kb on + strand, within PP_4103at 4637.698 kb on - strandat 4637.698 kb on - strand, within PP_4103

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Per-strain Table

Position Strand Gene LocusTag Fraction 1,5-Pentanediol (C)
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4,635,383 + PP_4099 0.42 +3.4
4,635,383 + PP_4099 0.42 +3.4
4,635,383 + PP_4099 0.42 +3.6
4,635,383 + PP_4099 0.42 +3.4
4,635,383 + PP_4099 0.42 +3.7
4,635,384 - PP_4099 0.42 +3.5
4,635,384 - PP_4099 0.42 +3.4
4,635,384 - PP_4099 0.42 +3.4
4,635,385 + PP_4099 0.42 +3.5
4,635,385 + PP_4099 0.42 +3.6
4,635,385 + PP_4099 0.42 +3.4
4,635,385 + PP_4099 0.42 +3.4
4,635,386 - PP_4099 0.42 +3.3
4,635,386 - PP_4099 0.42 +3.4
4,635,386 - PP_4099 0.42 +3.6
4,635,386 - PP_4099 0.42 +3.4
4,635,386 - PP_4099 0.42 +3.6
4,635,386 - PP_4099 0.42 +3.7
4,635,454 + PP_4099 0.53 +3.6
4,635,522 + PP_4099 0.63 +3.3
4,635,522 + PP_4099 0.63 +3.7
4,635,523 - PP_4099 0.64 +3.5
4,635,523 - PP_4099 0.64 +3.6
4,635,704 + +3.4
4,635,704 + +3.5
4,635,704 + +3.5
4,635,705 - +3.7
4,635,705 - +3.6
4,635,705 - +3.5
4,635,705 - +3.3
4,635,705 - +3.6
4,635,705 - +3.3
4,635,708 - +3.5
4,635,708 - +3.4
4,635,708 - +3.6
4,635,708 - +3.6
4,635,741 + +3.5
4,635,741 + +3.7
4,635,742 - +3.5
4,635,750 - +3.5
4,635,860 + PP_4100 0.11 +1.4
4,635,860 + PP_4100 0.11 +1.3
4,636,030 + PP_4100 0.54 +0.9
4,636,030 + PP_4100 0.54 +0.4
4,636,030 + PP_4100 0.54 +0.8
4,636,030 + PP_4100 0.54 +0.9
4,636,030 + PP_4100 0.54 +0.8
4,636,030 + PP_4100 0.54 +0.6
4,636,031 - PP_4100 0.54 +0.3
4,636,031 - PP_4100 0.54 -0.4
4,636,031 - PP_4100 0.54 -0.3
4,636,031 - PP_4100 0.54 +0.7
4,636,070 - PP_4100 0.64 -0.6
4,636,070 - PP_4100 0.64 +0.2
4,636,074 + PP_4100 0.65 +0.2
4,636,075 - PP_4100 0.66 -0.3
4,636,102 + PP_4100 0.73 -1.5
4,636,103 - PP_4100 0.73 +0.7
4,636,147 - PP_4100 0.84 -0.6
4,636,160 + PP_4100 0.87 +0.8
4,636,209 - -0.8
4,636,229 + +0.6
4,636,229 + +0.7
4,636,241 + +1.3
4,636,241 + +0.5
4,636,242 - -1.3
4,636,268 + +0.8
4,636,268 + -0.5
4,636,269 - -1.0
4,636,269 - -0.6
4,636,285 + +1.5
4,636,285 + +0.0
4,636,286 - -1.0
4,636,321 + +1.0
4,636,322 - -1.4
4,636,322 - -1.0
4,636,322 - -0.6
4,636,328 + +1.4
4,636,328 + +0.7
4,636,329 - -3.9
4,636,329 - -0.9
4,636,329 - -0.5
4,636,329 - -0.7
4,636,336 + -0.2
4,636,336 + +1.2
4,636,337 - -1.7
4,636,352 + +0.0
4,636,353 - +0.4
4,636,398 + PP_4101 0.18 -0.0
4,636,601 + PP_4101 0.64 -0.6
4,636,601 + PP_4101 0.64 -0.4
4,636,602 - PP_4101 0.64 -0.3
4,636,602 - PP_4101 0.64 -0.6
4,636,602 - PP_4101 0.64 -2.1
4,636,602 - PP_4101 0.64 -1.4
4,636,602 - PP_4101 0.64 +1.4
4,636,678 - PP_4101 0.82 -1.7
4,636,678 - PP_4101 0.82 -2.1
4,636,702 + PP_4101 0.87 -0.8
4,636,751 + +0.0
4,636,751 + -0.4
4,636,751 + -0.3
4,636,752 - -1.1
4,636,752 - +1.1
4,636,752 - -1.8
4,636,780 + +0.4
4,636,781 - -0.4
4,636,880 - PP_4102 0.28 -0.8
4,636,880 - PP_4102 0.28 -0.0
4,636,925 - PP_4102 0.40 -0.2
4,637,009 + PP_4102 0.62 -0.5
4,637,101 - PP_4102 0.86 -0.7
4,637,101 - PP_4102 0.86 -0.1
4,637,134 + -0.0
4,637,134 + +0.1
4,637,134 + -0.7
4,637,134 + +0.2
4,637,135 - -0.6
4,637,173 + -0.1
4,637,174 - -0.9
4,637,195 + +2.1
4,637,196 - +0.7
4,637,196 - -0.4
4,637,236 - +0.5
4,637,237 + -0.8
4,637,316 + +0.5
4,637,374 - -3.1
4,637,374 - -0.2
4,637,412 - +0.2
4,637,568 + PP_4103 0.18 +0.1
4,637,568 + PP_4103 0.18 -0.5
4,637,568 + PP_4103 0.18 -0.4
4,637,569 - PP_4103 0.18 -1.1
4,637,569 - PP_4103 0.18 -0.7
4,637,570 + PP_4103 0.18 +0.2
4,637,570 + PP_4103 0.18 +0.1
4,637,571 - PP_4103 0.18 -0.9
4,637,571 - PP_4103 0.18 -1.1
4,637,571 - PP_4103 0.18 -0.6
4,637,571 - PP_4103 0.18 -0.5
4,637,571 - PP_4103 0.18 +0.2
4,637,571 - PP_4103 0.18 -0.8
4,637,571 - PP_4103 0.18 -0.6
4,637,685 + PP_4103 0.25 -0.8
4,637,686 - PP_4103 0.25 -1.8
4,637,697 + PP_4103 0.25 -0.6
4,637,697 + PP_4103 0.25 +0.2
4,637,698 - -0.3
4,637,698 - PP_4103 0.26 +0.4

Or see this region's nucleotide sequence