Experiment: 1,5-Pentanediol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0421 and PP_0422 overlap by 4 nucleotides PP_0422 and PP_0423 are separated by 147 nucleotides PP_0423 and PP_0424 overlap by 4 nucleotides
PP_0421: PP_0421 - Anthranilate phosphoribosyltransferase, at 509,981 to 511,030
_0421
PP_0422: PP_0422 - Indole-3-glycerol phosphate synthase, at 511,027 to 511,860
_0422
PP_0423: PP_0423 - conserved protein of unknown function, at 512,008 to 512,712
_0423
PP_0424: PP_0424 - DNA-binding transcriptional dual regulator, at 512,709 to 513,353
_0424
Position (kb) 511
512 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 510.032 kb on - strand at 510.093 kb on + strand, within PP_0421 at 510.093 kb on + strand, within PP_0421 at 510.316 kb on + strand, within PP_0421 at 510.374 kb on + strand, within PP_0421 at 510.374 kb on - strand, within PP_0421 at 510.514 kb on + strand, within PP_0421 at 510.514 kb on + strand, within PP_0421 at 510.515 kb on - strand, within PP_0421 at 510.529 kb on + strand, within PP_0421 at 510.529 kb on + strand, within PP_0421 at 510.529 kb on + strand, within PP_0421 at 510.530 kb on - strand, within PP_0421 at 510.722 kb on + strand, within PP_0421 at 510.723 kb on - strand, within PP_0421 at 510.874 kb on + strand, within PP_0421 at 510.875 kb on - strand, within PP_0421 at 510.875 kb on - strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.893 kb on + strand, within PP_0421 at 510.894 kb on - strand, within PP_0421 at 510.930 kb on + strand at 510.931 kb on - strand at 510.948 kb on + strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.949 kb on - strand at 510.998 kb on - strand at 510.998 kb on - strand at 510.998 kb on - strand at 511.005 kb on + strand at 511.005 kb on + strand at 511.006 kb on - strand at 511.279 kb on + strand, within PP_0422 at 511.279 kb on + strand, within PP_0422 at 511.327 kb on + strand, within PP_0422 at 511.348 kb on + strand, within PP_0422 at 511.349 kb on - strand, within PP_0422 at 511.349 kb on - strand, within PP_0422 at 511.587 kb on + strand, within PP_0422 at 511.587 kb on + strand, within PP_0422 at 511.705 kb on - strand, within PP_0422 at 511.902 kb on - strand at 511.931 kb on + strand at 511.931 kb on + strand at 511.997 kb on + strand at 511.997 kb on + strand at 511.997 kb on + strand at 511.998 kb on - strand at 511.998 kb on - strand at 512.425 kb on + strand, within PP_0423 at 512.645 kb on + strand at 512.677 kb on + strand at 512.687 kb on + strand at 512.687 kb on + strand at 512.688 kb on - strand at 512.688 kb on - strand at 512.688 kb on - strand at 512.710 kb on + strand at 512.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1,5-Pentanediol (C) remove 510,032 - -3.8 510,093 + PP_0421 0.11 -3.4 510,093 + PP_0421 0.11 -3.1 510,316 + PP_0421 0.32 -2.1 510,374 + PP_0421 0.37 -3.0 510,374 - PP_0421 0.37 -4.4 510,514 + PP_0421 0.51 -2.8 510,514 + PP_0421 0.51 -3.3 510,515 - PP_0421 0.51 -1.9 510,529 + PP_0421 0.52 -4.4 510,529 + PP_0421 0.52 -2.3 510,529 + PP_0421 0.52 -3.4 510,530 - PP_0421 0.52 -3.0 510,722 + PP_0421 0.71 -3.8 510,723 - PP_0421 0.71 -4.0 510,874 + PP_0421 0.85 -3.3 510,875 - PP_0421 0.85 -2.8 510,875 - PP_0421 0.85 -2.8 510,893 + PP_0421 0.87 -3.9 510,893 + PP_0421 0.87 -3.0 510,893 + PP_0421 0.87 -3.2 510,893 + PP_0421 0.87 -1.3 510,893 + PP_0421 0.87 -3.9 510,894 - PP_0421 0.87 -3.4 510,930 + -4.1 510,931 - -3.7 510,948 + -3.7 510,949 - -2.9 510,949 - -3.8 510,949 - -2.1 510,949 - -1.8 510,949 - -3.1 510,998 - -4.0 510,998 - -3.3 510,998 - -3.7 511,005 + -0.7 511,005 + -0.5 511,006 - -3.6 511,279 + PP_0422 0.30 -1.9 511,279 + PP_0422 0.30 -4.1 511,327 + PP_0422 0.36 -4.8 511,348 + PP_0422 0.38 -4.9 511,349 - PP_0422 0.39 -3.7 511,349 - PP_0422 0.39 -3.0 511,587 + PP_0422 0.67 -2.7 511,587 + PP_0422 0.67 -3.8 511,705 - PP_0422 0.81 -0.9 511,902 - +0.8 511,931 + -1.2 511,931 + +0.4 511,997 + -0.6 511,997 + +0.4 511,997 + +0.0 511,998 - +0.4 511,998 - -0.7 512,425 + PP_0423 0.59 +0.5 512,645 + -0.2 512,677 + -0.2 512,687 + -0.6 512,687 + +0.5 512,688 - +0.6 512,688 - +0.9 512,688 - -0.5 512,710 + +1.0 512,711 - +0.2
Or see this region's nucleotide sequence