Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6144 and Atu6145 overlap by 8 nucleotides Atu6145 and Atu6146 overlap by 1 nucleotides Atu6146 and Atu6147 are separated by 20 nucleotides
Atu6144: Atu6144 - agrocinopine phosphodiesterase, at 163,670 to 164,470
Atu6144
Atu6145: Atu6145 - arabinose phosphate phosphatase, at 164,463 to 165,281
Atu6145
Atu6146: Atu6146 - conserved hypothetical protein, at 165,281 to 165,739
Atu6146
Atu6147: Atu6147 - conserved hypothetical protein, at 165,760 to 166,743
Atu6147
Atu6148: Atu6148 - transposase, at 166,498 to 167,382
Atu6148
Position (kb) 165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.296 kb on + strand, within Atu6144 at 164.353 kb on + strand, within Atu6144 at 164.361 kb on - strand, within Atu6144 at 164.445 kb on + strand at 164.447 kb on + strand at 164.469 kb on + strand at 164.477 kb on - strand at 164.477 kb on - strand at 164.550 kb on - strand, within Atu6145 at 164.550 kb on - strand, within Atu6145 at 164.569 kb on + strand, within Atu6145 at 164.576 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.596 kb on - strand, within Atu6145 at 164.725 kb on + strand, within Atu6145 at 164.775 kb on + strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.783 kb on - strand, within Atu6145 at 164.788 kb on - strand, within Atu6145 at 164.891 kb on + strand, within Atu6145 at 164.899 kb on - strand, within Atu6145 at 164.906 kb on + strand, within Atu6145 at 164.932 kb on - strand, within Atu6145 at 164.986 kb on + strand, within Atu6145 at 164.994 kb on - strand, within Atu6145 at 165.056 kb on + strand, within Atu6145 at 165.062 kb on - strand, within Atu6145 at 165.085 kb on - strand, within Atu6145 at 165.155 kb on + strand, within Atu6145 at 165.159 kb on - strand, within Atu6145 at 165.163 kb on - strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.179 kb on + strand, within Atu6145 at 165.183 kb on - strand, within Atu6145 at 165.187 kb on - strand, within Atu6145 at 165.221 kb on - strand at 165.242 kb on + strand at 165.291 kb on + strand at 165.299 kb on - strand at 165.299 kb on - strand at 165.322 kb on + strand at 165.330 kb on - strand, within Atu6146 at 165.332 kb on + strand, within Atu6146 at 165.340 kb on - strand, within Atu6146 at 165.366 kb on + strand, within Atu6146 at 165.423 kb on + strand, within Atu6146 at 165.429 kb on + strand, within Atu6146 at 165.439 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146 at 165.449 kb on - strand, within Atu6146 at 165.534 kb on - strand, within Atu6146 at 165.591 kb on + strand, within Atu6146 at 165.594 kb on - strand, within Atu6146 at 165.600 kb on + strand, within Atu6146 at 165.613 kb on - strand, within Atu6146 at 165.686 kb on - strand, within Atu6146 at 165.754 kb on - strand at 165.777 kb on + strand at 165.836 kb on + strand at 165.874 kb on - strand, within Atu6147 at 165.975 kb on - strand, within Atu6147 at 166.050 kb on - strand, within Atu6147 at 166.078 kb on - strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.098 kb on + strand, within Atu6147 at 166.106 kb on - strand, within Atu6147 at 166.140 kb on - strand, within Atu6147 at 166.142 kb on + strand, within Atu6147 at 166.150 kb on - strand, within Atu6147 at 166.203 kb on + strand, within Atu6147 at 166.211 kb on - strand, within Atu6147 at 166.250 kb on + strand, within Atu6147 at 166.258 kb on - strand, within Atu6147 at 166.282 kb on + strand, within Atu6147 at 166.282 kb on + strand, within Atu6147 at 166.315 kb on + strand, within Atu6147 at 166.337 kb on + strand, within Atu6147 at 166.380 kb on - strand, within Atu6147 at 166.412 kb on + strand, within Atu6147 at 166.532 kb on + strand at 166.564 kb on + strand at 166.592 kb on - strand at 166.607 kb on - strand at 166.613 kb on + strand at 166.614 kb on + strand at 166.634 kb on + strand at 166.642 kb on - strand at 166.657 kb on + strand at 166.662 kb on + strand at 166.664 kb on - strand at 166.670 kb on - strand at 166.670 kb on - strand at 166.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 164,296 + Atu6144 0.78 -0.7 164,353 + Atu6144 0.85 -0.3 164,361 - Atu6144 0.86 +0.3 164,445 + -0.0 164,447 + +1.3 164,469 + -1.4 164,477 - +0.2 164,477 - -0.5 164,550 - Atu6145 0.11 +0.0 164,550 - Atu6145 0.11 -0.2 164,569 + Atu6145 0.13 -0.2 164,576 - Atu6145 0.14 -0.2 164,596 - Atu6145 0.16 +0.5 164,596 - Atu6145 0.16 -0.3 164,725 + Atu6145 0.32 +2.2 164,775 + Atu6145 0.38 +0.2 164,783 - Atu6145 0.39 +0.1 164,783 - Atu6145 0.39 -0.4 164,788 - Atu6145 0.40 -0.8 164,891 + Atu6145 0.52 +0.5 164,899 - Atu6145 0.53 +0.3 164,906 + Atu6145 0.54 +0.8 164,932 - Atu6145 0.57 -0.2 164,986 + Atu6145 0.64 -0.2 164,994 - Atu6145 0.65 +0.6 165,056 + Atu6145 0.72 +1.2 165,062 - Atu6145 0.73 +0.0 165,085 - Atu6145 0.76 +0.1 165,155 + Atu6145 0.84 -0.0 165,159 - Atu6145 0.85 +0.0 165,163 - Atu6145 0.85 +0.8 165,179 + Atu6145 0.87 -0.9 165,179 + Atu6145 0.87 +0.3 165,183 - Atu6145 0.88 +0.3 165,187 - Atu6145 0.88 +0.1 165,221 - -0.6 165,242 + +0.4 165,291 + +0.9 165,299 - -0.2 165,299 - -0.5 165,322 + +0.0 165,330 - Atu6146 0.11 +0.1 165,332 + Atu6146 0.11 -0.2 165,340 - Atu6146 0.13 -0.1 165,366 + Atu6146 0.19 -0.7 165,423 + Atu6146 0.31 +0.2 165,429 + Atu6146 0.32 +0.6 165,439 - Atu6146 0.34 -0.4 165,449 - Atu6146 0.37 +1.0 165,449 - Atu6146 0.37 +0.3 165,534 - Atu6146 0.55 +0.0 165,591 + Atu6146 0.68 +0.0 165,594 - Atu6146 0.68 -0.1 165,600 + Atu6146 0.69 -0.6 165,613 - Atu6146 0.72 -0.6 165,686 - Atu6146 0.88 +0.8 165,754 - -0.7 165,777 + +0.0 165,836 + -0.2 165,874 - Atu6147 0.12 -0.1 165,975 - Atu6147 0.22 -0.7 166,050 - Atu6147 0.29 -0.0 166,078 - Atu6147 0.32 -0.1 166,098 + Atu6147 0.34 -0.4 166,098 + Atu6147 0.34 +0.9 166,098 + Atu6147 0.34 -1.3 166,106 - Atu6147 0.35 -1.4 166,140 - Atu6147 0.39 +0.6 166,142 + Atu6147 0.39 +0.5 166,150 - Atu6147 0.40 +0.1 166,203 + Atu6147 0.45 +1.3 166,211 - Atu6147 0.46 -0.0 166,250 + Atu6147 0.50 +0.4 166,258 - Atu6147 0.51 -0.0 166,282 + Atu6147 0.53 -1.9 166,282 + Atu6147 0.53 +0.5 166,315 + Atu6147 0.56 -0.4 166,337 + Atu6147 0.59 +0.3 166,380 - Atu6147 0.63 +0.2 166,412 + Atu6147 0.66 -0.1 166,532 + -0.6 166,564 + -0.9 166,592 - +0.6 166,607 - -0.1 166,613 + -0.4 166,614 + +0.8 166,634 + -0.3 166,642 - +0.9 166,657 + +0.1 166,662 + -0.2 166,664 - -0.9 166,670 - +0.2 166,670 - +0.6 166,692 - +0.5
Or see this region's nucleotide sequence