Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5479 and Atu5480 are separated by 13 nucleotides Atu5480 and Atu5481 overlap by 4 nucleotides Atu5481 and Atu5482 are separated by 33 nucleotides
Atu5479: Atu5479 - acetylornithine deacetylase, at 471,138 to 472,301
Atu5479
Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079
Atu5480
Atu5481: Atu5481 - ABC transporter membrane spanning protein, at 473,076 to 473,804
Atu5481
Atu5482: Atu5482 - ABC transporter substrate binding protein (amino acid), at 473,838 to 474,647
Atu5482
Position (kb) 473
474 Strain fitness (log2 ratio) -1
0
1
2 at 472.163 kb on + strand, within Atu5479 at 472.318 kb on + strand at 472.498 kb on - strand, within Atu5480 at 472.518 kb on - strand, within Atu5480 at 472.518 kb on - strand, within Atu5480 at 472.537 kb on - strand, within Atu5480 at 472.542 kb on + strand, within Atu5480 at 472.557 kb on - strand, within Atu5480 at 472.564 kb on + strand, within Atu5480 at 472.727 kb on + strand, within Atu5480 at 472.762 kb on + strand, within Atu5480 at 472.896 kb on + strand, within Atu5480 at 472.904 kb on - strand, within Atu5480 at 472.913 kb on + strand, within Atu5480 at 472.946 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 473.121 kb on + strand at 473.178 kb on - strand, within Atu5481 at 473.243 kb on - strand, within Atu5481 at 473.398 kb on + strand, within Atu5481 at 473.398 kb on - strand, within Atu5481 at 473.406 kb on - strand, within Atu5481 at 473.406 kb on - strand, within Atu5481 at 473.474 kb on + strand, within Atu5481 at 473.500 kb on - strand, within Atu5481 at 473.512 kb on + strand, within Atu5481 at 473.603 kb on + strand, within Atu5481 at 473.611 kb on - strand, within Atu5481 at 473.611 kb on - strand, within Atu5481 at 473.688 kb on + strand, within Atu5481 at 473.736 kb on - strand at 473.752 kb on - strand at 473.756 kb on + strand at 473.781 kb on + strand at 473.844 kb on - strand at 473.964 kb on - strand, within Atu5482 at 474.014 kb on + strand, within Atu5482 at 474.018 kb on - strand, within Atu5482 at 474.026 kb on + strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.036 kb on + strand, within Atu5482 at 474.036 kb on + strand, within Atu5482 at 474.036 kb on + strand, within Atu5482 at 474.039 kb on - strand, within Atu5482 at 474.044 kb on - strand, within Atu5482 at 474.044 kb on - strand, within Atu5482 at 474.049 kb on - strand, within Atu5482 at 474.084 kb on + strand, within Atu5482 at 474.096 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.116 kb on - strand, within Atu5482 at 474.116 kb on - strand, within Atu5482 at 474.116 kb on - strand, within Atu5482 at 474.135 kb on - strand, within Atu5482 at 474.157 kb on + strand, within Atu5482 at 474.157 kb on + strand, within Atu5482 at 474.157 kb on + strand, within Atu5482 at 474.159 kb on - strand, within Atu5482 at 474.160 kb on - strand, within Atu5482 at 474.165 kb on - strand, within Atu5482 at 474.165 kb on - strand, within Atu5482 at 474.268 kb on + strand, within Atu5482 at 474.394 kb on + strand, within Atu5482 at 474.411 kb on - strand, within Atu5482 at 474.413 kb on - strand, within Atu5482 at 474.436 kb on + strand, within Atu5482 at 474.436 kb on + strand, within Atu5482 at 474.463 kb on - strand, within Atu5482 at 474.547 kb on - strand, within Atu5482 at 474.568 kb on + strand at 474.586 kb on - strand at 474.663 kb on - strand at 474.672 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 472,163 + Atu5479 0.88 -0.2 472,318 + -0.0 472,498 - Atu5480 0.24 -0.1 472,518 - Atu5480 0.27 -0.3 472,518 - Atu5480 0.27 -1.0 472,537 - Atu5480 0.29 +1.5 472,542 + Atu5480 0.30 -0.7 472,557 - Atu5480 0.32 -0.1 472,564 + Atu5480 0.33 +1.8 472,727 + Atu5480 0.54 -0.2 472,762 + Atu5480 0.58 -0.8 472,896 + Atu5480 0.76 +0.5 472,904 - Atu5480 0.77 +1.1 472,913 + Atu5480 0.78 -0.7 472,946 - Atu5480 0.82 -0.2 472,979 - Atu5480 0.87 +0.2 472,979 - Atu5480 0.87 -0.9 473,121 + -0.3 473,178 - Atu5481 0.14 +0.6 473,243 - Atu5481 0.23 +0.3 473,398 + Atu5481 0.44 +0.9 473,398 - Atu5481 0.44 +0.1 473,406 - Atu5481 0.45 -0.1 473,406 - Atu5481 0.45 -0.1 473,474 + Atu5481 0.55 +0.4 473,500 - Atu5481 0.58 +0.1 473,512 + Atu5481 0.60 -0.1 473,603 + Atu5481 0.72 +0.4 473,611 - Atu5481 0.73 -0.2 473,611 - Atu5481 0.73 -0.5 473,688 + Atu5481 0.84 -0.1 473,736 - +0.3 473,752 - +0.1 473,756 + -0.9 473,781 + -0.2 473,844 - +0.5 473,964 - Atu5482 0.16 +0.3 474,014 + Atu5482 0.22 +0.4 474,018 - Atu5482 0.22 +0.6 474,026 + Atu5482 0.23 -0.6 474,034 - Atu5482 0.24 +0.4 474,034 - Atu5482 0.24 +0.2 474,034 - Atu5482 0.24 -0.1 474,034 - Atu5482 0.24 +0.6 474,036 + Atu5482 0.24 +1.2 474,036 + Atu5482 0.24 +0.2 474,036 + Atu5482 0.24 -0.2 474,039 - Atu5482 0.25 +0.2 474,044 - Atu5482 0.25 +1.2 474,044 - Atu5482 0.25 -0.2 474,049 - Atu5482 0.26 -0.8 474,084 + Atu5482 0.30 -0.1 474,096 + Atu5482 0.32 +0.0 474,108 + Atu5482 0.33 +0.0 474,108 + Atu5482 0.33 -0.3 474,108 + Atu5482 0.33 +0.4 474,108 + Atu5482 0.33 -0.2 474,108 + Atu5482 0.33 +0.1 474,108 + Atu5482 0.33 -0.9 474,116 - Atu5482 0.34 -0.2 474,116 - Atu5482 0.34 +0.3 474,116 - Atu5482 0.34 +1.8 474,135 - Atu5482 0.37 +0.8 474,157 + Atu5482 0.39 +0.1 474,157 + Atu5482 0.39 +1.3 474,157 + Atu5482 0.39 +0.2 474,159 - Atu5482 0.40 -0.1 474,160 - Atu5482 0.40 -1.7 474,165 - Atu5482 0.40 +0.7 474,165 - Atu5482 0.40 -0.0 474,268 + Atu5482 0.53 -0.2 474,394 + Atu5482 0.69 +0.3 474,411 - Atu5482 0.71 +0.3 474,413 - Atu5482 0.71 -0.2 474,436 + Atu5482 0.74 -0.7 474,436 + Atu5482 0.74 -0.0 474,463 - Atu5482 0.77 -0.4 474,547 - Atu5482 0.88 -0.8 474,568 + -0.5 474,586 - +0.3 474,663 - +0.2 474,672 + -0.1
Or see this region's nucleotide sequence