Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1445 and Atu1446 overlap by 4 nucleotides Atu1446 and Atu1447 are separated by 148 nucleotides
Atu1445: Atu1445 - two component sensor kinase, at 1,438,154 to 1,439,302
Atu1445
Atu1446: Atu1446 - two component response regulator, at 1,439,299 to 1,440,750
Atu1446
Atu1447: Atu1447 - two component sensor kinase, at 1,440,899 to 1,443,160
Atu1447
Position (kb)
1439
1440
1441 Strain fitness (log2 ratio)
-2
-1
0
1 at 1438.302 kb on + strand, within Atu1445 at 1438.366 kb on + strand, within Atu1445 at 1438.366 kb on + strand, within Atu1445 at 1438.436 kb on + strand, within Atu1445 at 1438.696 kb on + strand, within Atu1445 at 1438.701 kb on + strand, within Atu1445 at 1438.790 kb on + strand, within Atu1445 at 1438.819 kb on + strand, within Atu1445 at 1439.042 kb on + strand, within Atu1445 at 1439.069 kb on - strand, within Atu1445 at 1439.133 kb on + strand, within Atu1445 at 1439.283 kb on + strand at 1439.347 kb on + strand at 1439.347 kb on + strand at 1439.366 kb on + strand at 1439.486 kb on + strand, within Atu1446 at 1439.897 kb on - strand, within Atu1446 at 1440.104 kb on + strand, within Atu1446 at 1440.337 kb on + strand, within Atu1446 at 1440.659 kb on - strand at 1440.734 kb on + strand at 1440.855 kb on + strand at 1440.863 kb on - strand at 1441.684 kb on + strand, within Atu1447 at 1441.684 kb on + strand, within Atu1447
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,438,302 + Atu1445 0.13 -2.3 1,438,366 + Atu1445 0.18 -0.8 1,438,366 + Atu1445 0.18 +0.4 1,438,436 + Atu1445 0.25 -0.9 1,438,696 + Atu1445 0.47 -0.2 1,438,701 + Atu1445 0.48 -0.7 1,438,790 + Atu1445 0.55 -0.5 1,438,819 + Atu1445 0.58 -0.8 1,439,042 + Atu1445 0.77 +1.0 1,439,069 - Atu1445 0.80 -0.0 1,439,133 + Atu1445 0.85 -0.4 1,439,283 + -0.3 1,439,347 + +0.6 1,439,347 + -0.7 1,439,366 + -0.3 1,439,486 + Atu1446 0.13 +1.4 1,439,897 - Atu1446 0.41 +1.0 1,440,104 + Atu1446 0.55 -2.7 1,440,337 + Atu1446 0.71 -1.6 1,440,659 - +0.7 1,440,734 + -0.5 1,440,855 + -1.1 1,440,863 - -0.9 1,441,684 + Atu1447 0.35 -0.2 1,441,684 + Atu1447 0.35 +0.7
Or see this region's nucleotide sequence