Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0491 and Atu0492 are separated by 26 nucleotides Atu0492 and Atu0493 are separated by 107 nucleotides Atu0493 and Atu0494 are separated by 259 nucleotides
Atu0491: Atu0491 - hypothetical protein, at 478,100 to 478,741
Atu0491
Atu0492: Atu0492 - hypothetical protein, at 478,768 to 479,229
Atu0492
Atu0493: Atu0493 - hypothetical protein, at 479,337 to 479,840
Atu0493
Atu0494: Atu0494 - large atp-dependant helicase-related protein, at 480,100 to 482,478
Atu0494
Position (kb) 479
480 Strain fitness (log2 ratio) -1
0
1 at 478.376 kb on + strand, within Atu0491 at 478.464 kb on + strand, within Atu0491 at 478.482 kb on - strand, within Atu0491 at 478.619 kb on + strand, within Atu0491 at 478.627 kb on - strand, within Atu0491 at 478.648 kb on + strand, within Atu0491 at 478.749 kb on - strand at 478.842 kb on - strand, within Atu0492 at 478.920 kb on - strand, within Atu0492 at 478.950 kb on + strand, within Atu0492 at 478.966 kb on - strand, within Atu0492 at 478.968 kb on - strand, within Atu0492 at 478.997 kb on - strand, within Atu0492 at 479.022 kb on - strand, within Atu0492 at 479.119 kb on - strand, within Atu0492 at 479.149 kb on + strand, within Atu0492 at 479.157 kb on - strand, within Atu0492 at 479.157 kb on - strand, within Atu0492 at 479.196 kb on - strand at 479.243 kb on + strand at 479.261 kb on - strand at 479.262 kb on - strand at 479.284 kb on + strand at 479.335 kb on + strand at 479.340 kb on + strand at 479.398 kb on - strand, within Atu0493 at 479.532 kb on - strand, within Atu0493 at 479.545 kb on - strand, within Atu0493 at 479.613 kb on - strand, within Atu0493 at 479.623 kb on - strand, within Atu0493 at 479.814 kb on - strand at 479.856 kb on - strand at 480.125 kb on - strand at 480.228 kb on - strand at 480.295 kb on - strand at 480.386 kb on + strand, within Atu0494 at 480.386 kb on + strand, within Atu0494 at 480.539 kb on + strand, within Atu0494 at 480.539 kb on + strand, within Atu0494 at 480.547 kb on - strand, within Atu0494 at 480.649 kb on + strand, within Atu0494 at 480.739 kb on + strand, within Atu0494 at 480.768 kb on + strand, within Atu0494 at 480.785 kb on - strand, within Atu0494
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 478,376 + Atu0491 0.43 -0.0 478,464 + Atu0491 0.57 +0.5 478,482 - Atu0491 0.60 -0.7 478,619 + Atu0491 0.81 -0.6 478,627 - Atu0491 0.82 -0.1 478,648 + Atu0491 0.85 -0.5 478,749 - -0.7 478,842 - Atu0492 0.16 +0.1 478,920 - Atu0492 0.33 -0.2 478,950 + Atu0492 0.39 -0.1 478,966 - Atu0492 0.43 -0.6 478,968 - Atu0492 0.43 +1.0 478,997 - Atu0492 0.50 +1.7 479,022 - Atu0492 0.55 -0.9 479,119 - Atu0492 0.76 +0.6 479,149 + Atu0492 0.82 -0.3 479,157 - Atu0492 0.84 -0.4 479,157 - Atu0492 0.84 -0.3 479,196 - +0.1 479,243 + -0.7 479,261 - +0.1 479,262 - +0.1 479,284 + -0.5 479,335 + +0.1 479,340 + +0.5 479,398 - Atu0493 0.12 -0.5 479,532 - Atu0493 0.39 -0.3 479,545 - Atu0493 0.41 -0.7 479,613 - Atu0493 0.55 -0.8 479,623 - Atu0493 0.57 -0.7 479,814 - -0.4 479,856 - -0.7 480,125 - +0.8 480,228 - +0.1 480,295 - +0.1 480,386 + Atu0494 0.12 +0.3 480,386 + Atu0494 0.12 -0.0 480,539 + Atu0494 0.18 +0.4 480,539 + Atu0494 0.18 +0.2 480,547 - Atu0494 0.19 -0.2 480,649 + Atu0494 0.23 -0.4 480,739 + Atu0494 0.27 -0.3 480,768 + Atu0494 0.28 -0.1 480,785 - Atu0494 0.29 +0.4
Or see this region's nucleotide sequence