Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4749 and PP_4750 overlap by 4 nucleotides PP_4750 and PP_4751 overlap by 1 nucleotides PP_4751 and PP_4752 are separated by 13 nucleotides
PP_4749: PP_4749 - Amino acid ABC transporter, permease protein, at 5,405,310 to 5,405,969
_4749
PP_4750: PP_4750 - Amino acid ABC transporter, permease protein, at 5,405,966 to 5,406,607
_4750
PP_4751: PP_4751 - Amino acid ABC transporter, ATP-binding protein, at 5,406,607 to 5,407,416
_4751
PP_4752: PP_4752 - putative Xaa-Pro aminopeptidase, at 5,407,430 to 5,408,737
_4752
Position (kb) 5406
5407
5408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5405.665 kb on + strand, within PP_4749 at 5405.666 kb on - strand, within PP_4749 at 5405.752 kb on + strand, within PP_4749 at 5405.752 kb on + strand, within PP_4749 at 5405.753 kb on - strand, within PP_4749 at 5405.753 kb on - strand, within PP_4749 at 5405.753 kb on - strand, within PP_4749 at 5406.042 kb on + strand, within PP_4750 at 5406.042 kb on + strand, within PP_4750 at 5406.174 kb on + strand, within PP_4750 at 5406.174 kb on + strand, within PP_4750 at 5406.175 kb on - strand, within PP_4750 at 5406.175 kb on - strand, within PP_4750 at 5406.175 kb on - strand, within PP_4750 at 5406.200 kb on - strand, within PP_4750 at 5406.253 kb on + strand, within PP_4750 at 5406.253 kb on + strand, within PP_4750 at 5406.253 kb on + strand, within PP_4750 at 5406.254 kb on - strand, within PP_4750 at 5406.261 kb on + strand, within PP_4750 at 5406.310 kb on - strand, within PP_4750 at 5406.323 kb on - strand, within PP_4750 at 5406.323 kb on - strand, within PP_4750 at 5406.323 kb on - strand, within PP_4750 at 5406.382 kb on + strand, within PP_4750 at 5406.382 kb on + strand, within PP_4750 at 5406.383 kb on - strand, within PP_4750 at 5406.383 kb on - strand, within PP_4750 at 5406.383 kb on - strand, within PP_4750 at 5406.383 kb on - strand, within PP_4750 at 5406.384 kb on + strand, within PP_4750 at 5406.384 kb on + strand, within PP_4750 at 5406.385 kb on - strand, within PP_4750 at 5406.385 kb on - strand, within PP_4750 at 5406.527 kb on + strand, within PP_4750 at 5406.572 kb on + strand at 5406.573 kb on - strand at 5406.777 kb on + strand, within PP_4751 at 5406.777 kb on + strand, within PP_4751 at 5406.778 kb on - strand, within PP_4751 at 5406.904 kb on - strand, within PP_4751 at 5406.938 kb on + strand, within PP_4751 at 5406.939 kb on - strand, within PP_4751 at 5407.095 kb on + strand, within PP_4751 at 5407.095 kb on + strand, within PP_4751 at 5407.095 kb on + strand, within PP_4751 at 5407.096 kb on - strand, within PP_4751 at 5407.096 kb on - strand, within PP_4751 at 5407.096 kb on - strand, within PP_4751 at 5407.224 kb on + strand, within PP_4751 at 5407.323 kb on + strand, within PP_4751 at 5407.542 kb on + strand at 5407.543 kb on - strand at 5407.615 kb on - strand, within PP_4752 at 5407.629 kb on + strand, within PP_4752 at 5407.668 kb on + strand, within PP_4752 at 5407.668 kb on + strand, within PP_4752 at 5407.669 kb on - strand, within PP_4752 at 5407.669 kb on - strand, within PP_4752 at 5408.328 kb on + strand, within PP_4752 at 5408.328 kb on + strand, within PP_4752 at 5408.329 kb on - strand, within PP_4752 at 5408.329 kb on - strand, within PP_4752
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 5,405,665 + PP_4749 0.54 -0.1 5,405,666 - PP_4749 0.54 -0.2 5,405,752 + PP_4749 0.67 -0.9 5,405,752 + PP_4749 0.67 +0.9 5,405,753 - PP_4749 0.67 -0.0 5,405,753 - PP_4749 0.67 -0.6 5,405,753 - PP_4749 0.67 -0.4 5,406,042 + PP_4750 0.12 +0.1 5,406,042 + PP_4750 0.12 +0.2 5,406,174 + PP_4750 0.32 +0.7 5,406,174 + PP_4750 0.32 +0.2 5,406,175 - PP_4750 0.33 -0.4 5,406,175 - PP_4750 0.33 +0.3 5,406,175 - PP_4750 0.33 -1.1 5,406,200 - PP_4750 0.36 -0.9 5,406,253 + PP_4750 0.45 -2.1 5,406,253 + PP_4750 0.45 +1.8 5,406,253 + PP_4750 0.45 -0.1 5,406,254 - PP_4750 0.45 -0.3 5,406,261 + PP_4750 0.46 -0.9 5,406,310 - PP_4750 0.54 +0.5 5,406,323 - PP_4750 0.56 -0.9 5,406,323 - PP_4750 0.56 +1.3 5,406,323 - PP_4750 0.56 +0.5 5,406,382 + PP_4750 0.65 +0.1 5,406,382 + PP_4750 0.65 -0.3 5,406,383 - PP_4750 0.65 +0.5 5,406,383 - PP_4750 0.65 +1.2 5,406,383 - PP_4750 0.65 -0.4 5,406,383 - PP_4750 0.65 -0.2 5,406,384 + PP_4750 0.65 +0.3 5,406,384 + PP_4750 0.65 +0.7 5,406,385 - PP_4750 0.65 +0.3 5,406,385 - PP_4750 0.65 +0.1 5,406,527 + PP_4750 0.87 -2.3 5,406,572 + -0.4 5,406,573 - -0.4 5,406,777 + PP_4751 0.21 +1.1 5,406,777 + PP_4751 0.21 +0.5 5,406,778 - PP_4751 0.21 +0.7 5,406,904 - PP_4751 0.37 +0.8 5,406,938 + PP_4751 0.41 +1.0 5,406,939 - PP_4751 0.41 -0.1 5,407,095 + PP_4751 0.60 +0.6 5,407,095 + PP_4751 0.60 -0.1 5,407,095 + PP_4751 0.60 -1.4 5,407,096 - PP_4751 0.60 +1.0 5,407,096 - PP_4751 0.60 -0.4 5,407,096 - PP_4751 0.60 +1.3 5,407,224 + PP_4751 0.76 +0.5 5,407,323 + PP_4751 0.88 -1.4 5,407,542 + -0.2 5,407,543 - +0.2 5,407,615 - PP_4752 0.14 -1.0 5,407,629 + PP_4752 0.15 -1.1 5,407,668 + PP_4752 0.18 +0.6 5,407,668 + PP_4752 0.18 +0.4 5,407,669 - PP_4752 0.18 +0.7 5,407,669 - PP_4752 0.18 +1.1 5,408,328 + PP_4752 0.69 +0.3 5,408,328 + PP_4752 0.69 +0.1 5,408,329 - PP_4752 0.69 +0.6 5,408,329 - PP_4752 0.69 -0.6
Or see this region's nucleotide sequence