Experiment: Vanillin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4991 and PP_4992 are separated by 47 nucleotides PP_4992 and PP_4993 are separated by 238 nucleotides PP_4993 and PP_4994 are separated by 91 nucleotides
PP_4991: PP_4991 - Protein PilH, at 5,689,528 to 5,689,893
_4991
PP_4992: PP_4992 - Protein PilG, at 5,689,941 to 5,690,342
_4992
PP_4993: PP_4993 - Glutathione synthetase, at 5,690,581 to 5,691,534
_4993
PP_4994: PP_4994 - conserved protein of unknown function, at 5,691,626 to 5,692,531
_4994
Position (kb) 5690
5691
5692 Strain fitness (log2 ratio) -1
0
1
2
3 at 5689.668 kb on + strand, within PP_4991 at 5689.851 kb on - strand, within PP_4991 at 5689.916 kb on - strand at 5689.916 kb on - strand at 5689.916 kb on - strand at 5690.436 kb on - strand at 5690.466 kb on + strand at 5690.692 kb on + strand, within PP_4993 at 5690.692 kb on + strand, within PP_4993 at 5690.692 kb on + strand, within PP_4993 at 5690.692 kb on + strand, within PP_4993 at 5690.693 kb on - strand, within PP_4993 at 5690.693 kb on - strand, within PP_4993 at 5690.713 kb on + strand, within PP_4993 at 5690.713 kb on + strand, within PP_4993 at 5690.714 kb on - strand, within PP_4993 at 5690.714 kb on - strand, within PP_4993 at 5690.881 kb on + strand, within PP_4993 at 5690.881 kb on + strand, within PP_4993 at 5690.882 kb on - strand, within PP_4993 at 5690.882 kb on - strand, within PP_4993 at 5690.913 kb on - strand, within PP_4993 at 5690.922 kb on - strand, within PP_4993 at 5691.181 kb on + strand, within PP_4993 at 5691.245 kb on - strand, within PP_4993 at 5691.245 kb on - strand, within PP_4993 at 5691.415 kb on + strand, within PP_4993 at 5691.416 kb on - strand, within PP_4993 at 5691.473 kb on - strand at 5691.473 kb on - strand at 5691.473 kb on - strand at 5691.521 kb on + strand at 5691.521 kb on + strand at 5691.522 kb on - strand at 5691.550 kb on - strand at 5691.550 kb on - strand at 5691.550 kb on - strand at 5691.557 kb on + strand at 5691.568 kb on - strand at 5691.568 kb on - strand at 5691.581 kb on + strand at 5691.581 kb on + strand at 5691.620 kb on + strand at 5691.621 kb on - strand at 5691.621 kb on - strand at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.163 kb on + strand, within PP_4994 at 5692.164 kb on - strand, within PP_4994 at 5692.164 kb on - strand, within PP_4994 at 5692.229 kb on + strand, within PP_4994 at 5692.307 kb on + strand, within PP_4994 at 5692.355 kb on + strand, within PP_4994 at 5692.356 kb on - strand, within PP_4994 at 5692.369 kb on - strand, within PP_4994 at 5692.458 kb on + strand at 5692.459 kb on - strand at 5692.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin (C) remove 5,689,668 + PP_4991 0.38 +0.5 5,689,851 - PP_4991 0.88 +2.0 5,689,916 - -1.2 5,689,916 - -1.0 5,689,916 - -0.5 5,690,436 - -0.1 5,690,466 + +1.4 5,690,692 + PP_4993 0.12 -1.3 5,690,692 + PP_4993 0.12 -0.6 5,690,692 + PP_4993 0.12 -0.2 5,690,692 + PP_4993 0.12 +2.0 5,690,693 - PP_4993 0.12 -0.5 5,690,693 - PP_4993 0.12 -0.7 5,690,713 + PP_4993 0.14 -0.2 5,690,713 + PP_4993 0.14 +0.6 5,690,714 - PP_4993 0.14 +0.6 5,690,714 - PP_4993 0.14 +1.4 5,690,881 + PP_4993 0.31 +1.4 5,690,881 + PP_4993 0.31 +0.2 5,690,882 - PP_4993 0.32 -0.5 5,690,882 - PP_4993 0.32 -0.9 5,690,913 - PP_4993 0.35 -1.6 5,690,922 - PP_4993 0.36 -0.8 5,691,181 + PP_4993 0.63 -1.0 5,691,245 - PP_4993 0.70 -0.5 5,691,245 - PP_4993 0.70 +0.6 5,691,415 + PP_4993 0.87 -1.0 5,691,416 - PP_4993 0.88 -1.0 5,691,473 - -0.9 5,691,473 - +1.0 5,691,473 - -0.9 5,691,521 + +0.1 5,691,521 + -0.1 5,691,522 - -0.3 5,691,550 - -0.2 5,691,550 - +0.4 5,691,550 - +1.2 5,691,557 + -0.3 5,691,568 - +0.5 5,691,568 - -0.2 5,691,581 + -0.2 5,691,581 + -0.8 5,691,620 + -1.2 5,691,621 - +2.6 5,691,621 - +2.4 5,692,163 + PP_4994 0.59 +2.7 5,692,163 + PP_4994 0.59 +2.1 5,692,163 + PP_4994 0.59 +1.8 5,692,163 + PP_4994 0.59 +2.7 5,692,164 - PP_4994 0.59 +2.3 5,692,164 - PP_4994 0.59 +2.3 5,692,229 + PP_4994 0.67 +3.4 5,692,307 + PP_4994 0.75 +1.7 5,692,355 + PP_4994 0.80 +2.2 5,692,356 - PP_4994 0.81 +2.6 5,692,369 - PP_4994 0.82 +1.9 5,692,458 + +2.4 5,692,459 - +2.3 5,692,525 + +0.2
Or see this region's nucleotide sequence