Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20960 and DDA3937_RS20965 are separated by 390 nucleotides DDA3937_RS20965 and DDA3937_RS20970 are separated by 120 nucleotides DDA3937_RS20970 and DDA3937_RS20975 are separated by 159 nucleotides
DDA3937_RS20960: DDA3937_RS20960 - superoxide dismutase [Mn], at 4,766,357 to 4,766,983
_RS20960
DDA3937_RS20965: DDA3937_RS20965 - methyl-accepting chemotaxis protein, at 4,767,374 to 4,769,260
_RS20965
DDA3937_RS20970: DDA3937_RS20970 - mannitol operon repressor, at 4,769,381 to 4,769,911
_RS20970
DDA3937_RS20975: DDA3937_RS20975 - mannitol-1-phosphate 5-dehydrogenase, at 4,770,071 to 4,771,219
_RS20975
Position (kb) 4767
4768
4769
4770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4766.459 kb on + strand, within DDA3937_RS20960 at 4766.460 kb on - strand, within DDA3937_RS20960 at 4766.865 kb on + strand, within DDA3937_RS20960 at 4766.918 kb on - strand, within DDA3937_RS20960 at 4766.981 kb on + strand at 4766.985 kb on + strand at 4766.985 kb on + strand at 4766.985 kb on + strand at 4766.986 kb on - strand at 4766.986 kb on - strand at 4767.018 kb on - strand at 4767.064 kb on + strand at 4767.072 kb on + strand at 4767.072 kb on + strand at 4767.072 kb on + strand at 4767.072 kb on + strand at 4767.073 kb on - strand at 4767.073 kb on - strand at 4767.073 kb on - strand at 4767.076 kb on + strand at 4767.076 kb on + strand at 4767.076 kb on + strand at 4767.077 kb on - strand at 4767.077 kb on - strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.120 kb on + strand at 4767.121 kb on - strand at 4767.121 kb on - strand at 4767.131 kb on + strand at 4767.163 kb on - strand at 4767.173 kb on - strand at 4767.175 kb on - strand at 4767.224 kb on - strand at 4767.224 kb on - strand at 4767.225 kb on + strand at 4767.234 kb on - strand at 4767.236 kb on + strand at 4767.237 kb on - strand at 4767.250 kb on - strand at 4767.272 kb on - strand at 4767.272 kb on - strand at 4767.272 kb on - strand at 4767.272 kb on - strand at 4767.323 kb on + strand at 4767.324 kb on - strand at 4767.324 kb on - strand at 4767.326 kb on + strand at 4767.326 kb on + strand at 4767.327 kb on - strand at 4767.335 kb on + strand at 4767.335 kb on + strand at 4767.336 kb on - strand at 4767.352 kb on + strand at 4767.357 kb on - strand at 4767.381 kb on + strand at 4767.421 kb on - strand at 4767.476 kb on + strand at 4767.569 kb on + strand, within DDA3937_RS20965 at 4767.569 kb on + strand, within DDA3937_RS20965 at 4767.569 kb on + strand, within DDA3937_RS20965 at 4767.570 kb on - strand, within DDA3937_RS20965 at 4767.570 kb on - strand, within DDA3937_RS20965 at 4767.571 kb on + strand, within DDA3937_RS20965 at 4767.572 kb on - strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.576 kb on + strand, within DDA3937_RS20965 at 4767.577 kb on - strand, within DDA3937_RS20965 at 4767.581 kb on + strand, within DDA3937_RS20965 at 4767.581 kb on + strand, within DDA3937_RS20965 at 4767.582 kb on - strand, within DDA3937_RS20965 at 4767.632 kb on - strand, within DDA3937_RS20965 at 4767.655 kb on + strand, within DDA3937_RS20965 at 4767.675 kb on - strand, within DDA3937_RS20965 at 4767.675 kb on - strand, within DDA3937_RS20965 at 4767.718 kb on + strand, within DDA3937_RS20965 at 4767.718 kb on + strand, within DDA3937_RS20965 at 4767.719 kb on - strand, within DDA3937_RS20965 at 4767.719 kb on - strand, within DDA3937_RS20965 at 4767.737 kb on + strand, within DDA3937_RS20965 at 4767.738 kb on - strand, within DDA3937_RS20965 at 4767.740 kb on - strand, within DDA3937_RS20965 at 4767.846 kb on + strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.847 kb on - strand, within DDA3937_RS20965 at 4767.858 kb on + strand, within DDA3937_RS20965 at 4767.858 kb on + strand, within DDA3937_RS20965 at 4767.858 kb on + strand, within DDA3937_RS20965 at 4767.859 kb on - strand, within DDA3937_RS20965 at 4767.859 kb on - strand, within DDA3937_RS20965 at 4767.988 kb on + strand, within DDA3937_RS20965 at 4768.032 kb on + strand, within DDA3937_RS20965 at 4768.039 kb on + strand, within DDA3937_RS20965 at 4768.052 kb on + strand, within DDA3937_RS20965 at 4768.053 kb on - strand, within DDA3937_RS20965 at 4768.065 kb on + strand, within DDA3937_RS20965 at 4768.066 kb on - strand, within DDA3937_RS20965 at 4768.066 kb on - strand, within DDA3937_RS20965 at 4768.074 kb on - strand, within DDA3937_RS20965 at 4768.085 kb on + strand, within DDA3937_RS20965 at 4768.137 kb on + strand, within DDA3937_RS20965 at 4768.144 kb on + strand, within DDA3937_RS20965 at 4768.145 kb on - strand, within DDA3937_RS20965 at 4768.145 kb on - strand, within DDA3937_RS20965 at 4768.193 kb on - strand, within DDA3937_RS20965 at 4768.235 kb on - strand, within DDA3937_RS20965 at 4768.242 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.265 kb on + strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.266 kb on - strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.267 kb on + strand, within DDA3937_RS20965 at 4768.268 kb on - strand, within DDA3937_RS20965 at 4768.268 kb on - strand, within DDA3937_RS20965 at 4768.268 kb on - strand, within DDA3937_RS20965 at 4768.300 kb on + strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.301 kb on - strand, within DDA3937_RS20965 at 4768.322 kb on - strand, within DDA3937_RS20965 at 4768.342 kb on + strand, within DDA3937_RS20965 at 4768.342 kb on + strand, within DDA3937_RS20965 at 4768.342 kb on + strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.343 kb on - strand, within DDA3937_RS20965 at 4768.385 kb on + strand, within DDA3937_RS20965 at 4768.386 kb on - strand, within DDA3937_RS20965 at 4768.386 kb on - strand, within DDA3937_RS20965 at 4768.386 kb on - strand, within DDA3937_RS20965 at 4768.991 kb on - strand, within DDA3937_RS20965 at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.249 kb on + strand at 4769.250 kb on - strand at 4769.250 kb on - strand at 4769.252 kb on - strand at 4769.252 kb on - strand at 4769.364 kb on + strand at 4769.364 kb on + strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.365 kb on - strand at 4769.413 kb on + strand at 4769.414 kb on - strand at 4769.647 kb on + strand at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.685 kb on + strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.686 kb on - strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.754 kb on + strand, within DDA3937_RS20970 at 4769.766 kb on + strand, within DDA3937_RS20970 at 4769.767 kb on - strand, within DDA3937_RS20970 at 4769.820 kb on - strand, within DDA3937_RS20970 at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.924 kb on + strand at 4769.925 kb on - strand at 4769.930 kb on - strand at 4770.012 kb on - strand at 4770.072 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.087 kb on + strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand at 4770.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,766,459 + DDA3937_RS20960 0.16 -0.4 4,766,460 - DDA3937_RS20960 0.16 +0.0 4,766,865 + DDA3937_RS20960 0.81 -1.2 4,766,918 - DDA3937_RS20960 0.89 -0.7 4,766,981 + -2.7 4,766,985 + +1.5 4,766,985 + -0.8 4,766,985 + -1.0 4,766,986 - -1.5 4,766,986 - +3.1 4,767,018 - -2.3 4,767,064 + -2.2 4,767,072 + -1.7 4,767,072 + -0.7 4,767,072 + -1.5 4,767,072 + +0.5 4,767,073 - +0.0 4,767,073 - +2.2 4,767,073 - -1.5 4,767,076 + -1.6 4,767,076 + -2.2 4,767,076 + -1.2 4,767,077 - +0.9 4,767,077 - +1.2 4,767,120 + +5.2 4,767,120 + -0.2 4,767,120 + +0.9 4,767,120 + -0.1 4,767,120 + -0.4 4,767,121 - +1.4 4,767,121 - -1.8 4,767,131 + -0.8 4,767,163 - +2.0 4,767,173 - -0.4 4,767,175 - +3.0 4,767,224 - -2.5 4,767,224 - -0.7 4,767,225 + +5.7 4,767,234 - +0.6 4,767,236 + +4.8 4,767,237 - +2.2 4,767,250 - -2.3 4,767,272 - +0.1 4,767,272 - -0.4 4,767,272 - -1.5 4,767,272 - +0.3 4,767,323 + -0.1 4,767,324 - +0.8 4,767,324 - +2.6 4,767,326 + +1.1 4,767,326 + +1.8 4,767,327 - -0.1 4,767,335 + -1.2 4,767,335 + -1.0 4,767,336 - -0.2 4,767,352 + +0.2 4,767,357 - -0.9 4,767,381 + -0.8 4,767,421 - -0.2 4,767,476 + -0.9 4,767,569 + DDA3937_RS20965 0.10 +1.6 4,767,569 + DDA3937_RS20965 0.10 -0.7 4,767,569 + DDA3937_RS20965 0.10 -1.3 4,767,570 - DDA3937_RS20965 0.10 +1.2 4,767,570 - DDA3937_RS20965 0.10 -1.4 4,767,571 + DDA3937_RS20965 0.10 +1.1 4,767,572 - DDA3937_RS20965 0.10 -0.8 4,767,576 + DDA3937_RS20965 0.11 -0.6 4,767,576 + DDA3937_RS20965 0.11 +0.5 4,767,576 + DDA3937_RS20965 0.11 -1.0 4,767,576 + DDA3937_RS20965 0.11 -1.2 4,767,577 - DDA3937_RS20965 0.11 -0.2 4,767,581 + DDA3937_RS20965 0.11 +1.9 4,767,581 + DDA3937_RS20965 0.11 -0.1 4,767,582 - DDA3937_RS20965 0.11 -0.3 4,767,632 - DDA3937_RS20965 0.14 -0.2 4,767,655 + DDA3937_RS20965 0.15 +0.6 4,767,675 - DDA3937_RS20965 0.16 -1.4 4,767,675 - DDA3937_RS20965 0.16 -0.4 4,767,718 + DDA3937_RS20965 0.18 -1.2 4,767,718 + DDA3937_RS20965 0.18 -0.5 4,767,719 - DDA3937_RS20965 0.18 +0.5 4,767,719 - DDA3937_RS20965 0.18 -1.8 4,767,737 + DDA3937_RS20965 0.19 -2.1 4,767,738 - DDA3937_RS20965 0.19 +0.3 4,767,740 - DDA3937_RS20965 0.19 -1.2 4,767,846 + DDA3937_RS20965 0.25 -1.0 4,767,847 - DDA3937_RS20965 0.25 +1.3 4,767,847 - DDA3937_RS20965 0.25 -0.8 4,767,847 - DDA3937_RS20965 0.25 +1.1 4,767,847 - DDA3937_RS20965 0.25 -1.0 4,767,858 + DDA3937_RS20965 0.26 +0.2 4,767,858 + DDA3937_RS20965 0.26 -2.5 4,767,858 + DDA3937_RS20965 0.26 -0.1 4,767,859 - DDA3937_RS20965 0.26 +1.2 4,767,859 - DDA3937_RS20965 0.26 -3.1 4,767,988 + DDA3937_RS20965 0.33 -0.6 4,768,032 + DDA3937_RS20965 0.35 -0.3 4,768,039 + DDA3937_RS20965 0.35 -0.7 4,768,052 + DDA3937_RS20965 0.36 -2.5 4,768,053 - DDA3937_RS20965 0.36 +0.4 4,768,065 + DDA3937_RS20965 0.37 -0.1 4,768,066 - DDA3937_RS20965 0.37 +0.7 4,768,066 - DDA3937_RS20965 0.37 -0.0 4,768,074 - DDA3937_RS20965 0.37 +2.4 4,768,085 + DDA3937_RS20965 0.38 +1.8 4,768,137 + DDA3937_RS20965 0.40 +0.5 4,768,144 + DDA3937_RS20965 0.41 -2.0 4,768,145 - DDA3937_RS20965 0.41 +1.7 4,768,145 - DDA3937_RS20965 0.41 +0.0 4,768,193 - DDA3937_RS20965 0.43 +1.9 4,768,235 - DDA3937_RS20965 0.46 -0.6 4,768,242 + DDA3937_RS20965 0.46 +1.8 4,768,265 + DDA3937_RS20965 0.47 +1.6 4,768,265 + DDA3937_RS20965 0.47 -0.6 4,768,265 + DDA3937_RS20965 0.47 -0.4 4,768,265 + DDA3937_RS20965 0.47 -0.5 4,768,265 + DDA3937_RS20965 0.47 -0.0 4,768,265 + DDA3937_RS20965 0.47 +1.7 4,768,265 + DDA3937_RS20965 0.47 -0.0 4,768,265 + DDA3937_RS20965 0.47 +0.6 4,768,265 + DDA3937_RS20965 0.47 +1.4 4,768,265 + DDA3937_RS20965 0.47 +0.4 4,768,265 + DDA3937_RS20965 0.47 +0.7 4,768,265 + DDA3937_RS20965 0.47 +0.2 4,768,266 - DDA3937_RS20965 0.47 +0.2 4,768,266 - DDA3937_RS20965 0.47 -0.5 4,768,266 - DDA3937_RS20965 0.47 -3.0 4,768,266 - DDA3937_RS20965 0.47 -0.7 4,768,266 - DDA3937_RS20965 0.47 -0.8 4,768,266 - DDA3937_RS20965 0.47 -1.2 4,768,267 + DDA3937_RS20965 0.47 -1.8 4,768,267 + DDA3937_RS20965 0.47 +0.6 4,768,267 + DDA3937_RS20965 0.47 -0.0 4,768,267 + DDA3937_RS20965 0.47 +2.3 4,768,268 - DDA3937_RS20965 0.47 +0.4 4,768,268 - DDA3937_RS20965 0.47 +0.6 4,768,268 - DDA3937_RS20965 0.47 +0.6 4,768,300 + DDA3937_RS20965 0.49 -0.2 4,768,301 - DDA3937_RS20965 0.49 -0.5 4,768,301 - DDA3937_RS20965 0.49 +0.8 4,768,301 - DDA3937_RS20965 0.49 -1.4 4,768,301 - DDA3937_RS20965 0.49 +0.2 4,768,322 - DDA3937_RS20965 0.50 -2.8 4,768,342 + DDA3937_RS20965 0.51 +0.0 4,768,342 + DDA3937_RS20965 0.51 -1.0 4,768,342 + DDA3937_RS20965 0.51 +0.1 4,768,343 - DDA3937_RS20965 0.51 +1.6 4,768,343 - DDA3937_RS20965 0.51 -0.3 4,768,343 - DDA3937_RS20965 0.51 +0.5 4,768,343 - DDA3937_RS20965 0.51 +0.9 4,768,343 - DDA3937_RS20965 0.51 -1.2 4,768,385 + DDA3937_RS20965 0.54 -0.5 4,768,386 - DDA3937_RS20965 0.54 -1.8 4,768,386 - DDA3937_RS20965 0.54 +2.4 4,768,386 - DDA3937_RS20965 0.54 -2.1 4,768,991 - DDA3937_RS20965 0.86 -2.4 4,769,249 + -1.0 4,769,249 + -0.4 4,769,249 + -0.1 4,769,249 + +1.5 4,769,249 + +2.7 4,769,249 + +0.3 4,769,250 - -0.2 4,769,250 - -0.5 4,769,252 - -0.5 4,769,252 - -1.0 4,769,364 + -2.5 4,769,364 + +2.2 4,769,365 - -0.6 4,769,365 - +0.6 4,769,365 - +0.9 4,769,413 + -1.0 4,769,414 - +0.6 4,769,647 + -0.4 4,769,685 + DDA3937_RS20970 0.57 -0.4 4,769,685 + DDA3937_RS20970 0.57 +0.3 4,769,686 - DDA3937_RS20970 0.57 +2.3 4,769,686 - DDA3937_RS20970 0.57 -0.7 4,769,686 - DDA3937_RS20970 0.57 -0.9 4,769,754 + DDA3937_RS20970 0.70 +1.9 4,769,754 + DDA3937_RS20970 0.70 +0.0 4,769,766 + DDA3937_RS20970 0.73 -0.2 4,769,767 - DDA3937_RS20970 0.73 -0.0 4,769,820 - DDA3937_RS20970 0.83 +1.0 4,769,924 + -1.4 4,769,924 + -0.0 4,769,924 + -0.4 4,769,924 + +0.1 4,769,925 - -1.2 4,769,930 - -0.8 4,770,012 - -1.0 4,770,072 + -2.1 4,770,087 + +0.0 4,770,087 + +0.6 4,770,087 + -2.5 4,770,087 + +1.3 4,770,088 - -3.1 4,770,088 - +0.8 4,770,088 - -1.4 4,770,088 - -0.2 4,770,088 - +0.6 4,770,088 - +0.4
Or see this region's nucleotide sequence