Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18675 and DDA3937_RS18680 are separated by 10 nucleotides DDA3937_RS18680 and DDA3937_RS18685 overlap by 4 nucleotides DDA3937_RS18685 and DDA3937_RS18690 are separated by 51 nucleotides
DDA3937_RS18675: DDA3937_RS18675 - ABC transporter ATP-binding protein, at 4,268,901 to 4,269,632
_RS18675
DDA3937_RS18680: DDA3937_RS18680 - GDP-L-fucose synthase, at 4,269,643 to 4,270,581
_RS18680
DDA3937_RS18685: DDA3937_RS18685 - WbeA, at 4,270,578 to 4,271,777
_RS18685
DDA3937_RS18690: DDA3937_RS18690 - glycosyltransferase, at 4,271,829 to 4,272,956
_RS18690
Position (kb) 4270
4271
4272 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 4269.620 kb on + strand at 4269.620 kb on + strand at 4269.621 kb on - strand at 4269.624 kb on + strand at 4269.628 kb on + strand at 4269.628 kb on + strand at 4269.629 kb on - strand at 4269.793 kb on + strand, within DDA3937_RS18680 at 4269.818 kb on - strand, within DDA3937_RS18680 at 4269.843 kb on - strand, within DDA3937_RS18680 at 4269.930 kb on + strand, within DDA3937_RS18680 at 4269.988 kb on + strand, within DDA3937_RS18680 at 4269.998 kb on + strand, within DDA3937_RS18680 at 4270.085 kb on - strand at 4270.089 kb on + strand, within DDA3937_RS18680 at 4270.089 kb on + strand, within DDA3937_RS18680 at 4270.089 kb on + strand, within DDA3937_RS18680 at 4270.121 kb on - strand at 4270.161 kb on + strand, within DDA3937_RS18680 at 4270.214 kb on - strand at 4270.285 kb on + strand, within DDA3937_RS18680 at 4270.290 kb on + strand, within DDA3937_RS18680 at 4270.362 kb on - strand, within DDA3937_RS18680 at 4270.594 kb on + strand at 4270.594 kb on + strand at 4270.700 kb on - strand, within DDA3937_RS18685 at 4270.705 kb on + strand, within DDA3937_RS18685 at 4270.706 kb on - strand, within DDA3937_RS18685 at 4270.751 kb on + strand, within DDA3937_RS18685 at 4270.752 kb on - strand, within DDA3937_RS18685 at 4270.752 kb on - strand, within DDA3937_RS18685 at 4270.792 kb on + strand, within DDA3937_RS18685 at 4270.792 kb on + strand, within DDA3937_RS18685 at 4270.793 kb on - strand, within DDA3937_RS18685 at 4270.819 kb on - strand, within DDA3937_RS18685 at 4270.855 kb on + strand, within DDA3937_RS18685 at 4270.943 kb on + strand, within DDA3937_RS18685 at 4270.960 kb on + strand, within DDA3937_RS18685 at 4270.960 kb on + strand, within DDA3937_RS18685 at 4270.960 kb on + strand, within DDA3937_RS18685 at 4270.960 kb on + strand, within DDA3937_RS18685 at 4270.961 kb on - strand, within DDA3937_RS18685 at 4270.965 kb on - strand, within DDA3937_RS18685 at 4270.965 kb on - strand, within DDA3937_RS18685 at 4270.987 kb on - strand, within DDA3937_RS18685 at 4271.006 kb on + strand, within DDA3937_RS18685 at 4271.006 kb on + strand, within DDA3937_RS18685 at 4271.006 kb on + strand, within DDA3937_RS18685 at 4271.007 kb on - strand, within DDA3937_RS18685 at 4271.079 kb on - strand, within DDA3937_RS18685 at 4271.115 kb on - strand, within DDA3937_RS18685 at 4271.119 kb on - strand, within DDA3937_RS18685 at 4271.134 kb on + strand, within DDA3937_RS18685 at 4271.135 kb on - strand, within DDA3937_RS18685 at 4271.135 kb on - strand, within DDA3937_RS18685 at 4271.282 kb on + strand, within DDA3937_RS18685 at 4271.310 kb on + strand, within DDA3937_RS18685 at 4271.411 kb on + strand, within DDA3937_RS18685 at 4271.445 kb on + strand, within DDA3937_RS18685 at 4271.445 kb on + strand, within DDA3937_RS18685 at 4271.446 kb on - strand, within DDA3937_RS18685 at 4271.487 kb on + strand, within DDA3937_RS18685 at 4271.502 kb on + strand, within DDA3937_RS18685 at 4271.503 kb on - strand, within DDA3937_RS18685 at 4271.503 kb on - strand, within DDA3937_RS18685 at 4271.503 kb on - strand, within DDA3937_RS18685 at 4271.546 kb on + strand, within DDA3937_RS18685 at 4271.547 kb on - strand, within DDA3937_RS18685 at 4271.600 kb on - strand, within DDA3937_RS18685 at 4271.619 kb on + strand, within DDA3937_RS18685 at 4271.643 kb on - strand, within DDA3937_RS18685 at 4271.653 kb on - strand, within DDA3937_RS18685 at 4271.653 kb on - strand, within DDA3937_RS18685 at 4271.735 kb on - strand at 4271.754 kb on + strand at 4271.875 kb on - strand at 4271.949 kb on + strand, within DDA3937_RS18690 at 4271.952 kb on - strand, within DDA3937_RS18690 at 4271.975 kb on + strand, within DDA3937_RS18690 at 4271.977 kb on + strand, within DDA3937_RS18690 at 4271.996 kb on + strand, within DDA3937_RS18690 at 4271.996 kb on + strand, within DDA3937_RS18690 at 4271.997 kb on - strand, within DDA3937_RS18690 at 4271.997 kb on - strand, within DDA3937_RS18690 at 4272.028 kb on + strand, within DDA3937_RS18690 at 4272.093 kb on - strand at 4272.262 kb on + strand, within DDA3937_RS18690 at 4272.262 kb on + strand, within DDA3937_RS18690 at 4272.262 kb on + strand, within DDA3937_RS18690 at 4272.262 kb on + strand, within DDA3937_RS18690 at 4272.263 kb on - strand, within DDA3937_RS18690 at 4272.444 kb on + strand, within DDA3937_RS18690 at 4272.445 kb on - strand, within DDA3937_RS18690 at 4272.466 kb on + strand, within DDA3937_RS18690 at 4272.467 kb on - strand, within DDA3937_RS18690 at 4272.535 kb on + strand, within DDA3937_RS18690 at 4272.596 kb on + strand, within DDA3937_RS18690 at 4272.614 kb on - strand, within DDA3937_RS18690 at 4272.614 kb on - strand, within DDA3937_RS18690 at 4272.697 kb on - strand, within DDA3937_RS18690 at 4272.701 kb on + strand, within DDA3937_RS18690 at 4272.743 kb on + strand, within DDA3937_RS18690
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 4,269,620 + -1.7 4,269,620 + +2.4 4,269,621 - -1.6 4,269,624 + -0.9 4,269,628 + -0.7 4,269,628 + -2.6 4,269,629 - -3.0 4,269,793 + DDA3937_RS18680 0.16 -1.6 4,269,818 - DDA3937_RS18680 0.19 -2.9 4,269,843 - DDA3937_RS18680 0.21 +1.0 4,269,930 + DDA3937_RS18680 0.31 -2.6 4,269,988 + DDA3937_RS18680 0.37 -2.0 4,269,998 + DDA3937_RS18680 0.38 -0.6 4,270,085 - -1.7 4,270,089 + DDA3937_RS18680 0.47 -2.0 4,270,089 + DDA3937_RS18680 0.47 -4.0 4,270,089 + DDA3937_RS18680 0.47 -2.4 4,270,121 - -1.7 4,270,161 + DDA3937_RS18680 0.55 -3.8 4,270,214 - -1.1 4,270,285 + DDA3937_RS18680 0.68 -3.0 4,270,290 + DDA3937_RS18680 0.69 -0.6 4,270,362 - DDA3937_RS18680 0.77 -0.6 4,270,594 + -2.6 4,270,594 + -4.6 4,270,700 - DDA3937_RS18685 0.10 -2.6 4,270,705 + DDA3937_RS18685 0.11 -0.6 4,270,706 - DDA3937_RS18685 0.11 -3.0 4,270,751 + DDA3937_RS18685 0.14 -5.0 4,270,752 - DDA3937_RS18685 0.14 -0.3 4,270,752 - DDA3937_RS18685 0.14 -4.1 4,270,792 + DDA3937_RS18685 0.18 -2.8 4,270,792 + DDA3937_RS18685 0.18 +0.4 4,270,793 - DDA3937_RS18685 0.18 -3.4 4,270,819 - DDA3937_RS18685 0.20 -3.0 4,270,855 + DDA3937_RS18685 0.23 -4.3 4,270,943 + DDA3937_RS18685 0.30 -3.0 4,270,960 + DDA3937_RS18685 0.32 -3.6 4,270,960 + DDA3937_RS18685 0.32 -3.2 4,270,960 + DDA3937_RS18685 0.32 -1.7 4,270,960 + DDA3937_RS18685 0.32 -2.8 4,270,961 - DDA3937_RS18685 0.32 -0.8 4,270,965 - DDA3937_RS18685 0.32 -3.8 4,270,965 - DDA3937_RS18685 0.32 -3.3 4,270,987 - DDA3937_RS18685 0.34 -2.9 4,271,006 + DDA3937_RS18685 0.36 -1.9 4,271,006 + DDA3937_RS18685 0.36 -2.6 4,271,006 + DDA3937_RS18685 0.36 -2.8 4,271,007 - DDA3937_RS18685 0.36 -1.1 4,271,079 - DDA3937_RS18685 0.42 -2.0 4,271,115 - DDA3937_RS18685 0.45 -3.6 4,271,119 - DDA3937_RS18685 0.45 -3.7 4,271,134 + DDA3937_RS18685 0.46 -2.5 4,271,135 - DDA3937_RS18685 0.46 -1.1 4,271,135 - DDA3937_RS18685 0.46 -4.8 4,271,282 + DDA3937_RS18685 0.59 -6.8 4,271,310 + DDA3937_RS18685 0.61 -2.1 4,271,411 + DDA3937_RS18685 0.69 -2.0 4,271,445 + DDA3937_RS18685 0.72 -3.4 4,271,445 + DDA3937_RS18685 0.72 -1.9 4,271,446 - DDA3937_RS18685 0.72 -2.1 4,271,487 + DDA3937_RS18685 0.76 -2.9 4,271,502 + DDA3937_RS18685 0.77 -3.0 4,271,503 - DDA3937_RS18685 0.77 -4.2 4,271,503 - DDA3937_RS18685 0.77 -1.3 4,271,503 - DDA3937_RS18685 0.77 -2.8 4,271,546 + DDA3937_RS18685 0.81 -2.5 4,271,547 - DDA3937_RS18685 0.81 -4.5 4,271,600 - DDA3937_RS18685 0.85 -0.9 4,271,619 + DDA3937_RS18685 0.87 -2.4 4,271,643 - DDA3937_RS18685 0.89 -2.8 4,271,653 - DDA3937_RS18685 0.90 -3.4 4,271,653 - DDA3937_RS18685 0.90 -1.2 4,271,735 - -4.8 4,271,754 + -4.6 4,271,875 - -1.9 4,271,949 + DDA3937_RS18690 0.11 -1.9 4,271,952 - DDA3937_RS18690 0.11 -1.7 4,271,975 + DDA3937_RS18690 0.13 -1.7 4,271,977 + DDA3937_RS18690 0.13 -1.7 4,271,996 + DDA3937_RS18690 0.15 -1.9 4,271,996 + DDA3937_RS18690 0.15 -1.6 4,271,997 - DDA3937_RS18690 0.15 -1.6 4,271,997 - DDA3937_RS18690 0.15 -4.1 4,272,028 + DDA3937_RS18690 0.18 -5.9 4,272,093 - -1.4 4,272,262 + DDA3937_RS18690 0.38 -2.0 4,272,262 + DDA3937_RS18690 0.38 -0.6 4,272,262 + DDA3937_RS18690 0.38 +0.4 4,272,262 + DDA3937_RS18690 0.38 -1.6 4,272,263 - DDA3937_RS18690 0.38 -1.1 4,272,444 + DDA3937_RS18690 0.55 -1.4 4,272,445 - DDA3937_RS18690 0.55 -2.1 4,272,466 + DDA3937_RS18690 0.56 +0.9 4,272,467 - DDA3937_RS18690 0.57 +4.6 4,272,535 + DDA3937_RS18690 0.63 -2.6 4,272,596 + DDA3937_RS18690 0.68 +0.8 4,272,614 - DDA3937_RS18690 0.70 -2.3 4,272,614 - DDA3937_RS18690 0.70 -3.2 4,272,697 - DDA3937_RS18690 0.77 -1.1 4,272,701 + DDA3937_RS18690 0.77 -1.7 4,272,743 + DDA3937_RS18690 0.81 -3.0
Or see this region's nucleotide sequence