Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07630

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07620 and DDA3937_RS07625 are separated by 24 nucleotidesDDA3937_RS07625 and DDA3937_RS07630 overlap by 4 nucleotidesDDA3937_RS07630 and DDA3937_RS07635 overlap by 1 nucleotidesDDA3937_RS07635 and DDA3937_RS07640 are separated by 4 nucleotides DDA3937_RS07620: DDA3937_RS07620 - phosphonate C-P lyase system protein PhnK, at 1,718,498 to 1,719,310 _RS07620 DDA3937_RS07625: DDA3937_RS07625 - phosphonate C-P lyase system protein PhnL, at 1,719,335 to 1,720,057 _RS07625 DDA3937_RS07630: DDA3937_RS07630 - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 1,720,054 to 1,721,223 _RS07630 DDA3937_RS07635: DDA3937_RS07635 - ribose 1,5-bisphosphokinase, at 1,721,223 to 1,721,783 _RS07635 DDA3937_RS07640: DDA3937_RS07640 - phosphonate metabolism protein PhnP, at 1,721,788 to 1,722,537 _RS07640 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.275 kb on + strandat 1719.276 kb on - strandat 1719.276 kb on - strandat 1719.276 kb on - strandat 1719.276 kb on - strandat 1719.324 kb on + strandat 1719.325 kb on - strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.334 kb on + strandat 1719.335 kb on - strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.396 kb on + strandat 1719.397 kb on - strandat 1719.500 kb on - strand, within DDA3937_RS07625at 1719.500 kb on - strand, within DDA3937_RS07625at 1719.524 kb on + strand, within DDA3937_RS07625at 1719.533 kb on + strand, within DDA3937_RS07625at 1719.534 kb on - strand, within DDA3937_RS07625at 1719.534 kb on - strandat 1719.534 kb on - strand, within DDA3937_RS07625at 1719.534 kb on - strand, within DDA3937_RS07625at 1719.571 kb on + strand, within DDA3937_RS07625at 1719.571 kb on + strand, within DDA3937_RS07625at 1719.571 kb on + strand, within DDA3937_RS07625at 1719.572 kb on - strand, within DDA3937_RS07625at 1719.572 kb on - strand, within DDA3937_RS07625at 1719.574 kb on + strand, within DDA3937_RS07625at 1719.575 kb on - strand, within DDA3937_RS07625at 1719.575 kb on - strand, within DDA3937_RS07625at 1719.635 kb on - strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.690 kb on + strand, within DDA3937_RS07625at 1719.974 kb on - strand, within DDA3937_RS07625at 1720.035 kb on + strandat 1720.065 kb on + strandat 1720.081 kb on - strandat 1720.081 kb on - strandat 1720.098 kb on + strandat 1720.128 kb on - strandat 1720.128 kb on - strandat 1720.128 kb on - strandat 1720.128 kb on - strandat 1720.252 kb on - strand, within DDA3937_RS07630at 1720.321 kb on - strand, within DDA3937_RS07630at 1720.321 kb on - strand, within DDA3937_RS07630at 1720.351 kb on - strand, within DDA3937_RS07630at 1720.484 kb on + strand, within DDA3937_RS07630at 1720.485 kb on - strand, within DDA3937_RS07630at 1720.485 kb on - strand, within DDA3937_RS07630at 1720.627 kb on + strand, within DDA3937_RS07630at 1720.628 kb on - strand, within DDA3937_RS07630at 1720.628 kb on - strand, within DDA3937_RS07630at 1720.886 kb on + strand, within DDA3937_RS07630at 1720.886 kb on + strand, within DDA3937_RS07630at 1720.886 kb on + strand, within DDA3937_RS07630at 1720.887 kb on - strand, within DDA3937_RS07630at 1720.887 kb on - strand, within DDA3937_RS07630at 1720.990 kb on + strand, within DDA3937_RS07630at 1720.991 kb on - strand, within DDA3937_RS07630at 1720.991 kb on - strand, within DDA3937_RS07630at 1720.991 kb on - strand, within DDA3937_RS07630at 1720.991 kb on - strand, within DDA3937_RS07630at 1721.044 kb on - strand, within DDA3937_RS07630at 1721.044 kb on - strand, within DDA3937_RS07630at 1721.328 kb on + strand, within DDA3937_RS07635at 1721.328 kb on + strand, within DDA3937_RS07635at 1721.328 kb on + strand, within DDA3937_RS07635at 1721.328 kb on + strand, within DDA3937_RS07635at 1721.329 kb on - strand, within DDA3937_RS07635at 1721.330 kb on + strandat 1721.330 kb on + strand, within DDA3937_RS07635at 1721.330 kb on + strand, within DDA3937_RS07635at 1721.330 kb on + strand, within DDA3937_RS07635at 1721.330 kb on + strand, within DDA3937_RS07635at 1721.331 kb on - strand, within DDA3937_RS07635at 1721.331 kb on - strand, within DDA3937_RS07635at 1721.331 kb on - strand, within DDA3937_RS07635at 1721.500 kb on + strand, within DDA3937_RS07635at 1721.533 kb on + strand, within DDA3937_RS07635at 1721.534 kb on - strand, within DDA3937_RS07635at 1721.534 kb on - strand, within DDA3937_RS07635at 1721.699 kb on + strand, within DDA3937_RS07635at 1721.699 kb on + strand, within DDA3937_RS07635at 1721.700 kb on - strand, within DDA3937_RS07635at 1721.787 kb on + strandat 1721.787 kb on + strandat 1721.788 kb on - strandat 1721.788 kb on - strandat 1721.788 kb on - strandat 1721.803 kb on - strandat 1722.010 kb on + strand, within DDA3937_RS07640at 1722.011 kb on - strand, within DDA3937_RS07640at 1722.011 kb on - strandat 1722.011 kb on - strand, within DDA3937_RS07640at 1722.067 kb on - strand, within DDA3937_RS07640at 1722.067 kb on - strand, within DDA3937_RS07640at 1722.112 kb on + strand, within DDA3937_RS07640at 1722.112 kb on + strand, within DDA3937_RS07640at 1722.113 kb on - strand, within DDA3937_RS07640at 1722.113 kb on - strand, within DDA3937_RS07640at 1722.113 kb on - strandat 1722.113 kb on - strand, within DDA3937_RS07640

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,719,275 + -0.7
1,719,275 + -0.4
1,719,275 + -2.4
1,719,275 + +2.3
1,719,275 + +0.5
1,719,276 - -0.3
1,719,276 - +1.1
1,719,276 - -0.0
1,719,276 - -2.6
1,719,324 + -0.7
1,719,325 - +1.2
1,719,334 + +0.6
1,719,334 + -1.3
1,719,334 + -0.9
1,719,334 + +0.3
1,719,334 + -2.9
1,719,335 - -1.2
1,719,396 + -1.7
1,719,396 + -0.9
1,719,396 + -0.3
1,719,396 + +0.8
1,719,396 + -0.3
1,719,397 - +0.2
1,719,500 - DDA3937_RS07625 0.23 -1.7
1,719,500 - DDA3937_RS07625 0.23 -0.8
1,719,524 + DDA3937_RS07625 0.26 -0.1
1,719,533 + DDA3937_RS07625 0.27 -0.5
1,719,534 - DDA3937_RS07625 0.28 +0.3
1,719,534 - -0.5
1,719,534 - DDA3937_RS07625 0.28 -1.0
1,719,534 - DDA3937_RS07625 0.28 -1.0
1,719,571 + DDA3937_RS07625 0.33 +1.1
1,719,571 + DDA3937_RS07625 0.33 -3.2
1,719,571 + DDA3937_RS07625 0.33 -0.7
1,719,572 - DDA3937_RS07625 0.33 -0.1
1,719,572 - DDA3937_RS07625 0.33 +0.3
1,719,574 + DDA3937_RS07625 0.33 +0.3
1,719,575 - DDA3937_RS07625 0.33 -0.9
1,719,575 - DDA3937_RS07625 0.33 +2.7
1,719,635 - DDA3937_RS07625 0.41 +0.1
1,719,690 + DDA3937_RS07625 0.49 -2.2
1,719,690 + DDA3937_RS07625 0.49 +0.8
1,719,690 + DDA3937_RS07625 0.49 +0.2
1,719,690 + DDA3937_RS07625 0.49 -0.7
1,719,974 - DDA3937_RS07625 0.88 +1.1
1,720,035 + -0.4
1,720,065 + -0.9
1,720,081 - -1.5
1,720,081 - -5.0
1,720,098 + -2.4
1,720,128 - -1.2
1,720,128 - +0.3
1,720,128 - +3.4
1,720,128 - +0.4
1,720,252 - DDA3937_RS07630 0.17 -0.9
1,720,321 - DDA3937_RS07630 0.23 +0.3
1,720,321 - DDA3937_RS07630 0.23 -0.6
1,720,351 - DDA3937_RS07630 0.25 +0.5
1,720,484 + DDA3937_RS07630 0.37 -0.1
1,720,485 - DDA3937_RS07630 0.37 -0.7
1,720,485 - DDA3937_RS07630 0.37 +0.3
1,720,627 + DDA3937_RS07630 0.49 -1.4
1,720,628 - DDA3937_RS07630 0.49 +0.2
1,720,628 - DDA3937_RS07630 0.49 +0.1
1,720,886 + DDA3937_RS07630 0.71 +0.1
1,720,886 + DDA3937_RS07630 0.71 +0.8
1,720,886 + DDA3937_RS07630 0.71 -0.6
1,720,887 - DDA3937_RS07630 0.71 +0.1
1,720,887 - DDA3937_RS07630 0.71 -1.0
1,720,990 + DDA3937_RS07630 0.80 -1.2
1,720,991 - DDA3937_RS07630 0.80 -0.4
1,720,991 - DDA3937_RS07630 0.80 -1.5
1,720,991 - DDA3937_RS07630 0.80 -2.2
1,720,991 - DDA3937_RS07630 0.80 -0.5
1,721,044 - DDA3937_RS07630 0.85 +0.5
1,721,044 - DDA3937_RS07630 0.85 +1.0
1,721,328 + DDA3937_RS07635 0.19 -1.2
1,721,328 + DDA3937_RS07635 0.19 -1.8
1,721,328 + DDA3937_RS07635 0.19 -2.1
1,721,328 + DDA3937_RS07635 0.19 +2.1
1,721,329 - DDA3937_RS07635 0.19 +1.9
1,721,330 + -1.2
1,721,330 + DDA3937_RS07635 0.19 +4.7
1,721,330 + DDA3937_RS07635 0.19 -1.5
1,721,330 + DDA3937_RS07635 0.19 -1.7
1,721,330 + DDA3937_RS07635 0.19 +1.4
1,721,331 - DDA3937_RS07635 0.19 -0.1
1,721,331 - DDA3937_RS07635 0.19 -0.5
1,721,331 - DDA3937_RS07635 0.19 +2.3
1,721,500 + DDA3937_RS07635 0.49 +2.3
1,721,533 + DDA3937_RS07635 0.55 +3.6
1,721,534 - DDA3937_RS07635 0.55 -1.9
1,721,534 - DDA3937_RS07635 0.55 -1.2
1,721,699 + DDA3937_RS07635 0.85 -1.4
1,721,699 + DDA3937_RS07635 0.85 +1.9
1,721,700 - DDA3937_RS07635 0.85 -0.0
1,721,787 + +0.3
1,721,787 + -2.2
1,721,788 - +0.2
1,721,788 - -0.7
1,721,788 - +0.4
1,721,803 - -1.0
1,722,010 + DDA3937_RS07640 0.30 -2.4
1,722,011 - DDA3937_RS07640 0.30 +3.1
1,722,011 - +1.1
1,722,011 - DDA3937_RS07640 0.30 +0.4
1,722,067 - DDA3937_RS07640 0.37 -0.2
1,722,067 - DDA3937_RS07640 0.37 -1.2
1,722,112 + DDA3937_RS07640 0.43 +3.7
1,722,112 + DDA3937_RS07640 0.43 -0.7
1,722,113 - DDA3937_RS07640 0.43 +0.5
1,722,113 - DDA3937_RS07640 0.43 +0.7
1,722,113 - -1.7
1,722,113 - DDA3937_RS07640 0.43 +1.7

Or see this region's nucleotide sequence