Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17280

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,934,204	+				-0.5
3,934,204	+				+0.8
3,934,204	+				-1.7
3,934,204	+				-1.7
3,934,204	+				+1.6
3,934,204	+				-0.7
3,934,204	+				-1.2
3,934,204	+				+0.3
3,934,204	+				+0.7
3,934,205	-				+0.3
3,934,205	-				-1.2
3,934,205	-				-1.7
3,934,205	-				-1.2
3,934,218	+				+2.2
3,934,271	+				+0.4
3,934,271	+				-1.7
3,934,310	+				+0.9
3,934,311	-				+0.7
3,934,407	+		DDA3937_RS17275	0.15	+0.8
3,934,475	-		DDA3937_RS17275	0.22	-2.5
3,934,488	+		DDA3937_RS17275	0.24	-2.9
3,934,546	+		DDA3937_RS17275	0.30	-2.3
3,934,546	+		DDA3937_RS17275	0.30	-1.5
3,934,547	-		DDA3937_RS17275	0.30	-1.6
3,934,630	+		DDA3937_RS17275	0.39	-1.0
3,934,631	-		DDA3937_RS17275	0.39	-2.4
3,934,871	-		DDA3937_RS17275	0.66	-1.2
3,934,871	-		DDA3937_RS17275	0.66	+1.0
3,934,883	+		DDA3937_RS17275	0.67	-0.0
3,934,902	-		DDA3937_RS17275	0.69	+0.9
3,934,961	-		DDA3937_RS17275	0.76	-1.5
3,934,961	-		DDA3937_RS17275	0.76	+0.3
3,934,976	+		DDA3937_RS17275	0.77	-3.6
3,935,019	-		DDA3937_RS17275	0.82	-0.3
3,935,019	-		DDA3937_RS17275	0.82	-0.6
3,935,042	+				-1.5
3,935,042	+		DDA3937_RS17275	0.84	+0.1
3,935,042	+		DDA3937_RS17275	0.84	-0.6
3,935,043	-		DDA3937_RS17275	0.85	-2.2
3,935,043	-		DDA3937_RS17275	0.85	-2.3
3,935,107	+				-2.2
3,935,111	-				-0.3
3,935,111	-				-0.7
3,935,185	+				-0.8
3,935,194	+				+0.2
3,935,485	+		DDA3937_RS17280	0.24	-0.4
3,935,530	+		DDA3937_RS17280	0.27	+0.4
3,935,655	-		DDA3937_RS17280	0.37	-0.9
3,935,808	+		DDA3937_RS17280	0.50	-2.5
3,935,808	+		DDA3937_RS17280	0.50	-0.4
3,935,808	+		DDA3937_RS17280	0.50	-1.0
3,935,808	+		DDA3937_RS17280	0.50	-3.1
3,935,808	+		DDA3937_RS17280	0.50	+0.3
3,935,808	+		DDA3937_RS17280	0.50	-0.6
3,935,809	-		DDA3937_RS17280	0.50	+0.5
3,935,809	-		DDA3937_RS17280	0.50	+0.5
3,935,809	-		DDA3937_RS17280	0.50	-2.2
3,935,927	+		DDA3937_RS17280	0.59	-3.2
3,935,927	+		DDA3937_RS17280	0.59	+0.8
3,935,927	+		DDA3937_RS17280	0.59	+0.6
3,935,928	-		DDA3937_RS17280	0.59	-2.6
3,935,928	-		DDA3937_RS17280	0.59	-0.0
3,935,928	-		DDA3937_RS17280	0.59	+0.0
3,935,928	-		DDA3937_RS17280	0.59	-0.9
3,936,178	+		DDA3937_RS17280	0.79	-2.3
3,936,178	+		DDA3937_RS17280	0.79	+0.1
3,936,179	-		DDA3937_RS17280	0.79	+1.3
3,936,179	-		DDA3937_RS17280	0.79	-0.2
3,936,179	-		DDA3937_RS17280	0.79	-2.0
3,936,179	-		DDA3937_RS17280	0.79	+0.0
3,936,179	-		DDA3937_RS17280	0.79	+2.4
3,936,179	-		DDA3937_RS17280	0.79	-2.1
3,936,179	-		DDA3937_RS17280	0.79	-0.6
3,936,326	+				-1.7
3,936,327	-				-0.3
3,936,327	-				-1.7
3,936,367	-				+0.7
3,936,422	+				+1.8
3,936,423	-				+2.3
3,936,423	-				+1.2
3,936,434	+				-0.9
3,936,434	+				-0.6
3,936,502	+				-0.1
3,936,502	+				-2.9
3,936,502	+				-0.3
3,936,502	+				-1.2
3,936,503	-				+0.2
3,936,503	-				-2.3
3,936,520	-				+0.8
3,936,520	-				-1.2
3,936,521	+				+0.6
3,936,521	+				-1.0
3,936,521	+				-2.2
3,936,521	+				-2.9
3,936,521	+				+1.3
3,936,521	+				+0.8
3,936,521	+				-0.2
3,936,521	+				+1.2
3,936,521	+				-0.4
3,936,521	+				-2.6
3,936,522	-				+1.6
3,936,522	-				-0.3
3,936,522	-				-0.3
3,936,522	-				+0.4
3,936,522	-				+1.6
3,936,522	-				-0.2
3,936,522	-				-3.1
3,936,522	-				+0.8
3,936,522	-				+1.8
3,936,534	-				-2.2
3,936,534	-				+1.7
3,936,538	+				+1.7
3,936,538	+				+0.9
3,936,538	+				-1.5
3,936,538	+				+0.0
3,936,539	-				-1.0
3,936,539	-				+0.4
3,936,539	-				+0.6
3,936,539	-				-1.0
3,936,539	-				-1.7
3,936,539	-				-0.3
3,936,539	-				+0.8
3,936,539	-				-0.2
3,936,550	+				+0.6
3,936,588	-				+0.3
3,936,600	+				+0.5
3,936,600	+				-1.9
3,936,600	+				-0.1
3,936,601	-				+1.4
3,936,601	-				+0.9
3,936,602	+				-0.4
3,936,602	+				+0.4
3,936,602	+				-1.5
3,936,603	-				-1.7
3,936,603	-				-1.5
3,936,603	-				-1.3
3,936,627	+				+1.3
3,936,627	+				+0.8
3,936,819	+		DDA3937_RS17285	0.37	-3.0
3,936,908	+		DDA3937_RS17285	0.51	+0.9
3,936,909	-		DDA3937_RS17285	0.51	-0.7
3,936,920	+		DDA3937_RS17285	0.53	-3.1
3,936,920	+		DDA3937_RS17285	0.53	+0.6
3,936,920	+		DDA3937_RS17285	0.53	+0.0
3,936,921	-		DDA3937_RS17285	0.53	+2.1
3,936,997	+		DDA3937_RS17285	0.65	-0.2
3,936,998	-		DDA3937_RS17285	0.66	+0.9
3,937,040	+		DDA3937_RS17285	0.72	+0.4
3,937,040	+		DDA3937_RS17285	0.72	+0.5
3,937,040	+		DDA3937_RS17285	0.72	+1.7
3,937,041	-		DDA3937_RS17285	0.72	-2.2
3,937,041	-		DDA3937_RS17285	0.72	-1.2
3,937,041	-		DDA3937_RS17285	0.72	+0.2
3,937,041	-		DDA3937_RS17285	0.72	-3.3
3,937,041	-		DDA3937_RS17285	0.72	+0.7
3,937,041	-		DDA3937_RS17285	0.72	+0.7
3,937,042	+		DDA3937_RS17285	0.73	-0.3
3,937,042	+		DDA3937_RS17285	0.73	-0.1
3,937,043	-		DDA3937_RS17285	0.73	+0.3
3,937,128	+		DDA3937_RS17285	0.86	-1.0
3,937,128	+		DDA3937_RS17285	0.86	-2.1
3,937,128	+				+1.8
3,937,129	-		DDA3937_RS17285	0.87	+0.0
3,937,139	+		DDA3937_RS17285	0.88	+0.6
3,937,164	+				-3.9
3,937,165	-				-2.7
3,937,179	+				-3.4
3,937,179	+				+0.1
3,937,180	-				+0.8
3,937,180	-				-0.9
3,937,180	-				-0.5
3,937,180	-				+0.8
3,937,408	-				+2.0
3,937,410	+				+0.3
3,937,411	-				+0.2
3,937,411	-				-2.5
3,937,412	+				-0.3
3,937,412	+				+1.8
3,937,412	+				+1.7
3,937,412	+				-1.7
3,937,412	+				-0.2
3,937,412	+				-1.7
3,937,413	-				-3.0
3,937,413	-				+0.7
3,937,413	-				+0.5
3,937,413	-				+1.0
3,937,413	-				+1.0
3,937,413	-				+0.2
3,937,413	-				-1.1
3,937,413	-				-0.3
3,937,433	+				+1.4
3,937,433	+				+0.2
3,937,433	+				-2.6
3,937,433	+				+0.4
3,937,434	-				-2.5