Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14705

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
3,376,674	+		DDA3937_RS14700	0.59	-0.2
3,376,674	+		DDA3937_RS14700	0.59	-3.5
3,376,674	+		DDA3937_RS14700	0.59	+1.9
3,376,674	+		DDA3937_RS14700	0.59	-1.0
3,376,674	+		DDA3937_RS14700	0.59	+1.3
3,376,674	+		DDA3937_RS14700	0.59	-1.3
3,376,675	-		DDA3937_RS14700	0.59	+0.4
3,376,675	-		DDA3937_RS14700	0.59	+0.4
3,376,680	-		DDA3937_RS14700	0.59	+0.4
3,376,708	-		DDA3937_RS14700	0.60	-0.9
3,376,708	-		DDA3937_RS14700	0.60	+0.1
3,376,727	+		DDA3937_RS14700	0.61	-1.8
3,376,729	+		DDA3937_RS14700	0.61	+0.0
3,376,729	+		DDA3937_RS14700	0.61	-0.1
3,376,729	+		DDA3937_RS14700	0.61	-2.2
3,376,729	+		DDA3937_RS14700	0.61	-2.9
3,376,730	-		DDA3937_RS14700	0.61	-2.9
3,376,730	-		DDA3937_RS14700	0.61	-3.0
3,376,730	-		DDA3937_RS14700	0.61	+1.3
3,376,730	-		DDA3937_RS14700	0.61	+1.2
3,376,730	-		DDA3937_RS14700	0.61	-0.3
3,376,730	-		DDA3937_RS14700	0.61	+2.2
3,376,813	+		DDA3937_RS14700	0.65	+1.7
3,376,825	-		DDA3937_RS14700	0.66	+1.1
3,376,877	-		DDA3937_RS14700	0.68	-0.7
3,376,903	+		DDA3937_RS14700	0.69	+0.3
3,376,903	+		DDA3937_RS14700	0.69	+0.5
3,376,904	-		DDA3937_RS14700	0.69	-1.4
3,376,904	-		DDA3937_RS14700	0.69	-0.5
3,376,904	-		DDA3937_RS14700	0.69	-0.6
3,376,912	+		DDA3937_RS14700	0.70	-0.5
3,376,912	+		DDA3937_RS14700	0.70	-0.3
3,376,912	+		DDA3937_RS14700	0.70	+2.3
3,376,912	+		DDA3937_RS14700	0.70	+1.0
3,376,912	+		DDA3937_RS14700	0.70	+1.3
3,376,912	+		DDA3937_RS14700	0.70	-0.3
3,376,912	+		DDA3937_RS14700	0.70	-1.9
3,376,912	+		DDA3937_RS14700	0.70	+0.1
3,376,913	-		DDA3937_RS14700	0.70	-0.3
3,376,913	-		DDA3937_RS14700	0.70	-0.4
3,376,913	-		DDA3937_RS14700	0.70	+0.5
3,376,913	-				-1.9
3,376,913	-		DDA3937_RS14700	0.70	-0.2
3,376,913	-		DDA3937_RS14700	0.70	+1.5
3,376,913	-		DDA3937_RS14700	0.70	-2.8
3,376,913	-		DDA3937_RS14700	0.70	+0.9
3,376,913	-		DDA3937_RS14700	0.70	+0.9
3,376,913	-		DDA3937_RS14700	0.70	+0.7
3,376,914	+		DDA3937_RS14700	0.70	-1.9
3,376,914	+		DDA3937_RS14700	0.70	-0.8
3,376,914	+		DDA3937_RS14700	0.70	-1.1
3,376,914	+		DDA3937_RS14700	0.70	-0.7
3,376,915	-		DDA3937_RS14700	0.70	+1.7
3,376,915	-		DDA3937_RS14700	0.70	-0.2
3,376,915	-		DDA3937_RS14700	0.70	-0.7
3,376,915	-		DDA3937_RS14700	0.70	-0.8
3,376,915	-		DDA3937_RS14700	0.70	-0.6
3,376,957	-		DDA3937_RS14700	0.72	-0.6
3,376,969	-		DDA3937_RS14700	0.72	+0.6
3,376,997	+				-1.6
3,376,997	+		DDA3937_RS14700	0.73	-0.5
3,376,997	+		DDA3937_RS14700	0.73	-2.1
3,376,997	+		DDA3937_RS14700	0.73	+0.4
3,376,998	-		DDA3937_RS14700	0.73	+0.5
3,377,025	+		DDA3937_RS14700	0.75	-0.1
3,377,025	+				-1.4
3,377,025	+		DDA3937_RS14700	0.75	+0.3
3,377,026	-		DDA3937_RS14700	0.75	+0.2
3,377,026	-		DDA3937_RS14700	0.75	-0.6
3,377,026	-		DDA3937_RS14700	0.75	+1.4
3,377,026	-		DDA3937_RS14700	0.75	-2.5
3,377,028	+		DDA3937_RS14700	0.75	+1.9
3,377,029	-		DDA3937_RS14700	0.75	-2.5
3,377,056	-		DDA3937_RS14700	0.76	-2.4
3,377,080	+		DDA3937_RS14700	0.77	-1.6
3,377,081	-		DDA3937_RS14700	0.77	-2.1
3,377,081	-		DDA3937_RS14700	0.77	-1.1
3,377,099	-		DDA3937_RS14700	0.78	-3.6
3,377,099	-		DDA3937_RS14700	0.78	-0.1
3,377,099	-		DDA3937_RS14700	0.78	-3.4
3,377,099	-		DDA3937_RS14700	0.78	-1.9
3,377,099	-				-1.6
3,377,099	-		DDA3937_RS14700	0.78	-0.3
3,377,099	-		DDA3937_RS14700	0.78	+0.8
3,377,099	-		DDA3937_RS14700	0.78	-0.3
3,377,099	-		DDA3937_RS14700	0.78	+0.4
3,377,188	+		DDA3937_RS14700	0.82	-1.3
3,377,188	+		DDA3937_RS14700	0.82	+0.7
3,377,188	+		DDA3937_RS14700	0.82	-0.6
3,377,189	-		DDA3937_RS14700	0.82	+0.1
3,377,194	+		DDA3937_RS14700	0.82	-1.3
3,377,194	+		DDA3937_RS14700	0.82	+1.7
3,377,221	+		DDA3937_RS14700	0.84	+0.1
3,377,222	-		DDA3937_RS14700	0.84	-0.5
3,377,222	-		DDA3937_RS14700	0.84	+0.5
3,377,222	-		DDA3937_RS14700	0.84	+0.9
3,377,256	+		DDA3937_RS14700	0.85	-0.7
3,377,256	+		DDA3937_RS14700	0.85	+0.7
3,377,256	+		DDA3937_RS14700	0.85	-0.9
3,377,257	-		DDA3937_RS14700	0.85	+0.0
3,377,257	-		DDA3937_RS14700	0.85	+0.4
3,377,290	+		DDA3937_RS14700	0.87	-2.3
3,377,290	+		DDA3937_RS14700	0.87	-1.6
3,377,291	-		DDA3937_RS14700	0.87	-0.2
3,377,291	-		DDA3937_RS14700	0.87	-0.4
3,377,291	-		DDA3937_RS14700	0.87	+0.7
3,377,291	-		DDA3937_RS14700	0.87	-0.3
3,377,339	+		DDA3937_RS14700	0.89	-3.2
3,377,339	+		DDA3937_RS14700	0.89	-1.5
3,377,339	+		DDA3937_RS14700	0.89	+1.7
3,377,339	+		DDA3937_RS14700	0.89	+1.1
3,377,340	-		DDA3937_RS14700	0.89	-1.3
3,377,344	+		DDA3937_RS14700	0.89	-0.6
3,377,344	+		DDA3937_RS14700	0.89	-2.8
3,377,344	+		DDA3937_RS14700	0.89	+1.1
3,377,345	-		DDA3937_RS14700	0.89	+1.4
3,377,345	-		DDA3937_RS14700	0.89	-0.9
3,377,345	-		DDA3937_RS14700	0.89	+0.2
3,377,345	-		DDA3937_RS14700	0.89	-1.0
3,377,345	-		DDA3937_RS14700	0.89	+2.3
3,377,346	+		DDA3937_RS14700	0.89	-1.3
3,377,346	+		DDA3937_RS14700	0.89	-2.6
3,377,347	-		DDA3937_RS14700	0.89	-1.1
3,377,359	+		DDA3937_RS14700	0.90	+0.3
3,377,359	+				-1.9
3,377,359	+		DDA3937_RS14700	0.90	-1.9
3,377,360	-		DDA3937_RS14700	0.90	-0.7
3,377,396	-				-1.1
3,377,396	-				-0.1
3,377,396	-				+0.4
3,377,396	-				-1.3
3,377,397	+				+0.5
3,377,397	+				-0.7
3,377,397	+				-3.6
3,377,397	+				-1.3
3,377,397	+				-1.0
3,377,398	-				+0.9
3,377,398	-				+1.9
3,377,398	-				-2.8
3,377,500	+				+0.9
3,377,500	+				-1.6
3,377,500	+				-3.0
3,377,500	+				+1.2
3,377,500	+				+0.6
3,377,501	-				-1.6
3,377,501	-				+0.6
3,377,501	-				-3.6
3,377,501	-				-0.3
3,377,501	-				+0.2
3,377,536	+				-2.5
3,377,536	+				+1.5
3,377,581	+				-1.2
3,377,582	-				-0.1
3,377,653	+				-0.2
3,377,653	+				-2.3
3,377,654	-				+3.6
3,377,654	-				+1.3
3,377,654	-				+2.5
3,377,659	+				-0.9
3,377,659	+				+0.0
3,377,659	+				+0.3
3,377,660	-				-1.7
3,377,677	+				-0.1
3,377,772	+				-1.6
3,377,772	+				+1.8
3,377,773	-				+1.2
3,378,025	+		DDA3937_RS14705	0.30	-0.5
3,378,192	+		DDA3937_RS14705	0.44	-0.9
3,378,192	+		DDA3937_RS14705	0.44	-0.2
3,378,193	-		DDA3937_RS14705	0.44	-1.9
3,378,193	-		DDA3937_RS14705	0.44	-0.3
3,378,193	-		DDA3937_RS14705	0.44	-2.3
3,378,193	-		DDA3937_RS14705	0.44	-0.4
3,378,257	+		DDA3937_RS14705	0.50	+0.7
3,378,258	-		DDA3937_RS14705	0.50	-0.6
3,378,258	-		DDA3937_RS14705	0.50	-1.5
3,378,258	-		DDA3937_RS14705	0.50	+0.4
3,378,537	-		DDA3937_RS14705	0.73	-0.3
3,378,688	+		DDA3937_RS14705	0.86	-0.3
3,378,794	+				+0.8
3,379,083	+		DDA3937_RS14710	0.14	-1.3
3,379,083	+		DDA3937_RS14710	0.14	-0.2
3,379,083	+		DDA3937_RS14710	0.14	+1.4
3,379,084	-		DDA3937_RS14710	0.14	-0.2
3,379,084	-		DDA3937_RS14710	0.14	+1.0
3,379,089	+		DDA3937_RS14710	0.15	-0.1
3,379,089	+		DDA3937_RS14710	0.15	+1.0
3,379,089	+		DDA3937_RS14710	0.15	+0.5
3,379,090	-		DDA3937_RS14710	0.15	-0.1
3,379,110	-		DDA3937_RS14710	0.16	+0.7
3,379,110	-		DDA3937_RS14710	0.16	-2.3
3,379,118	+		DDA3937_RS14710	0.16	-0.4
3,379,118	+		DDA3937_RS14710	0.16	-0.2
3,379,119	-		DDA3937_RS14710	0.16	+0.4
3,379,119	-		DDA3937_RS14710	0.16	+0.1
3,379,119	-		DDA3937_RS14710	0.16	-0.5
3,379,258	+		DDA3937_RS14710	0.25	+0.6
3,379,258	+				-2.1
3,379,259	-		DDA3937_RS14710	0.25	+1.7
3,379,297	-		DDA3937_RS14710	0.27	+2.2
3,379,297	-		DDA3937_RS14710	0.27	+1.8
3,379,449	+		DDA3937_RS14710	0.37	+0.2
3,379,449	+		DDA3937_RS14710	0.37	-0.7
3,379,472	+		DDA3937_RS14710	0.38	+1.1
3,379,473	-		DDA3937_RS14710	0.38	+0.1
3,379,473	-		DDA3937_RS14710	0.38	-1.6
3,379,475	+		DDA3937_RS14710	0.38	+2.5
3,379,475	+		DDA3937_RS14710	0.38	-1.6
3,379,475	+		DDA3937_RS14710	0.38	+1.7
3,379,476	-		DDA3937_RS14710	0.38	+0.6
3,379,476	-		DDA3937_RS14710	0.38	-0.3
3,379,478	+		DDA3937_RS14710	0.38	-0.2
3,379,478	+		DDA3937_RS14710	0.38	-1.0
3,379,478	+		DDA3937_RS14710	0.38	-0.4
3,379,478	+		DDA3937_RS14710	0.38	-2.0
3,379,478	+		DDA3937_RS14710	0.38	-0.4
3,379,478	+		DDA3937_RS14710	0.38	-0.7
3,379,479	-		DDA3937_RS14710	0.39	-0.5
3,379,479	-		DDA3937_RS14710	0.39	-0.1
3,379,479	-		DDA3937_RS14710	0.39	-0.9
3,379,479	-		DDA3937_RS14710	0.39	+0.0
3,379,555	+		DDA3937_RS14710	0.43	+0.7
3,379,559	+		DDA3937_RS14710	0.43	+1.4
3,379,560	-		DDA3937_RS14710	0.44	-1.8
3,379,595	+		DDA3937_RS14710	0.46	-2.9
3,379,595	+		DDA3937_RS14710	0.46	+0.6
3,379,595	+		DDA3937_RS14710	0.46	-0.6
3,379,595	+				-1.3
3,379,595	+		DDA3937_RS14710	0.46	+0.5
3,379,596	-		DDA3937_RS14710	0.46	-0.1