Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06875

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06865 and DDA3937_RS06870 are separated by 29 nucleotidesDDA3937_RS06870 and DDA3937_RS06875 overlap by 8 nucleotidesDDA3937_RS06875 and DDA3937_RS06880 are separated by 224 nucleotides DDA3937_RS06865: DDA3937_RS06865 - hemin ABC transporter substrate-binding protein, at 1,537,132 to 1,538,001 _RS06865 DDA3937_RS06870: DDA3937_RS06870 - iron ABC transporter permease, at 1,538,031 to 1,538,987 _RS06870 DDA3937_RS06875: DDA3937_RS06875 - heme ABC transporter ATP-binding protein, at 1,538,980 to 1,539,774 _RS06875 DDA3937_RS06880: DDA3937_RS06880 - TonB-dependent receptor, at 1,539,999 to 1,542,485 _RS06880 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1538.148 kb on + strand, within DDA3937_RS06870at 1538.149 kb on - strand, within DDA3937_RS06870at 1538.149 kb on - strand, within DDA3937_RS06870at 1538.547 kb on - strand, within DDA3937_RS06870at 1538.671 kb on - strand, within DDA3937_RS06870at 1538.671 kb on - strand, within DDA3937_RS06870at 1539.026 kb on - strandat 1539.109 kb on - strand, within DDA3937_RS06875at 1539.120 kb on + strand, within DDA3937_RS06875at 1539.126 kb on + strand, within DDA3937_RS06875at 1539.127 kb on - strand, within DDA3937_RS06875at 1539.252 kb on + strand, within DDA3937_RS06875at 1539.252 kb on + strand, within DDA3937_RS06875at 1539.253 kb on - strand, within DDA3937_RS06875at 1539.255 kb on + strand, within DDA3937_RS06875at 1539.256 kb on - strand, within DDA3937_RS06875at 1539.256 kb on - strand, within DDA3937_RS06875at 1539.256 kb on - strand, within DDA3937_RS06875at 1539.256 kb on - strand, within DDA3937_RS06875at 1539.279 kb on - strand, within DDA3937_RS06875at 1539.388 kb on + strand, within DDA3937_RS06875at 1539.389 kb on - strand, within DDA3937_RS06875at 1539.748 kb on - strandat 1539.838 kb on + strandat 1539.838 kb on + strandat 1539.839 kb on - strandat 1539.841 kb on + strandat 1539.842 kb on - strandat 1539.916 kb on + strandat 1539.919 kb on - strandat 1539.998 kb on + strandat 1539.998 kb on + strandat 1539.999 kb on - strandat 1540.060 kb on + strandat 1540.060 kb on + strandat 1540.060 kb on + strandat 1540.061 kb on - strandat 1540.140 kb on - strandat 1540.140 kb on - strandat 1540.165 kb on + strandat 1540.166 kb on - strandat 1540.169 kb on - strandat 1540.203 kb on - strandat 1540.327 kb on + strand, within DDA3937_RS06880at 1540.327 kb on + strand, within DDA3937_RS06880at 1540.327 kb on + strand, within DDA3937_RS06880at 1540.327 kb on + strand, within DDA3937_RS06880at 1540.327 kb on + strand, within DDA3937_RS06880at 1540.327 kb on + strand, within DDA3937_RS06880at 1540.328 kb on - strand, within DDA3937_RS06880at 1540.328 kb on - strand, within DDA3937_RS06880at 1540.328 kb on - strand, within DDA3937_RS06880at 1540.328 kb on - strand, within DDA3937_RS06880at 1540.328 kb on - strand, within DDA3937_RS06880at 1540.328 kb on - strand, within DDA3937_RS06880at 1540.359 kb on - strand, within DDA3937_RS06880at 1540.359 kb on - strand, within DDA3937_RS06880at 1540.443 kb on + strand, within DDA3937_RS06880at 1540.452 kb on + strand, within DDA3937_RS06880at 1540.453 kb on - strand, within DDA3937_RS06880at 1540.556 kb on + strand, within DDA3937_RS06880at 1540.556 kb on + strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.557 kb on - strand, within DDA3937_RS06880at 1540.578 kb on + strand, within DDA3937_RS06880at 1540.578 kb on + strandat 1540.578 kb on + strand, within DDA3937_RS06880at 1540.579 kb on - strand, within DDA3937_RS06880at 1540.590 kb on + strand, within DDA3937_RS06880at 1540.590 kb on + strand, within DDA3937_RS06880at 1540.590 kb on + strand, within DDA3937_RS06880at 1540.590 kb on + strand, within DDA3937_RS06880at 1540.590 kb on + strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strandat 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.591 kb on - strand, within DDA3937_RS06880at 1540.596 kb on + strand, within DDA3937_RS06880at 1540.596 kb on + strand, within DDA3937_RS06880at 1540.596 kb on + strand, within DDA3937_RS06880at 1540.596 kb on + strand, within DDA3937_RS06880at 1540.597 kb on - strand, within DDA3937_RS06880at 1540.597 kb on - strand, within DDA3937_RS06880at 1540.597 kb on - strand, within DDA3937_RS06880at 1540.680 kb on - strand, within DDA3937_RS06880at 1540.695 kb on + strand, within DDA3937_RS06880at 1540.696 kb on - strand, within DDA3937_RS06880at 1540.696 kb on - strand, within DDA3937_RS06880at 1540.700 kb on - strand, within DDA3937_RS06880at 1540.719 kb on + strand, within DDA3937_RS06880at 1540.719 kb on + strand, within DDA3937_RS06880at 1540.719 kb on + strand, within DDA3937_RS06880at 1540.719 kb on + strand, within DDA3937_RS06880at 1540.720 kb on - strand, within DDA3937_RS06880at 1540.720 kb on - strand, within DDA3937_RS06880at 1540.720 kb on - strand, within DDA3937_RS06880at 1540.740 kb on + strandat 1540.741 kb on - strand, within DDA3937_RS06880

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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1,538,148 + DDA3937_RS06870 0.12 +0.8
1,538,149 - DDA3937_RS06870 0.12 +2.6
1,538,149 - DDA3937_RS06870 0.12 +2.2
1,538,547 - DDA3937_RS06870 0.54 +3.0
1,538,671 - DDA3937_RS06870 0.67 +0.3
1,538,671 - DDA3937_RS06870 0.67 -2.9
1,539,026 - +0.5
1,539,109 - DDA3937_RS06875 0.16 +0.6
1,539,120 + DDA3937_RS06875 0.18 -0.1
1,539,126 + DDA3937_RS06875 0.18 -0.7
1,539,127 - DDA3937_RS06875 0.18 -1.9
1,539,252 + DDA3937_RS06875 0.34 +1.0
1,539,252 + DDA3937_RS06875 0.34 +0.9
1,539,253 - DDA3937_RS06875 0.34 -1.7
1,539,255 + DDA3937_RS06875 0.35 -0.9
1,539,256 - DDA3937_RS06875 0.35 -1.2
1,539,256 - DDA3937_RS06875 0.35 +1.2
1,539,256 - DDA3937_RS06875 0.35 -2.4
1,539,256 - DDA3937_RS06875 0.35 +0.6
1,539,279 - DDA3937_RS06875 0.38 -3.4
1,539,388 + DDA3937_RS06875 0.51 -2.2
1,539,389 - DDA3937_RS06875 0.51 -0.4
1,539,748 - +0.2
1,539,838 + -0.8
1,539,838 + +0.3
1,539,839 - +1.2
1,539,841 + +0.8
1,539,842 - +0.0
1,539,916 + +1.0
1,539,919 - +0.6
1,539,998 + -0.3
1,539,998 + -3.1
1,539,999 - -2.4
1,540,060 + -1.6
1,540,060 + -0.1
1,540,060 + +0.2
1,540,061 - -1.4
1,540,140 - -0.9
1,540,140 - +0.3
1,540,165 + +0.6
1,540,166 - -0.4
1,540,169 - +0.2
1,540,203 - -0.6
1,540,327 + DDA3937_RS06880 0.13 -2.2
1,540,327 + DDA3937_RS06880 0.13 +0.6
1,540,327 + DDA3937_RS06880 0.13 +0.1
1,540,327 + DDA3937_RS06880 0.13 -0.6
1,540,327 + DDA3937_RS06880 0.13 +2.7
1,540,327 + DDA3937_RS06880 0.13 +1.2
1,540,328 - DDA3937_RS06880 0.13 +0.4
1,540,328 - DDA3937_RS06880 0.13 -1.8
1,540,328 - DDA3937_RS06880 0.13 -1.4
1,540,328 - DDA3937_RS06880 0.13 -0.5
1,540,328 - DDA3937_RS06880 0.13 +0.3
1,540,328 - DDA3937_RS06880 0.13 +0.8
1,540,359 - DDA3937_RS06880 0.14 +1.1
1,540,359 - DDA3937_RS06880 0.14 +1.8
1,540,443 + DDA3937_RS06880 0.18 +0.1
1,540,452 + DDA3937_RS06880 0.18 -1.7
1,540,453 - DDA3937_RS06880 0.18 +1.5
1,540,556 + DDA3937_RS06880 0.22 +1.3
1,540,556 + DDA3937_RS06880 0.22 -0.1
1,540,557 - DDA3937_RS06880 0.22 +0.8
1,540,557 - DDA3937_RS06880 0.22 +0.9
1,540,557 - DDA3937_RS06880 0.22 -0.0
1,540,557 - DDA3937_RS06880 0.22 -2.4
1,540,557 - DDA3937_RS06880 0.22 -3.9
1,540,557 - DDA3937_RS06880 0.22 -2.3
1,540,557 - DDA3937_RS06880 0.22 +0.8
1,540,557 - DDA3937_RS06880 0.22 -0.8
1,540,557 - DDA3937_RS06880 0.22 -0.9
1,540,578 + DDA3937_RS06880 0.23 +0.6
1,540,578 + -2.4
1,540,578 + DDA3937_RS06880 0.23 +0.3
1,540,579 - DDA3937_RS06880 0.23 +1.2
1,540,590 + DDA3937_RS06880 0.24 +0.1
1,540,590 + DDA3937_RS06880 0.24 +0.6
1,540,590 + DDA3937_RS06880 0.24 +0.7
1,540,590 + DDA3937_RS06880 0.24 +0.5
1,540,590 + DDA3937_RS06880 0.24 -2.9
1,540,591 - DDA3937_RS06880 0.24 -0.5
1,540,591 - DDA3937_RS06880 0.24 -0.9
1,540,591 - DDA3937_RS06880 0.24 +1.0
1,540,591 - DDA3937_RS06880 0.24 -0.2
1,540,591 - -0.9
1,540,591 - DDA3937_RS06880 0.24 -0.4
1,540,591 - DDA3937_RS06880 0.24 +0.8
1,540,591 - DDA3937_RS06880 0.24 -2.7
1,540,591 - DDA3937_RS06880 0.24 +0.7
1,540,591 - DDA3937_RS06880 0.24 +0.4
1,540,591 - DDA3937_RS06880 0.24 +0.2
1,540,591 - DDA3937_RS06880 0.24 +0.2
1,540,596 + DDA3937_RS06880 0.24 +1.1
1,540,596 + DDA3937_RS06880 0.24 +0.9
1,540,596 + DDA3937_RS06880 0.24 +1.7
1,540,596 + DDA3937_RS06880 0.24 -1.9
1,540,597 - DDA3937_RS06880 0.24 -1.5
1,540,597 - DDA3937_RS06880 0.24 +0.0
1,540,597 - DDA3937_RS06880 0.24 -2.5
1,540,680 - DDA3937_RS06880 0.27 +1.2
1,540,695 + DDA3937_RS06880 0.28 +1.0
1,540,696 - DDA3937_RS06880 0.28 +1.5
1,540,696 - DDA3937_RS06880 0.28 -0.1
1,540,700 - DDA3937_RS06880 0.28 +2.8
1,540,719 + DDA3937_RS06880 0.29 +0.3
1,540,719 + DDA3937_RS06880 0.29 -0.8
1,540,719 + DDA3937_RS06880 0.29 -1.4
1,540,719 + DDA3937_RS06880 0.29 -3.2
1,540,720 - DDA3937_RS06880 0.29 -0.9
1,540,720 - DDA3937_RS06880 0.29 +1.1
1,540,720 - DDA3937_RS06880 0.29 +0.3
1,540,740 + -1.4
1,540,741 - DDA3937_RS06880 0.30 +1.4

Or see this region's nucleotide sequence