Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03720 and DDA3937_RS03725 are separated by 54 nucleotides DDA3937_RS03725 and DDA3937_RS03730 are separated by 26 nucleotides DDA3937_RS03730 and DDA3937_RS03735 are separated by 24 nucleotides
DDA3937_RS03720: DDA3937_RS03720 - Gfo/Idh/MocA family oxidoreductase, at 823,050 to 824,183
_RS03720
DDA3937_RS03725: DDA3937_RS03725 - 5-dehydro-2-deoxygluconokinase, at 824,238 to 826,223
_RS03725
DDA3937_RS03730: DDA3937_RS03730 - myo-inosose-2 dehydratase, at 826,250 to 827,140
_RS03730
DDA3937_RS03735: DDA3937_RS03735 - 5-deoxy-glucuronate isomerase, at 827,165 to 827,992
_RS03735
Position (kb) 824
825
826
827 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 823.292 kb on + strand, within DDA3937_RS03720 at 823.443 kb on + strand, within DDA3937_RS03720 at 823.443 kb on + strand, within DDA3937_RS03720 at 823.443 kb on + strand, within DDA3937_RS03720 at 823.443 kb on + strand, within DDA3937_RS03720 at 823.443 kb on + strand, within DDA3937_RS03720 at 823.444 kb on - strand, within DDA3937_RS03720 at 823.444 kb on - strand, within DDA3937_RS03720 at 823.444 kb on - strand, within DDA3937_RS03720 at 823.444 kb on - strand, within DDA3937_RS03720 at 823.444 kb on - strand, within DDA3937_RS03720 at 823.444 kb on - strand, within DDA3937_RS03720 at 823.482 kb on - strand, within DDA3937_RS03720 at 823.539 kb on + strand, within DDA3937_RS03720 at 823.634 kb on + strand, within DDA3937_RS03720 at 823.634 kb on + strand, within DDA3937_RS03720 at 823.644 kb on + strand, within DDA3937_RS03720 at 823.645 kb on - strand, within DDA3937_RS03720 at 823.645 kb on - strand, within DDA3937_RS03720 at 823.669 kb on + strand, within DDA3937_RS03720 at 823.669 kb on + strand, within DDA3937_RS03720 at 823.669 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.842 kb on + strand, within DDA3937_RS03720 at 823.843 kb on - strand, within DDA3937_RS03720 at 823.843 kb on - strand, within DDA3937_RS03720 at 823.843 kb on - strand, within DDA3937_RS03720 at 823.843 kb on - strand, within DDA3937_RS03720 at 823.843 kb on - strand, within DDA3937_RS03720 at 823.843 kb on - strand, within DDA3937_RS03720 at 823.877 kb on + strand, within DDA3937_RS03720 at 823.877 kb on + strand, within DDA3937_RS03720 at 823.909 kb on - strand, within DDA3937_RS03720 at 824.237 kb on + strand at 824.237 kb on + strand at 824.237 kb on + strand at 824.238 kb on - strand at 824.270 kb on + strand at 824.271 kb on - strand at 824.271 kb on - strand at 824.271 kb on - strand at 824.346 kb on + strand at 824.346 kb on + strand at 824.376 kb on + strand at 824.568 kb on + strand, within DDA3937_RS03725 at 824.576 kb on + strand, within DDA3937_RS03725 at 824.577 kb on - strand, within DDA3937_RS03725 at 824.622 kb on + strand, within DDA3937_RS03725 at 824.622 kb on + strand, within DDA3937_RS03725 at 824.622 kb on + strand at 824.622 kb on + strand, within DDA3937_RS03725 at 824.622 kb on + strand, within DDA3937_RS03725 at 824.622 kb on + strand, within DDA3937_RS03725 at 824.622 kb on + strand, within DDA3937_RS03725 at 824.623 kb on - strand, within DDA3937_RS03725 at 824.623 kb on - strand, within DDA3937_RS03725 at 824.915 kb on - strand, within DDA3937_RS03725 at 825.002 kb on + strand, within DDA3937_RS03725 at 825.030 kb on - strand, within DDA3937_RS03725 at 825.109 kb on - strand, within DDA3937_RS03725 at 825.113 kb on - strand, within DDA3937_RS03725 at 825.144 kb on + strand, within DDA3937_RS03725 at 825.221 kb on + strand, within DDA3937_RS03725 at 825.221 kb on + strand, within DDA3937_RS03725 at 825.222 kb on - strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.225 kb on + strand, within DDA3937_RS03725 at 825.226 kb on - strand, within DDA3937_RS03725 at 825.226 kb on - strand, within DDA3937_RS03725 at 825.226 kb on - strand, within DDA3937_RS03725 at 825.226 kb on - strand, within DDA3937_RS03725 at 825.226 kb on - strand, within DDA3937_RS03725 at 825.226 kb on - strand at 825.226 kb on - strand, within DDA3937_RS03725 at 825.283 kb on + strand, within DDA3937_RS03725 at 825.283 kb on + strand, within DDA3937_RS03725 at 825.284 kb on - strand, within DDA3937_RS03725 at 825.284 kb on - strand, within DDA3937_RS03725 at 825.284 kb on - strand, within DDA3937_RS03725 at 825.556 kb on + strand, within DDA3937_RS03725 at 825.557 kb on - strand, within DDA3937_RS03725 at 825.873 kb on + strand, within DDA3937_RS03725 at 825.874 kb on - strand, within DDA3937_RS03725 at 825.898 kb on - strand, within DDA3937_RS03725 at 825.898 kb on - strand, within DDA3937_RS03725 at 825.898 kb on - strand, within DDA3937_RS03725 at 825.898 kb on - strand, within DDA3937_RS03725 at 825.993 kb on + strand, within DDA3937_RS03725 at 825.994 kb on - strand, within DDA3937_RS03725 at 826.042 kb on + strand at 826.042 kb on + strand at 826.042 kb on + strand at 826.042 kb on + strand at 826.042 kb on + strand at 826.042 kb on + strand at 826.043 kb on - strand at 826.043 kb on - strand at 826.043 kb on - strand at 826.182 kb on - strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.186 kb on - strand at 826.221 kb on + strand at 826.222 kb on - strand at 826.231 kb on + strand at 826.231 kb on + strand at 826.232 kb on - strand at 826.458 kb on - strand, within DDA3937_RS03730 at 826.643 kb on + strand, within DDA3937_RS03730 at 826.643 kb on + strand, within DDA3937_RS03730 at 826.651 kb on + strand, within DDA3937_RS03730 at 826.652 kb on - strand, within DDA3937_RS03730 at 826.673 kb on + strand, within DDA3937_RS03730 at 826.674 kb on - strand, within DDA3937_RS03730 at 826.704 kb on - strand, within DDA3937_RS03730 at 826.715 kb on - strand, within DDA3937_RS03730 at 826.746 kb on + strand, within DDA3937_RS03730 at 826.747 kb on - strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.808 kb on - strand at 826.808 kb on - strand, within DDA3937_RS03730 at 826.808 kb on - strand, within DDA3937_RS03730 at 826.808 kb on - strand, within DDA3937_RS03730 at 826.922 kb on + strand, within DDA3937_RS03730 at 826.923 kb on - strand, within DDA3937_RS03730 at 826.923 kb on - strand, within DDA3937_RS03730 at 826.923 kb on - strand, within DDA3937_RS03730 at 827.008 kb on + strand, within DDA3937_RS03730 at 827.021 kb on + strand, within DDA3937_RS03730 at 827.081 kb on + strand at 827.081 kb on + strand at 827.082 kb on - strand at 827.082 kb on - strand at 827.082 kb on - strand at 827.082 kb on - strand at 827.090 kb on - strand at 827.099 kb on - strand at 827.138 kb on + strand at 827.138 kb on + strand at 827.138 kb on + strand at 827.139 kb on - strand at 827.139 kb on - strand at 827.175 kb on + strand at 827.175 kb on + strand at 827.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 823,292 + DDA3937_RS03720 0.21 -2.5 823,443 + DDA3937_RS03720 0.35 -0.4 823,443 + DDA3937_RS03720 0.35 -3.7 823,443 + DDA3937_RS03720 0.35 -4.9 823,443 + DDA3937_RS03720 0.35 -0.3 823,443 + DDA3937_RS03720 0.35 -0.2 823,444 - DDA3937_RS03720 0.35 -1.3 823,444 - DDA3937_RS03720 0.35 +0.4 823,444 - DDA3937_RS03720 0.35 +2.7 823,444 - DDA3937_RS03720 0.35 +0.4 823,444 - DDA3937_RS03720 0.35 +0.8 823,444 - DDA3937_RS03720 0.35 +0.4 823,482 - DDA3937_RS03720 0.38 +1.3 823,539 + DDA3937_RS03720 0.43 -0.3 823,634 + DDA3937_RS03720 0.51 +1.8 823,634 + DDA3937_RS03720 0.51 +0.3 823,644 + DDA3937_RS03720 0.52 +0.4 823,645 - DDA3937_RS03720 0.52 -1.4 823,645 - DDA3937_RS03720 0.52 -1.1 823,669 + DDA3937_RS03720 0.55 -0.4 823,669 + DDA3937_RS03720 0.55 -2.6 823,669 + DDA3937_RS03720 0.55 +0.7 823,842 + DDA3937_RS03720 0.70 -0.3 823,842 + DDA3937_RS03720 0.70 -1.7 823,842 + DDA3937_RS03720 0.70 +2.4 823,842 + DDA3937_RS03720 0.70 -2.3 823,842 + DDA3937_RS03720 0.70 +1.3 823,842 + DDA3937_RS03720 0.70 -0.4 823,842 + DDA3937_RS03720 0.70 -0.4 823,842 + DDA3937_RS03720 0.70 +1.4 823,843 - DDA3937_RS03720 0.70 +0.4 823,843 - DDA3937_RS03720 0.70 +1.7 823,843 - DDA3937_RS03720 0.70 +1.1 823,843 - DDA3937_RS03720 0.70 +1.3 823,843 - DDA3937_RS03720 0.70 -2.9 823,843 - DDA3937_RS03720 0.70 +0.2 823,877 + DDA3937_RS03720 0.73 -0.6 823,877 + DDA3937_RS03720 0.73 -0.9 823,909 - DDA3937_RS03720 0.76 -1.7 824,237 + +0.9 824,237 + -1.0 824,237 + -1.9 824,238 - +0.1 824,270 + -0.1 824,271 - +0.2 824,271 - -1.1 824,271 - +0.4 824,346 + -2.2 824,346 + -0.3 824,376 + -0.3 824,568 + DDA3937_RS03725 0.17 +1.2 824,576 + DDA3937_RS03725 0.17 -1.6 824,577 - DDA3937_RS03725 0.17 +0.3 824,622 + DDA3937_RS03725 0.19 -1.4 824,622 + DDA3937_RS03725 0.19 -3.2 824,622 + +0.7 824,622 + DDA3937_RS03725 0.19 -0.6 824,622 + DDA3937_RS03725 0.19 +0.2 824,622 + DDA3937_RS03725 0.19 -0.1 824,622 + DDA3937_RS03725 0.19 -0.5 824,623 - DDA3937_RS03725 0.19 +1.2 824,623 - DDA3937_RS03725 0.19 -1.4 824,915 - DDA3937_RS03725 0.34 -1.4 825,002 + DDA3937_RS03725 0.38 -0.8 825,030 - DDA3937_RS03725 0.40 -0.3 825,109 - DDA3937_RS03725 0.44 +0.4 825,113 - DDA3937_RS03725 0.44 -2.9 825,144 + DDA3937_RS03725 0.46 +0.5 825,221 + DDA3937_RS03725 0.49 -0.2 825,221 + DDA3937_RS03725 0.49 -3.0 825,222 - DDA3937_RS03725 0.50 -0.0 825,225 + DDA3937_RS03725 0.50 +0.0 825,225 + DDA3937_RS03725 0.50 +1.5 825,225 + DDA3937_RS03725 0.50 +0.9 825,225 + DDA3937_RS03725 0.50 +1.8 825,225 + DDA3937_RS03725 0.50 -1.0 825,225 + DDA3937_RS03725 0.50 -2.3 825,225 + DDA3937_RS03725 0.50 +0.7 825,225 + DDA3937_RS03725 0.50 -0.1 825,225 + DDA3937_RS03725 0.50 -1.7 825,225 + DDA3937_RS03725 0.50 +1.9 825,225 + DDA3937_RS03725 0.50 +0.3 825,226 - DDA3937_RS03725 0.50 +1.0 825,226 - DDA3937_RS03725 0.50 -1.1 825,226 - DDA3937_RS03725 0.50 +1.5 825,226 - DDA3937_RS03725 0.50 -4.0 825,226 - DDA3937_RS03725 0.50 +1.6 825,226 - -1.7 825,226 - DDA3937_RS03725 0.50 -2.9 825,283 + DDA3937_RS03725 0.53 -0.4 825,283 + DDA3937_RS03725 0.53 -0.5 825,284 - DDA3937_RS03725 0.53 -0.6 825,284 - DDA3937_RS03725 0.53 -1.9 825,284 - DDA3937_RS03725 0.53 -1.3 825,556 + DDA3937_RS03725 0.66 -0.2 825,557 - DDA3937_RS03725 0.66 -1.4 825,873 + DDA3937_RS03725 0.82 +1.1 825,874 - DDA3937_RS03725 0.82 -1.4 825,898 - DDA3937_RS03725 0.84 -0.4 825,898 - DDA3937_RS03725 0.84 +1.1 825,898 - DDA3937_RS03725 0.84 +1.3 825,898 - DDA3937_RS03725 0.84 -0.7 825,993 + DDA3937_RS03725 0.88 -1.1 825,994 - DDA3937_RS03725 0.88 -0.4 826,042 + +1.4 826,042 + +0.2 826,042 + -0.3 826,042 + +1.7 826,042 + +2.1 826,042 + -3.6 826,043 - +0.2 826,043 - +1.1 826,043 - -0.5 826,182 - -1.1 826,185 + -0.9 826,185 + -0.5 826,185 + -2.1 826,185 + +1.8 826,185 + -0.6 826,186 - -0.1 826,221 + +1.8 826,222 - +1.1 826,231 + -2.9 826,231 + -0.1 826,232 - +1.4 826,458 - DDA3937_RS03730 0.23 +0.6 826,643 + DDA3937_RS03730 0.44 -2.7 826,643 + DDA3937_RS03730 0.44 +0.3 826,651 + DDA3937_RS03730 0.45 -1.4 826,652 - DDA3937_RS03730 0.45 -1.8 826,673 + DDA3937_RS03730 0.47 -0.3 826,674 - DDA3937_RS03730 0.48 -1.4 826,704 - DDA3937_RS03730 0.51 +0.6 826,715 - DDA3937_RS03730 0.52 -3.4 826,746 + DDA3937_RS03730 0.56 +0.1 826,747 - DDA3937_RS03730 0.56 +1.4 826,807 + DDA3937_RS03730 0.63 -0.0 826,807 + DDA3937_RS03730 0.63 -0.7 826,807 + DDA3937_RS03730 0.63 -2.3 826,807 + DDA3937_RS03730 0.63 +0.6 826,808 - +2.0 826,808 - DDA3937_RS03730 0.63 -3.3 826,808 - DDA3937_RS03730 0.63 +1.3 826,808 - DDA3937_RS03730 0.63 +0.9 826,922 + DDA3937_RS03730 0.75 +1.3 826,923 - DDA3937_RS03730 0.76 -2.9 826,923 - DDA3937_RS03730 0.76 -0.8 826,923 - DDA3937_RS03730 0.76 -0.4 827,008 + DDA3937_RS03730 0.85 +0.7 827,021 + DDA3937_RS03730 0.87 -0.7 827,081 + -3.1 827,081 + -0.1 827,082 - -0.2 827,082 - -0.2 827,082 - -1.4 827,082 - +1.6 827,090 - +1.6 827,099 - +1.3 827,138 + +1.6 827,138 + -0.2 827,138 + -0.1 827,139 - +2.6 827,139 - +0.3 827,175 + -0.3 827,175 + +0.1 827,176 - -1.3
Or see this region's nucleotide sequence