Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02500

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02490 and DDA3937_RS02495 are separated by 27 nucleotidesDDA3937_RS02495 and DDA3937_RS02500 are separated by 250 nucleotidesDDA3937_RS02500 and DDA3937_RS02505 are separated by 47 nucleotidesDDA3937_RS02505 and DDA3937_RS02510 overlap by 4 nucleotides DDA3937_RS02490: DDA3937_RS02490 - amidohydrolase, at 551,949 to 553,118 _RS02490 DDA3937_RS02495: DDA3937_RS02495 - hypothetical protein, at 553,146 to 553,388 _RS02495 DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454 _RS02500 DDA3937_RS02505: DDA3937_RS02505 - ABC transporter substrate-binding protein, at 554,502 to 555,443 _RS02505 DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438 _RS02510 Position (kb) 553 554 555Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 552.763 kb on - strand, within DDA3937_RS02490at 552.763 kb on - strand, within DDA3937_RS02490at 552.946 kb on - strand, within DDA3937_RS02490at 552.953 kb on - strand, within DDA3937_RS02490at 552.953 kb on - strand, within DDA3937_RS02490at 552.972 kb on + strand, within DDA3937_RS02490at 552.973 kb on - strand, within DDA3937_RS02490at 553.037 kb on + strandat 553.049 kb on + strandat 553.128 kb on + strandat 553.128 kb on + strandat 553.129 kb on - strandat 553.129 kb on - strandat 553.129 kb on - strandat 553.129 kb on - strandat 553.129 kb on - strandat 553.148 kb on - strandat 553.157 kb on + strandat 553.158 kb on - strandat 553.217 kb on + strand, within DDA3937_RS02495at 553.415 kb on - strandat 553.415 kb on - strandat 553.467 kb on + strandat 553.468 kb on - strandat 553.468 kb on - strandat 553.473 kb on - strandat 553.516 kb on - strandat 553.516 kb on - strandat 553.525 kb on - strandat 553.525 kb on - strandat 553.525 kb on - strandat 553.525 kb on - strandat 553.670 kb on + strandat 553.671 kb on - strandat 553.693 kb on + strandat 553.694 kb on - strandat 553.694 kb on - strandat 553.719 kb on + strandat 553.945 kb on + strand, within DDA3937_RS02500at 553.945 kb on + strand, within DDA3937_RS02500at 553.945 kb on + strand, within DDA3937_RS02500at 553.945 kb on + strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 553.946 kb on - strand, within DDA3937_RS02500at 554.046 kb on - strand, within DDA3937_RS02500at 554.226 kb on - strand, within DDA3937_RS02500at 554.228 kb on + strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.229 kb on - strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.334 kb on + strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.335 kb on - strand, within DDA3937_RS02500at 554.338 kb on + strand, within DDA3937_RS02500at 554.339 kb on - strand, within DDA3937_RS02500at 554.436 kb on + strandat 554.436 kb on + strandat 554.437 kb on - strandat 554.450 kb on + strandat 554.479 kb on + strandat 554.479 kb on + strandat 554.700 kb on + strand, within DDA3937_RS02505at 554.761 kb on - strand, within DDA3937_RS02505at 554.820 kb on + strand, within DDA3937_RS02505at 554.820 kb on + strand, within DDA3937_RS02505at 554.821 kb on - strand, within DDA3937_RS02505at 554.821 kb on - strand, within DDA3937_RS02505at 554.821 kb on - strand, within DDA3937_RS02505at 554.884 kb on + strand, within DDA3937_RS02505at 554.949 kb on + strand, within DDA3937_RS02505at 555.045 kb on - strand, within DDA3937_RS02505at 555.045 kb on - strand, within DDA3937_RS02505at 555.076 kb on + strand, within DDA3937_RS02505at 555.076 kb on + strand, within DDA3937_RS02505at 555.076 kb on + strand, within DDA3937_RS02505at 555.085 kb on - strand, within DDA3937_RS02505at 555.101 kb on + strand, within DDA3937_RS02505at 555.123 kb on + strand, within DDA3937_RS02505at 555.124 kb on - strand, within DDA3937_RS02505at 555.124 kb on - strand, within DDA3937_RS02505at 555.346 kb on - strand, within DDA3937_RS02505at 555.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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552,763 - DDA3937_RS02490 0.70 -0.2
552,763 - DDA3937_RS02490 0.70 -4.0
552,946 - DDA3937_RS02490 0.85 -0.2
552,953 - DDA3937_RS02490 0.86 -0.1
552,953 - DDA3937_RS02490 0.86 -0.5
552,972 + DDA3937_RS02490 0.87 -1.2
552,973 - DDA3937_RS02490 0.88 +1.2
553,037 + -1.2
553,049 + +0.6
553,128 + +1.5
553,128 + -0.4
553,129 - +1.2
553,129 - -2.9
553,129 - +0.5
553,129 - -0.7
553,129 - -1.4
553,148 - -0.1
553,157 + -0.0
553,158 - -2.9
553,217 + DDA3937_RS02495 0.29 -3.2
553,415 - -0.0
553,415 - -0.5
553,467 + -3.9
553,468 - -1.4
553,468 - +0.6
553,473 - +0.6
553,516 - -2.4
553,516 - -1.3
553,525 - -1.6
553,525 - +0.2
553,525 - -1.3
553,525 - +0.0
553,670 + -2.4
553,671 - +0.0
553,693 + +1.3
553,694 - -1.4
553,694 - -2.4
553,719 + +2.3
553,945 + DDA3937_RS02500 0.38 +0.3
553,945 + DDA3937_RS02500 0.38 -0.7
553,945 + DDA3937_RS02500 0.38 -1.9
553,945 + DDA3937_RS02500 0.38 +1.4
553,946 - DDA3937_RS02500 0.38 -0.1
553,946 - DDA3937_RS02500 0.38 +0.6
553,946 - DDA3937_RS02500 0.38 +1.4
553,946 - DDA3937_RS02500 0.38 -1.9
553,946 - DDA3937_RS02500 0.38 +0.6
553,946 - DDA3937_RS02500 0.38 -0.3
553,946 - DDA3937_RS02500 0.38 -2.7
554,046 - DDA3937_RS02500 0.50 +0.6
554,226 - DDA3937_RS02500 0.72 -0.9
554,228 + DDA3937_RS02500 0.72 +0.8
554,229 - DDA3937_RS02500 0.72 +1.1
554,229 - DDA3937_RS02500 0.72 -1.1
554,229 - DDA3937_RS02500 0.72 -0.7
554,229 - DDA3937_RS02500 0.72 -2.0
554,334 + DDA3937_RS02500 0.85 +0.1
554,334 + DDA3937_RS02500 0.85 -1.6
554,334 + DDA3937_RS02500 0.85 -0.1
554,334 + DDA3937_RS02500 0.85 +0.1
554,334 + DDA3937_RS02500 0.85 +0.3
554,335 - DDA3937_RS02500 0.85 -0.8
554,335 - DDA3937_RS02500 0.85 +0.0
554,335 - DDA3937_RS02500 0.85 -0.7
554,335 - DDA3937_RS02500 0.85 -0.0
554,335 - DDA3937_RS02500 0.85 +1.0
554,335 - DDA3937_RS02500 0.85 -3.7
554,335 - DDA3937_RS02500 0.85 -1.9
554,335 - DDA3937_RS02500 0.85 +0.4
554,335 - DDA3937_RS02500 0.85 -0.0
554,335 - DDA3937_RS02500 0.85 -0.6
554,338 + DDA3937_RS02500 0.86 +0.3
554,339 - DDA3937_RS02500 0.86 +1.0
554,436 + -1.0
554,436 + +1.2
554,437 - +0.2
554,450 + +0.2
554,479 + +1.5
554,479 + +0.4
554,700 + DDA3937_RS02505 0.21 +0.1
554,761 - DDA3937_RS02505 0.27 -0.8
554,820 + DDA3937_RS02505 0.34 -4.3
554,820 + DDA3937_RS02505 0.34 -0.6
554,821 - DDA3937_RS02505 0.34 +0.8
554,821 - DDA3937_RS02505 0.34 -0.3
554,821 - DDA3937_RS02505 0.34 -0.4
554,884 + DDA3937_RS02505 0.41 +0.6
554,949 + DDA3937_RS02505 0.47 +0.3
555,045 - DDA3937_RS02505 0.58 +1.3
555,045 - DDA3937_RS02505 0.58 -0.1
555,076 + DDA3937_RS02505 0.61 -0.2
555,076 + DDA3937_RS02505 0.61 -0.9
555,076 + DDA3937_RS02505 0.61 -4.4
555,085 - DDA3937_RS02505 0.62 -1.1
555,101 + DDA3937_RS02505 0.64 +0.5
555,123 + DDA3937_RS02505 0.66 -1.6
555,124 - DDA3937_RS02505 0.66 +0.2
555,124 - DDA3937_RS02505 0.66 +2.5
555,346 - DDA3937_RS02505 0.90 +0.4
555,360 + -4.0

Or see this region's nucleotide sequence