Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21950

Experiment: Stem-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04400 and DDA3937_RS21950 are separated by 121 nucleotidesDDA3937_RS21950 and DDA3937_RS04405 are separated by 416 nucleotidesDDA3937_RS04405 and DDA3937_RS04410 are separated by 35 nucleotides DDA3937_RS04400: DDA3937_RS04400 - glycosyltransferase, at 971,163 to 972,437 _RS04400 DDA3937_RS21950: DDA3937_RS21950 - helix-turn-helix domain-containing protein, at 972,559 to 972,846 _RS21950 DDA3937_RS04405: DDA3937_RS04405 - GNAT family N-acetyltransferase, at 973,263 to 973,676 _RS04405 DDA3937_RS04410: DDA3937_RS04410 - PAS and helix-turn-helix domain-containing protein, at 973,712 to 974,401 _RS04410 Position (kb) 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 971.616 kb on + strand, within DDA3937_RS04400at 971.616 kb on + strand, within DDA3937_RS04400at 971.617 kb on - strand, within DDA3937_RS04400at 971.829 kb on + strand, within DDA3937_RS04400at 971.857 kb on + strand, within DDA3937_RS04400at 971.858 kb on - strand, within DDA3937_RS04400at 972.176 kb on + strand, within DDA3937_RS04400at 972.351 kb on - strandat 972.455 kb on + strandat 972.455 kb on + strandat 972.455 kb on + strandat 972.456 kb on - strandat 972.459 kb on + strandat 972.459 kb on + strandat 972.460 kb on - strandat 972.460 kb on - strandat 972.495 kb on - strandat 972.529 kb on + strandat 972.529 kb on + strandat 972.579 kb on + strandat 972.588 kb on + strand, within DDA3937_RS21950at 972.622 kb on - strand, within DDA3937_RS21950at 972.642 kb on - strand, within DDA3937_RS21950at 972.677 kb on - strand, within DDA3937_RS21950at 972.677 kb on - strand, within DDA3937_RS21950at 972.719 kb on + strand, within DDA3937_RS21950at 972.719 kb on + strand, within DDA3937_RS21950at 972.719 kb on + strand, within DDA3937_RS21950at 972.720 kb on - strandat 972.720 kb on - strand, within DDA3937_RS21950at 972.720 kb on - strand, within DDA3937_RS21950at 972.720 kb on - strand, within DDA3937_RS21950at 972.776 kb on - strand, within DDA3937_RS21950at 972.784 kb on - strand, within DDA3937_RS21950at 972.839 kb on - strandat 972.841 kb on - strandat 972.847 kb on + strandat 972.848 kb on - strandat 972.848 kb on - strandat 972.858 kb on + strandat 972.859 kb on - strandat 972.897 kb on + strandat 972.921 kb on + strandat 972.922 kb on - strandat 972.922 kb on - strandat 972.985 kb on + strandat 973.016 kb on + strandat 973.027 kb on + strandat 973.043 kb on - strandat 973.044 kb on + strandat 973.056 kb on + strandat 973.097 kb on + strandat 973.101 kb on - strandat 973.152 kb on - strandat 973.160 kb on - strandat 973.251 kb on - strandat 973.260 kb on - strandat 973.260 kb on - strandat 973.308 kb on + strand, within DDA3937_RS04405at 973.308 kb on + strand, within DDA3937_RS04405at 973.309 kb on - strand, within DDA3937_RS04405at 973.334 kb on + strand, within DDA3937_RS04405at 973.358 kb on + strand, within DDA3937_RS04405at 973.453 kb on - strand, within DDA3937_RS04405at 973.463 kb on + strand, within DDA3937_RS04405at 973.464 kb on - strand, within DDA3937_RS04405at 973.478 kb on + strand, within DDA3937_RS04405at 973.479 kb on - strand, within DDA3937_RS04405at 973.479 kb on - strand, within DDA3937_RS04405at 973.544 kb on + strand, within DDA3937_RS04405at 973.551 kb on + strand, within DDA3937_RS04405at 973.551 kb on + strand, within DDA3937_RS04405at 973.551 kb on + strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.552 kb on - strand, within DDA3937_RS04405at 973.566 kb on - strand, within DDA3937_RS04405at 973.603 kb on - strand, within DDA3937_RS04405at 973.612 kb on - strand, within DDA3937_RS04405at 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.637 kb on + strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.638 kb on - strandat 973.706 kb on - strandat 973.742 kb on + strandat 973.743 kb on - strandat 973.743 kb on - strandat 973.745 kb on - strandat 973.816 kb on + strand, within DDA3937_RS04410at 973.820 kb on + strand, within DDA3937_RS04410at 973.821 kb on - strand, within DDA3937_RS04410at 973.844 kb on + strand, within DDA3937_RS04410

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Atlantic
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971,616 + DDA3937_RS04400 0.36 +0.2
971,616 + DDA3937_RS04400 0.36 +0.2
971,617 - DDA3937_RS04400 0.36 +0.9
971,829 + DDA3937_RS04400 0.52 +0.4
971,857 + DDA3937_RS04400 0.54 +0.8
971,858 - DDA3937_RS04400 0.55 +0.3
972,176 + DDA3937_RS04400 0.79 -1.9
972,351 - +1.3
972,455 + -0.9
972,455 + +0.8
972,455 + +0.2
972,456 - -2.0
972,459 + +1.1
972,459 + +1.1
972,460 - -1.7
972,460 - -1.5
972,495 - +0.5
972,529 + -0.3
972,529 + +1.2
972,579 + -3.0
972,588 + DDA3937_RS21950 0.10 -3.2
972,622 - DDA3937_RS21950 0.22 +1.8
972,642 - DDA3937_RS21950 0.29 +0.2
972,677 - DDA3937_RS21950 0.41 -2.9
972,677 - DDA3937_RS21950 0.41 -0.2
972,719 + DDA3937_RS21950 0.56 -0.5
972,719 + DDA3937_RS21950 0.56 +1.0
972,719 + DDA3937_RS21950 0.56 -3.6
972,720 - -1.3
972,720 - DDA3937_RS21950 0.56 -1.1
972,720 - DDA3937_RS21950 0.56 +1.7
972,720 - DDA3937_RS21950 0.56 +1.2
972,776 - DDA3937_RS21950 0.75 +1.0
972,784 - DDA3937_RS21950 0.78 -1.0
972,839 - +2.8
972,841 - +0.6
972,847 + -2.3
972,848 - -2.3
972,848 - +0.2
972,858 + -0.4
972,859 - -2.5
972,897 + -0.0
972,921 + +0.7
972,922 - -0.2
972,922 - -2.2
972,985 + +2.9
973,016 + -2.7
973,027 + -0.2
973,043 - -2.9
973,044 + +0.4
973,056 + +2.2
973,097 + +0.2
973,101 - -1.6
973,152 - +0.2
973,160 - -1.6
973,251 - +0.2
973,260 - +1.4
973,260 - -1.2
973,308 + DDA3937_RS04405 0.11 +1.2
973,308 + DDA3937_RS04405 0.11 +1.2
973,309 - DDA3937_RS04405 0.11 -0.9
973,334 + DDA3937_RS04405 0.17 -0.3
973,358 + DDA3937_RS04405 0.23 -1.9
973,453 - DDA3937_RS04405 0.46 +1.0
973,463 + DDA3937_RS04405 0.48 -1.4
973,464 - DDA3937_RS04405 0.49 -0.2
973,478 + DDA3937_RS04405 0.52 +0.4
973,479 - DDA3937_RS04405 0.52 +0.7
973,479 - DDA3937_RS04405 0.52 +1.0
973,544 + DDA3937_RS04405 0.68 +1.1
973,551 + DDA3937_RS04405 0.70 +0.6
973,551 + DDA3937_RS04405 0.70 +0.4
973,551 + DDA3937_RS04405 0.70 +0.4
973,552 - DDA3937_RS04405 0.70 -0.2
973,552 - DDA3937_RS04405 0.70 +1.2
973,552 - DDA3937_RS04405 0.70 -1.2
973,552 - DDA3937_RS04405 0.70 -1.9
973,552 - DDA3937_RS04405 0.70 -1.6
973,552 - DDA3937_RS04405 0.70 +1.1
973,566 - DDA3937_RS04405 0.73 +0.3
973,603 - DDA3937_RS04405 0.82 -1.5
973,612 - DDA3937_RS04405 0.84 -3.1
973,637 + -0.6
973,637 + +1.0
973,637 + +1.7
973,637 + +1.1
973,637 + +0.6
973,637 + -2.5
973,638 - -0.7
973,638 - +0.5
973,638 - +0.3
973,638 - -0.6
973,638 - +1.3
973,706 - +0.1
973,742 + -2.0
973,743 - -0.3
973,743 - +3.5
973,745 - +0.2
973,816 + DDA3937_RS04410 0.15 -1.1
973,820 + DDA3937_RS04410 0.16 -0.9
973,821 - DDA3937_RS04410 0.16 -0.2
973,844 + DDA3937_RS04410 0.19 +1.1

Or see this region's nucleotide sequence