Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12150

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,758,137	+		DDA3937_RS12145	0.51	+0.5
2,758,137	+		DDA3937_RS12145	0.51	+0.1
2,758,137	+		DDA3937_RS12145	0.51	+0.7
2,758,137	+		DDA3937_RS12145	0.51	-2.8
2,758,137	+		DDA3937_RS12145	0.51	+1.0
2,758,137	+		DDA3937_RS12145	0.51	-0.8
2,758,138	-		DDA3937_RS12145	0.52	-2.2
2,758,138	-		DDA3937_RS12145	0.52	+0.5
2,758,138	-				-0.6
2,758,138	-				-0.2
2,758,213	-		DDA3937_RS12145	0.57	-0.2
2,758,213	-		DDA3937_RS12145	0.57	+0.0
2,758,224	+		DDA3937_RS12145	0.58	+0.9
2,758,224	+		DDA3937_RS12145	0.58	+1.4
2,758,225	-		DDA3937_RS12145	0.58	+1.6
2,758,225	-		DDA3937_RS12145	0.58	+2.9
2,758,225	-		DDA3937_RS12145	0.58	-0.2
2,758,233	+		DDA3937_RS12145	0.59	+0.4
2,758,521	+		DDA3937_RS12145	0.81	-1.6
2,758,522	-		DDA3937_RS12145	0.81	-0.4
2,758,522	-		DDA3937_RS12145	0.81	+0.7
2,758,522	-		DDA3937_RS12145	0.81	-2.8
2,758,707	-				+0.3
2,758,707	-				+1.8
2,758,721	+				-2.9
2,758,721	+				+0.1
2,758,722	-				-0.1
2,758,725	+				+0.2
2,758,725	+				+0.4
2,758,725	+				-3.3
2,758,725	+				+0.2
2,758,725	+				+0.9
2,758,725	+				+1.9
2,758,725	+				-0.2
2,758,726	-				+1.5
2,758,726	-				-1.0
2,758,726	-				+0.1
2,758,726	-				+1.4
2,758,726	-				-0.2
2,758,746	+				+4.3
2,758,747	-				-1.1
2,758,747	-				+0.5
2,758,748	+				-1.1
2,758,809	+				-0.4
2,758,809	+				-2.2
2,758,809	+				-4.2
2,758,810	-				+0.4
2,758,810	-				+1.3
2,758,810	-				-2.3
2,758,810	-				+1.3
2,758,810	-				-2.2
2,758,810	-				+0.4
2,758,810	-				-0.1
2,758,810	-				+0.2
2,758,812	-				-0.9
2,758,812	-				+0.3
2,758,886	-				+1.5
2,758,920	+				+0.5
2,758,920	+				-0.4
2,758,921	-				-2.6
2,758,921	-				+0.8
2,758,953	+				-0.6
2,758,954	-				+0.7
2,758,954	-				-0.1
2,758,954	-				-2.4
2,758,954	-				-0.7
2,758,982	+				+0.6
2,758,982	+				-2.2
2,758,983	-				-1.3
2,758,983	-				+0.5
2,759,071	+				-0.9
2,759,071	+				-0.6
2,759,072	-				+0.2
2,759,076	+				-0.4
2,759,076	+				-3.1
2,759,076	+				-1.3
2,759,077	-				-0.4
2,759,077	-				-0.2
2,759,111	+				+0.1
2,759,111	+				+0.1
2,759,151	-				+1.0
2,759,151	-				+2.5
2,759,151	-				-3.1
2,759,218	+				-2.0
2,759,218	+				+2.8
2,759,219	-				-1.8
2,759,320	+		DDA3937_RS12150	0.13	+0.2
2,759,320	+		DDA3937_RS12150	0.13	-0.9
2,759,320	+		DDA3937_RS12150	0.13	+0.4
2,759,320	+		DDA3937_RS12150	0.13	+2.6
2,759,320	+				+1.9
2,759,320	+		DDA3937_RS12150	0.13	+0.0
2,759,320	+		DDA3937_RS12150	0.13	-2.4
2,759,320	+		DDA3937_RS12150	0.13	+0.4
2,759,321	-		DDA3937_RS12150	0.13	+0.9
2,759,321	-		DDA3937_RS12150	0.13	+0.5
2,759,321	-		DDA3937_RS12150	0.13	-0.9
2,759,321	-		DDA3937_RS12150	0.13	-3.3
2,759,321	-		DDA3937_RS12150	0.13	+2.9
2,759,324	+		DDA3937_RS12150	0.13	-0.3
2,759,324	+		DDA3937_RS12150	0.13	+0.2
2,759,324	+		DDA3937_RS12150	0.13	-0.1
2,759,325	-		DDA3937_RS12150	0.13	-0.7
2,759,325	-		DDA3937_RS12150	0.13	+1.9
2,759,325	-		DDA3937_RS12150	0.13	+0.8
2,759,325	-		DDA3937_RS12150	0.13	+0.4
2,759,361	-		DDA3937_RS12150	0.15	-0.9
2,759,482	-		DDA3937_RS12150	0.22	-2.0
2,759,482	-		DDA3937_RS12150	0.22	-2.0
2,759,544	-		DDA3937_RS12150	0.25	-3.2
2,759,548	+		DDA3937_RS12150	0.25	-0.8
2,759,548	+		DDA3937_RS12150	0.25	+0.1
2,759,564	+		DDA3937_RS12150	0.26	-0.6
2,759,564	+		DDA3937_RS12150	0.26	-0.8
2,759,564	+		DDA3937_RS12150	0.26	-0.2
2,759,565	-		DDA3937_RS12150	0.26	+1.0
2,759,569	+		DDA3937_RS12150	0.27	+0.2
2,759,569	+		DDA3937_RS12150	0.27	+0.7
2,759,610	+		DDA3937_RS12150	0.29	+3.5
2,759,623	-		DDA3937_RS12150	0.29	-2.2
2,759,623	-		DDA3937_RS12150	0.29	+1.6
2,759,623	-		DDA3937_RS12150	0.29	+1.2
2,759,783	+		DDA3937_RS12150	0.38	+0.7
2,759,783	+		DDA3937_RS12150	0.38	+1.3
2,759,784	-		DDA3937_RS12150	0.38	-0.2
2,759,784	-		DDA3937_RS12150	0.38	-1.2
2,759,784	-		DDA3937_RS12150	0.38	-1.6
2,759,784	-		DDA3937_RS12150	0.38	+0.7
2,759,856	+		DDA3937_RS12150	0.42	-0.3
2,759,881	+		DDA3937_RS12150	0.44	-0.4
2,759,910	+		DDA3937_RS12150	0.45	-0.2
2,759,911	-		DDA3937_RS12150	0.45	+0.4
2,760,063	-		DDA3937_RS12150	0.54	-0.6
2,760,083	+		DDA3937_RS12150	0.55	-1.2
2,760,083	+		DDA3937_RS12150	0.55	+1.0
2,760,083	+		DDA3937_RS12150	0.55	+1.2
2,760,084	-		DDA3937_RS12150	0.55	-0.4
2,760,084	-		DDA3937_RS12150	0.55	-0.4
2,760,154	+		DDA3937_RS12150	0.59	+0.6
2,760,157	+		DDA3937_RS12150	0.59	-2.0
2,760,158	-		DDA3937_RS12150	0.59	-2.0
2,760,178	+		DDA3937_RS12150	0.60	-0.4
2,760,178	+		DDA3937_RS12150	0.60	+1.4
2,760,179	-		DDA3937_RS12150	0.60	-0.3
2,760,179	-		DDA3937_RS12150	0.60	-1.6
2,760,179	-		DDA3937_RS12150	0.60	+1.0
2,760,179	-		DDA3937_RS12150	0.60	-0.4
2,760,179	-		DDA3937_RS12150	0.60	+0.4
2,760,180	+		DDA3937_RS12150	0.60	-0.1
2,760,180	+		DDA3937_RS12150	0.60	+0.2
2,760,181	-		DDA3937_RS12150	0.60	-1.2
2,760,181	-		DDA3937_RS12150	0.60	+0.0
2,760,181	-		DDA3937_RS12150	0.60	-3.0
2,760,181	-		DDA3937_RS12150	0.60	-0.9
2,760,294	-		DDA3937_RS12150	0.66	-1.2
2,760,363	+		DDA3937_RS12150	0.70	+1.0
2,760,363	+		DDA3937_RS12150	0.70	-2.2
2,760,363	+		DDA3937_RS12150	0.70	-0.6
2,760,363	+		DDA3937_RS12150	0.70	+1.2
2,760,363	+		DDA3937_RS12150	0.70	-3.4
2,760,363	+		DDA3937_RS12150	0.70	+0.8
2,760,364	-		DDA3937_RS12150	0.70	-0.3
2,760,364	-		DDA3937_RS12150	0.70	+0.9
2,760,364	-		DDA3937_RS12150	0.70	-3.9
2,760,364	-		DDA3937_RS12150	0.70	-0.6
2,760,364	-		DDA3937_RS12150	0.70	+2.5
2,760,364	-		DDA3937_RS12150	0.70	+0.8
2,760,364	-		DDA3937_RS12150	0.70	+1.4
2,760,364	-		DDA3937_RS12150	0.70	-0.4
2,760,364	-		DDA3937_RS12150	0.70	+0.6
2,760,364	-		DDA3937_RS12150	0.70	+0.7
2,760,364	-		DDA3937_RS12150	0.70	-2.7
2,760,364	-		DDA3937_RS12150	0.70	+0.7
2,760,365	+		DDA3937_RS12150	0.70	+0.4
2,760,365	+		DDA3937_RS12150	0.70	+0.1
2,760,365	+		DDA3937_RS12150	0.70	-0.2
2,760,365	+		DDA3937_RS12150	0.70	+0.1
2,760,397	+		DDA3937_RS12150	0.72	-0.1
2,760,398	-		DDA3937_RS12150	0.72	+1.0
2,760,475	-		DDA3937_RS12150	0.76	-2.0
2,760,552	+		DDA3937_RS12150	0.81	-1.3
2,760,552	+		DDA3937_RS12150	0.81	+1.0
2,760,552	+		DDA3937_RS12150	0.81	-0.1
2,760,553	-		DDA3937_RS12150	0.81	+1.6
2,760,553	-		DDA3937_RS12150	0.81	-1.4
2,760,555	-		DDA3937_RS12150	0.81	+0.1
2,760,555	-		DDA3937_RS12150	0.81	-0.6
2,760,555	-		DDA3937_RS12150	0.81	+1.5
2,760,641	+		DDA3937_RS12150	0.86	+0.0
2,760,716	+		DDA3937_RS12150	0.90	-1.0
2,760,716	+		DDA3937_RS12150	0.90	-2.0
2,760,717	-		DDA3937_RS12150	0.90	+1.7
2,760,867	+				+0.8
2,760,867	+				+1.6
2,760,868	-				+1.9
2,760,868	-				+0.0
2,760,887	+				+1.0
2,760,887	+				-1.4
2,760,887	+				-3.1
2,760,887	+				+0.9
2,760,887	+				-0.2
2,760,887	+				+0.1
2,760,888	-				-2.2
2,760,888	-				+2.0
2,760,888	-				+0.4
2,760,888	-				+0.1
2,760,918	-				+0.1
2,760,924	-				-2.0
2,760,964	+				-3.4
2,760,984	-				+0.8
2,761,048	+				-0.2
2,761,048	+				+1.4
2,761,048	+				+0.5
2,761,048	+				+0.7
2,761,048	+				+0.1
2,761,048	+				-1.0
2,761,049	-				-0.6
2,761,049	-				+0.4
2,761,051	-				+1.5
2,761,051	-				+0.7
2,761,051	-				+0.4
2,761,206	-				+0.4
2,761,214	+				+1.9
2,761,228	+				+0.0
2,761,229	-				-1.8
2,761,266	+				+1.3
2,761,347	+		DDA3937_RS12155	0.12	-2.4
2,761,347	+		DDA3937_RS12155	0.12	+1.8
2,761,348	-		DDA3937_RS12155	0.12	-2.4
2,761,389	+		DDA3937_RS12155	0.14	+1.0
2,761,389	+		DDA3937_RS12155	0.14	-1.0
2,761,392	+		DDA3937_RS12155	0.14	-0.0
2,761,393	-		DDA3937_RS12155	0.14	-0.4
2,761,537	+		DDA3937_RS12155	0.23	+0.4
2,761,660	+		DDA3937_RS12155	0.30	-2.2
2,761,660	+		DDA3937_RS12155	0.30	+0.1
2,761,718	-		DDA3937_RS12155	0.34	-0.4
2,761,718	-		DDA3937_RS12155	0.34	-1.2
2,761,723	+		DDA3937_RS12155	0.34	-2.6
2,761,723	+		DDA3937_RS12155	0.34	-0.2
2,761,724	-		DDA3937_RS12155	0.34	-0.8
2,761,728	+		DDA3937_RS12155	0.34	+0.5
2,761,728	+		DDA3937_RS12155	0.34	+0.9
2,761,728	+		DDA3937_RS12155	0.34	-0.6
2,761,729	-		DDA3937_RS12155	0.34	-1.0
2,761,729	-		DDA3937_RS12155	0.34	+1.9
2,761,729	-		DDA3937_RS12155	0.34	-2.0
2,761,729	-				-0.1
2,761,729	-		DDA3937_RS12155	0.34	+0.8
2,761,729	-		DDA3937_RS12155	0.34	-0.6
2,761,729	-		DDA3937_RS12155	0.34	+1.7
2,761,731	+		DDA3937_RS12155	0.34	-1.5
2,761,732	-		DDA3937_RS12155	0.34	+0.5
2,761,751	+		DDA3937_RS12155	0.35	+1.4
2,761,789	+		DDA3937_RS12155	0.38	+1.1
2,761,789	+		DDA3937_RS12155	0.38	+0.6
2,761,789	+		DDA3937_RS12155	0.38	-3.0
2,761,789	+		DDA3937_RS12155	0.38	-0.4
2,761,789	+		DDA3937_RS12155	0.38	-2.0
2,761,789	+		DDA3937_RS12155	0.38	+0.7
2,761,789	+		DDA3937_RS12155	0.38	+0.1
2,761,789	+		DDA3937_RS12155	0.38	+0.2
2,761,789	+		DDA3937_RS12155	0.38	-1.2
2,761,789	+		DDA3937_RS12155	0.38	+0.0
2,761,790	-		DDA3937_RS12155	0.38	-2.0
2,761,790	-		DDA3937_RS12155	0.38	+0.8
2,761,790	-		DDA3937_RS12155	0.38	-0.2
2,761,790	-				+0.1
2,761,790	-		DDA3937_RS12155	0.38	-0.6
2,761,790	-		DDA3937_RS12155	0.38	+1.9
2,761,790	-		DDA3937_RS12155	0.38	-1.2
2,761,790	-		DDA3937_RS12155	0.38	-1.6
2,761,791	+		DDA3937_RS12155	0.38	-1.1
2,761,791	+		DDA3937_RS12155	0.38	-3.1
2,761,791	+		DDA3937_RS12155	0.38	+1.4
2,761,791	+		DDA3937_RS12155	0.38	+1.1
2,761,791	+		DDA3937_RS12155	0.38	+0.6
2,761,792	-		DDA3937_RS12155	0.38	-1.1
2,761,792	-		DDA3937_RS12155	0.38	-2.2
2,761,792	-		DDA3937_RS12155	0.38	-0.1
2,761,792	-		DDA3937_RS12155	0.38	+0.4
2,761,845	+		DDA3937_RS12155	0.41	+2.7
2,761,845	+		DDA3937_RS12155	0.41	+0.4
2,761,846	-		DDA3937_RS12155	0.41	-0.6
2,761,878	+		DDA3937_RS12155	0.43	+1.5
2,761,879	-		DDA3937_RS12155	0.43	-0.2