Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19505

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
4,435,834	-		DDA3937_RS19500	0.30	+2.5
4,435,895	+		DDA3937_RS19500	0.36	+1.2
4,435,895	+		DDA3937_RS19500	0.36	-0.5
4,435,896	-		DDA3937_RS19500	0.36	-1.1
4,435,896	-		DDA3937_RS19500	0.36	-0.8
4,435,947	+		DDA3937_RS19500	0.40	+2.2
4,435,947	+				-1.4
4,435,947	+				-1.4
4,435,948	-		DDA3937_RS19500	0.40	-2.5
4,435,948	-		DDA3937_RS19500	0.40	+2.0
4,436,083	+		DDA3937_RS19500	0.52	-1.6
4,436,083	+		DDA3937_RS19500	0.52	+0.7
4,436,083	+		DDA3937_RS19500	0.52	+0.4
4,436,084	-		DDA3937_RS19500	0.52	+0.9
4,436,084	-		DDA3937_RS19500	0.52	+1.2
4,436,084	-				+0.9
4,436,084	-		DDA3937_RS19500	0.52	-0.8
4,436,084	-		DDA3937_RS19500	0.52	-1.1
4,436,084	-		DDA3937_RS19500	0.52	+2.2
4,436,084	-		DDA3937_RS19500	0.52	-0.5
4,436,098	+		DDA3937_RS19500	0.54	-3.7
4,436,176	+		DDA3937_RS19500	0.61	+0.2
4,436,176	+		DDA3937_RS19500	0.61	+0.1
4,436,177	-		DDA3937_RS19500	0.61	+1.5
4,436,177	-		DDA3937_RS19500	0.61	-3.5
4,436,177	-		DDA3937_RS19500	0.61	-0.1
4,436,191	+		DDA3937_RS19500	0.62	+0.6
4,436,191	+		DDA3937_RS19500	0.62	+0.9
4,436,191	+		DDA3937_RS19500	0.62	+2.9
4,436,192	-		DDA3937_RS19500	0.62	+0.5
4,436,192	-		DDA3937_RS19500	0.62	-0.8
4,436,192	-		DDA3937_RS19500	0.62	+0.6
4,436,192	-		DDA3937_RS19500	0.62	+1.2
4,436,237	+		DDA3937_RS19500	0.66	+0.7
4,436,237	+		DDA3937_RS19500	0.66	-0.5
4,436,237	+		DDA3937_RS19500	0.66	+0.0
4,436,238	-		DDA3937_RS19500	0.66	-0.2
4,436,238	-		DDA3937_RS19500	0.66	-2.0
4,436,238	-		DDA3937_RS19500	0.66	-0.9
4,436,245	+		DDA3937_RS19500	0.67	-0.5
4,436,245	+		DDA3937_RS19500	0.67	-2.9
4,436,246	-		DDA3937_RS19500	0.67	-1.3
4,436,246	-		DDA3937_RS19500	0.67	-0.0
4,436,246	-		DDA3937_RS19500	0.67	-1.5
4,436,257	+		DDA3937_RS19500	0.68	-0.5
4,436,257	+		DDA3937_RS19500	0.68	-0.8
4,436,257	+		DDA3937_RS19500	0.68	+0.2
4,436,258	-		DDA3937_RS19500	0.68	-1.2
4,436,288	+		DDA3937_RS19500	0.70	+1.5
4,436,288	+		DDA3937_RS19500	0.70	+2.0
4,436,288	+		DDA3937_RS19500	0.70	+0.9
4,436,289	-		DDA3937_RS19500	0.71	-0.6
4,436,289	-		DDA3937_RS19500	0.71	+1.0
4,436,289	-		DDA3937_RS19500	0.71	-2.1
4,436,289	-		DDA3937_RS19500	0.71	-0.1
4,436,431	+		DDA3937_RS19500	0.83	-1.2
4,436,431	+		DDA3937_RS19500	0.83	+1.3
4,436,431	+		DDA3937_RS19500	0.83	+0.1
4,436,431	+		DDA3937_RS19500	0.83	+0.0
4,436,431	+		DDA3937_RS19500	0.83	+1.6
4,436,431	+		DDA3937_RS19500	0.83	-1.3
4,436,431	+		DDA3937_RS19500	0.83	-2.0
4,436,432	-		DDA3937_RS19500	0.83	+0.9
4,436,432	-		DDA3937_RS19500	0.83	-1.4
4,436,432	-		DDA3937_RS19500	0.83	+0.4
4,436,454	+		DDA3937_RS19500	0.85	-0.1
4,436,464	+		DDA3937_RS19500	0.86	-0.5
4,436,464	+		DDA3937_RS19500	0.86	-2.2
4,436,465	-		DDA3937_RS19500	0.86	+0.7
4,436,465	-		DDA3937_RS19500	0.86	-0.3
4,436,465	-		DDA3937_RS19500	0.86	-2.2
4,436,501	-		DDA3937_RS19500	0.89	+0.6
4,436,515	+				+1.7
4,436,515	+				-2.2
4,436,515	+				+0.2
4,436,515	+				+0.0
4,436,516	-				-3.4
4,436,516	-				-1.6
4,436,521	+				+0.2
4,436,521	+				-1.8
4,436,521	+				+1.0
4,436,521	+				+1.2
4,436,521	+				+0.5
4,436,521	+				+0.3
4,436,522	-				-1.7
4,436,522	-				-1.2
4,436,522	-				-1.2
4,436,562	+				+1.1
4,436,562	+				-1.6
4,436,567	-				+0.9
4,436,614	-				+1.0
4,436,618	-				+0.6
4,436,694	-				+0.9
4,436,694	-				-0.1
4,436,695	+				-1.0
4,436,695	+				-1.6
4,436,695	+				+1.2
4,436,695	+				-1.7
4,436,696	-				-0.5
4,436,696	-				-3.4
4,436,696	-				+3.5
4,436,696	-				-0.4
4,436,731	+				-0.4
4,436,735	+				-0.4
4,436,735	+				-3.1
4,436,736	-				-1.6
4,436,736	-				+0.2
4,436,736	-				+0.9
4,436,736	-				-0.4
4,436,771	+				-3.4
4,436,786	+				-1.1
4,436,795	+				-2.9
4,436,795	+				+0.4
4,436,795	+				-2.0
4,436,795	+				+0.1
4,436,796	-				-0.8
4,436,796	-				-0.4
4,436,796	-				+1.0
4,436,796	-				+0.1
4,436,796	-				-0.1
4,436,796	-				-0.2
4,436,812	+				-2.6
4,436,812	+				+1.1
4,436,927	+		DDA3937_RS19505	0.11	+2.4
4,436,927	+		DDA3937_RS19505	0.11	-2.0
4,436,987	+		DDA3937_RS19505	0.16	-1.3
4,436,988	-		DDA3937_RS19505	0.16	-2.4
4,437,054	+		DDA3937_RS19505	0.21	-0.5
4,437,055	-		DDA3937_RS19505	0.21	+0.5
4,437,055	-		DDA3937_RS19505	0.21	-0.1
4,437,136	+		DDA3937_RS19505	0.28	-0.9
4,437,136	+		DDA3937_RS19505	0.28	-0.1
4,437,137	-		DDA3937_RS19505	0.28	-3.8
4,437,137	-		DDA3937_RS19505	0.28	-2.0
4,437,149	+		DDA3937_RS19505	0.29	+0.2
4,437,149	+		DDA3937_RS19505	0.29	+0.2
4,437,149	+		DDA3937_RS19505	0.29	+0.7
4,437,149	+		DDA3937_RS19505	0.29	-0.4
4,437,150	-		DDA3937_RS19505	0.29	-1.1
4,437,150	-		DDA3937_RS19505	0.29	-2.4
4,437,150	-		DDA3937_RS19505	0.29	+0.2
4,437,208	+		DDA3937_RS19505	0.33	-1.1
4,437,208	+		DDA3937_RS19505	0.33	-2.2
4,437,231	+		DDA3937_RS19505	0.35	+0.6
4,437,232	-		DDA3937_RS19505	0.35	-1.6
4,437,232	-		DDA3937_RS19505	0.35	+1.2
4,437,303	+		DDA3937_RS19505	0.41	-1.9
4,437,347	+		DDA3937_RS19505	0.44	+0.2
4,437,347	+		DDA3937_RS19505	0.44	-0.8
4,437,348	-		DDA3937_RS19505	0.44	+0.2
4,437,353	+		DDA3937_RS19505	0.45	-1.4
4,437,354	-		DDA3937_RS19505	0.45	+0.6
4,437,369	+		DDA3937_RS19505	0.46	-0.1
4,437,369	+		DDA3937_RS19505	0.46	-0.8
4,437,370	-		DDA3937_RS19505	0.46	-2.2
4,437,370	-		DDA3937_RS19505	0.46	-0.8
4,437,392	+		DDA3937_RS19505	0.48	+2.2
4,437,392	+		DDA3937_RS19505	0.48	-0.2
4,437,393	-		DDA3937_RS19505	0.48	-0.3
4,437,393	-		DDA3937_RS19505	0.48	-0.8
4,437,393	-		DDA3937_RS19505	0.48	-0.8
4,437,456	+		DDA3937_RS19505	0.53	-1.3
4,437,456	+		DDA3937_RS19505	0.53	-0.1
4,437,456	+		DDA3937_RS19505	0.53	+0.3
4,437,456	+		DDA3937_RS19505	0.53	-1.5
4,437,456	+		DDA3937_RS19505	0.53	-0.4
4,437,457	-		DDA3937_RS19505	0.53	-0.4
4,437,457	-		DDA3937_RS19505	0.53	+0.9
4,437,457	-		DDA3937_RS19505	0.53	-2.5
4,437,457	-		DDA3937_RS19505	0.53	+1.6
4,437,457	-		DDA3937_RS19505	0.53	-0.9
4,437,457	-		DDA3937_RS19505	0.53	-0.1
4,437,528	+		DDA3937_RS19505	0.59	-1.4
4,437,529	-		DDA3937_RS19505	0.59	+1.7
4,437,549	-		DDA3937_RS19505	0.60	-0.8
4,437,633	+		DDA3937_RS19505	0.67	+3.2
4,437,633	+		DDA3937_RS19505	0.67	-2.4
4,437,633	+		DDA3937_RS19505	0.67	-0.9
4,437,634	-		DDA3937_RS19505	0.67	-2.1
4,437,634	-		DDA3937_RS19505	0.67	-0.3
4,437,634	-		DDA3937_RS19505	0.67	-1.1
4,437,994	+				-1.1
4,437,995	-				-2.4
4,437,995	-				-2.2
4,437,995	-				+2.0
4,437,995	-				+1.8
4,438,001	+				+0.2
4,438,001	+				+2.0
4,438,001	+				-1.6
4,438,001	+				+1.1
4,438,002	-				-0.4
4,438,002	-				+1.7
4,438,002	-				-1.8
4,438,002	-				-1.6
4,438,002	-				+0.1
4,438,004	+				-2.6
4,438,004	+				+0.1
4,438,004	+				-2.0
4,438,004	+				-3.4
4,438,005	-				+1.5
4,438,005	-				+0.9
4,438,005	-				-2.7
4,438,005	-				-1.8
4,438,005	-				+1.6
4,438,005	-				-1.7
4,438,048	-				-2.6
4,438,063	+				+2.6
4,438,064	-				+0.7
4,438,093	+				-0.1
4,438,093	+				+0.3
4,438,093	+				-2.0
4,438,108	+				+2.2
4,438,108	+				-0.5
4,438,108	+				+2.0
4,438,108	+				-0.5
4,438,108	+				+2.1
4,438,108	+				-1.1
4,438,108	+				+1.7
4,438,108	+				+0.1
4,438,108	+				+1.2
4,438,108	+				-0.4
4,438,109	-				-2.7
4,438,109	-				+0.7
4,438,117	-				-1.6
4,438,130	+				-0.8
4,438,130	+				+0.2
4,438,130	+				-0.7
4,438,130	+				+0.1
4,438,130	+				-1.1
4,438,130	+				+1.1
4,438,130	+				+0.6
4,438,130	+				+1.3
4,438,130	+				+0.9
4,438,130	+				+0.3
4,438,131	-				-0.1
4,438,131	-				+2.4
4,438,131	-				-0.7
4,438,131	-				+1.2
4,438,131	-				+0.2
4,438,131	-				-4.4
4,438,131	-				-0.2
4,438,133	+				-1.9
4,438,133	+				+0.2
4,438,134	-				-1.1
4,438,134	-				-0.6
4,438,134	-				+0.2
4,438,134	-				-2.9
4,438,144	+				-1.6
4,438,151	+				-0.8
4,438,151	+				-0.9
4,438,152	-				+1.2
4,438,152	-				-2.1
4,438,152	-				-0.5
4,438,162	+				-3.2
4,438,163	-				+0.1
4,438,169	+				-1.2
4,438,169	+				+1.5
4,438,169	+				-1.1
4,438,169	+				+0.0
4,438,169	+				+0.2
4,438,170	-				-0.5
4,438,170	-				-0.4
4,438,179	+				-1.5
4,438,186	+				+0.2
4,438,187	-				+0.6
4,438,294	+				-1.6
4,438,331	+				-1.2
4,438,338	+				-2.9
4,438,389	-		DDA3937_RS19510	0.10	+0.9
4,438,712	+		DDA3937_RS19510	0.67	-2.4
4,438,730	+		DDA3937_RS19510	0.70	-1.1
4,438,730	+		DDA3937_RS19510	0.70	-0.4
4,438,731	-		DDA3937_RS19510	0.70	-1.8
4,438,877	-				-1.1
4,438,890	+				+0.7
4,438,891	-				+0.4
4,438,891	-				-1.1
4,438,891	-				-1.1
4,438,939	-				+0.1
4,438,952	-				-0.9
4,438,952	-				-0.0
4,438,952	-				+1.0
4,439,027	+				-1.6
4,439,027	+				-0.5
4,439,027	+				+2.1
4,439,028	-				-1.8
4,439,028	-				-0.8
4,439,028	-				+1.2
4,439,028	-				-0.8
4,439,039	+				+0.9
4,439,040	-				-0.0