Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02510 and DDA3937_RS02515 are separated by 104 nucleotides DDA3937_RS02515 and DDA3937_RS02520 are separated by 79 nucleotides DDA3937_RS02520 and DDA3937_RS02525 are separated by 139 nucleotides
DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438
_RS02510
DDA3937_RS02515: DDA3937_RS02515 - alkyl hydroperoxide reductase subunit C, at 556,543 to 557,106
_RS02515
DDA3937_RS02520: DDA3937_RS02520 - alkyl hydroperoxide reductase subunit F, at 557,186 to 558,748
_RS02520
DDA3937_RS02525: DDA3937_RS02525 - DUF1868 domain-containing protein, at 558,888 to 559,718
_RS02525
Position (kb) 557
558
559 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 556.436 kb on + strand at 556.437 kb on - strand at 556.441 kb on - strand at 556.441 kb on - strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.481 kb on - strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.557 kb on + strand at 556.561 kb on - strand at 556.671 kb on + strand, within DDA3937_RS02515 at 556.712 kb on - strand, within DDA3937_RS02515 at 556.715 kb on - strand, within DDA3937_RS02515 at 556.739 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.774 kb on - strand, within DDA3937_RS02515 at 556.774 kb on - strand, within DDA3937_RS02515 at 556.929 kb on + strand, within DDA3937_RS02515 at 556.929 kb on + strand, within DDA3937_RS02515 at 556.930 kb on - strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.046 kb on + strand, within DDA3937_RS02515 at 557.046 kb on + strand, within DDA3937_RS02515 at 557.067 kb on + strand at 557.067 kb on + strand at 557.067 kb on + strand at 557.068 kb on - strand at 557.068 kb on - strand at 557.105 kb on - strand at 557.132 kb on - strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.197 kb on + strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.223 kb on - strand at 557.236 kb on - strand at 557.253 kb on + strand at 557.253 kb on + strand at 557.350 kb on + strand, within DDA3937_RS02520 at 557.351 kb on - strand, within DDA3937_RS02520 at 557.369 kb on - strand, within DDA3937_RS02520 at 557.369 kb on - strand, within DDA3937_RS02520 at 557.447 kb on - strand, within DDA3937_RS02520 at 557.536 kb on + strand, within DDA3937_RS02520 at 557.537 kb on - strand, within DDA3937_RS02520 at 557.555 kb on + strand, within DDA3937_RS02520 at 557.555 kb on + strand, within DDA3937_RS02520 at 557.556 kb on - strand, within DDA3937_RS02520 at 557.556 kb on - strand, within DDA3937_RS02520 at 557.558 kb on + strand, within DDA3937_RS02520 at 557.558 kb on + strand, within DDA3937_RS02520 at 557.608 kb on - strand, within DDA3937_RS02520 at 557.683 kb on + strand, within DDA3937_RS02520 at 557.684 kb on - strand, within DDA3937_RS02520 at 557.686 kb on + strand, within DDA3937_RS02520 at 557.687 kb on - strand, within DDA3937_RS02520 at 557.687 kb on - strand, within DDA3937_RS02520 at 557.707 kb on - strand, within DDA3937_RS02520 at 557.707 kb on - strand, within DDA3937_RS02520 at 557.822 kb on + strand, within DDA3937_RS02520 at 557.823 kb on - strand, within DDA3937_RS02520 at 557.872 kb on - strand, within DDA3937_RS02520 at 557.873 kb on + strand, within DDA3937_RS02520 at 557.957 kb on + strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand at 558.216 kb on - strand, within DDA3937_RS02520 at 558.216 kb on - strand, within DDA3937_RS02520 at 558.250 kb on + strand, within DDA3937_RS02520 at 558.251 kb on - strand, within DDA3937_RS02520 at 558.469 kb on + strand, within DDA3937_RS02520 at 558.470 kb on + strand, within DDA3937_RS02520 at 558.485 kb on - strand, within DDA3937_RS02520 at 558.633 kb on + strand at 558.665 kb on + strand at 558.666 kb on - strand at 558.726 kb on - strand at 558.807 kb on + strand at 558.808 kb on - strand at 558.808 kb on - strand at 558.953 kb on + strand at 558.954 kb on - strand at 558.954 kb on - strand at 558.954 kb on - strand at 558.954 kb on - strand at 559.015 kb on + strand, within DDA3937_RS02525 at 559.016 kb on - strand, within DDA3937_RS02525 at 559.016 kb on - strand, within DDA3937_RS02525 at 559.045 kb on + strand, within DDA3937_RS02525 at 559.045 kb on + strand, within DDA3937_RS02525 at 559.046 kb on - strand, within DDA3937_RS02525 at 559.094 kb on + strand, within DDA3937_RS02525 at 559.094 kb on + strand, within DDA3937_RS02525 at 559.095 kb on - strand, within DDA3937_RS02525 at 559.108 kb on + strand, within DDA3937_RS02525 at 559.108 kb on + strand, within DDA3937_RS02525 at 559.112 kb on + strand, within DDA3937_RS02525 at 559.112 kb on + strand, within DDA3937_RS02525 at 559.113 kb on - strand, within DDA3937_RS02525 at 559.113 kb on - strand, within DDA3937_RS02525 at 559.250 kb on + strand, within DDA3937_RS02525 at 559.299 kb on - strand, within DDA3937_RS02525 at 559.299 kb on - strand, within DDA3937_RS02525 at 559.365 kb on + strand, within DDA3937_RS02525 at 559.365 kb on + strand, within DDA3937_RS02525 at 559.366 kb on - strand, within DDA3937_RS02525 at 559.411 kb on + strand, within DDA3937_RS02525 at 559.412 kb on - strand, within DDA3937_RS02525 at 559.412 kb on - strand, within DDA3937_RS02525 at 559.499 kb on + strand, within DDA3937_RS02525 at 559.523 kb on + strand, within DDA3937_RS02525 at 559.523 kb on + strand at 559.523 kb on + strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.664 kb on + strand at 559.665 kb on - strand at 559.665 kb on - strand at 559.669 kb on + strand at 559.670 kb on - strand at 559.689 kb on + strand at 559.689 kb on + strand at 559.690 kb on - strand at 559.690 kb on - strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 556,436 + -1.1 556,437 - -1.8 556,441 - -0.9 556,441 - +0.3 556,480 + +0.4 556,480 + -2.6 556,480 + -2.1 556,480 + -3.9 556,480 + -2.9 556,481 - +1.9 556,500 + -0.2 556,500 + -1.4 556,500 + +0.9 556,500 + +0.2 556,500 + +0.3 556,500 + +0.1 556,500 + +0.6 556,500 + +0.6 556,500 + +1.6 556,500 + -2.2 556,500 + -1.1 556,500 + +0.2 556,501 - -0.4 556,501 - +1.0 556,501 - +0.4 556,501 - -0.9 556,501 - +1.2 556,501 - +1.1 556,501 - -0.8 556,501 - -0.0 556,501 - +0.1 556,501 - +2.9 556,501 - -0.5 556,501 - -0.2 556,501 - +0.2 556,501 - -2.6 556,501 - -2.6 556,501 - +0.4 556,501 - -0.8 556,501 - -1.6 556,501 - +4.0 556,501 - -1.2 556,501 - -1.6 556,557 + -2.5 556,561 - -0.8 556,671 + DDA3937_RS02515 0.23 -2.9 556,712 - DDA3937_RS02515 0.30 +1.3 556,715 - DDA3937_RS02515 0.30 +1.8 556,739 + DDA3937_RS02515 0.35 +0.6 556,747 + DDA3937_RS02515 0.36 -0.8 556,747 + DDA3937_RS02515 0.36 -0.2 556,747 + DDA3937_RS02515 0.36 -2.1 556,747 + DDA3937_RS02515 0.36 +0.6 556,747 + DDA3937_RS02515 0.36 +1.6 556,747 + DDA3937_RS02515 0.36 +2.5 556,747 + DDA3937_RS02515 0.36 -1.7 556,748 - DDA3937_RS02515 0.36 -1.7 556,748 - DDA3937_RS02515 0.36 -3.2 556,748 - DDA3937_RS02515 0.36 +0.8 556,748 - DDA3937_RS02515 0.36 +0.2 556,748 - DDA3937_RS02515 0.36 -1.8 556,748 - DDA3937_RS02515 0.36 -0.1 556,748 - DDA3937_RS02515 0.36 -3.4 556,748 - DDA3937_RS02515 0.36 -1.8 556,774 - DDA3937_RS02515 0.41 +0.2 556,774 - DDA3937_RS02515 0.41 -1.6 556,929 + DDA3937_RS02515 0.68 -3.0 556,929 + DDA3937_RS02515 0.68 +0.2 556,930 - DDA3937_RS02515 0.69 -0.3 557,011 + DDA3937_RS02515 0.83 +1.3 557,011 + DDA3937_RS02515 0.83 +0.4 557,011 + DDA3937_RS02515 0.83 -0.2 557,012 - DDA3937_RS02515 0.83 +0.7 557,012 - DDA3937_RS02515 0.83 -2.4 557,012 - DDA3937_RS02515 0.83 -1.1 557,046 + DDA3937_RS02515 0.89 -2.3 557,046 + DDA3937_RS02515 0.89 -1.6 557,067 + -0.5 557,067 + -2.2 557,067 + -2.4 557,068 - -0.3 557,068 - -0.8 557,105 - -1.9 557,132 - +0.3 557,185 + -1.9 557,185 + -1.0 557,185 + -1.5 557,185 + +1.5 557,185 + +2.8 557,185 + -2.6 557,186 - -0.0 557,186 - +0.1 557,186 - -1.6 557,186 - -1.6 557,186 - +1.2 557,186 - +0.2 557,186 - +1.0 557,186 - -2.4 557,186 - -3.1 557,186 - +3.0 557,186 - +1.6 557,186 - -1.6 557,186 - -0.1 557,186 - +0.1 557,186 - +2.1 557,197 + -1.6 557,198 - -2.2 557,198 - +1.2 557,198 - -0.2 557,198 - +0.9 557,200 + -3.0 557,200 + -0.1 557,200 + -3.0 557,200 + +0.8 557,200 + +0.0 557,200 + -0.2 557,200 + +0.9 557,200 + -0.2 557,201 - -1.4 557,201 - -2.9 557,201 - -1.9 557,201 - -0.5 557,201 - -0.9 557,201 - +0.0 557,201 - -1.1 557,201 - +1.6 557,201 - -0.4 557,201 - -0.1 557,223 - +2.3 557,236 - -1.7 557,253 + +1.2 557,253 + -0.8 557,350 + DDA3937_RS02520 0.10 +0.4 557,351 - DDA3937_RS02520 0.11 +0.4 557,369 - DDA3937_RS02520 0.12 -0.8 557,369 - DDA3937_RS02520 0.12 +0.7 557,447 - DDA3937_RS02520 0.17 -0.8 557,536 + DDA3937_RS02520 0.22 +1.1 557,537 - DDA3937_RS02520 0.22 -2.2 557,555 + DDA3937_RS02520 0.24 -1.8 557,555 + DDA3937_RS02520 0.24 +0.3 557,556 - DDA3937_RS02520 0.24 +0.3 557,556 - DDA3937_RS02520 0.24 -0.9 557,558 + DDA3937_RS02520 0.24 +0.2 557,558 + DDA3937_RS02520 0.24 -1.8 557,608 - DDA3937_RS02520 0.27 +0.6 557,683 + DDA3937_RS02520 0.32 +0.8 557,684 - DDA3937_RS02520 0.32 -3.6 557,686 + DDA3937_RS02520 0.32 -1.5 557,687 - DDA3937_RS02520 0.32 -1.9 557,687 - DDA3937_RS02520 0.32 -2.4 557,707 - DDA3937_RS02520 0.33 +0.9 557,707 - DDA3937_RS02520 0.33 +1.8 557,822 + DDA3937_RS02520 0.41 -2.1 557,823 - DDA3937_RS02520 0.41 -0.3 557,872 - DDA3937_RS02520 0.44 -2.2 557,873 + DDA3937_RS02520 0.44 +0.5 557,957 + DDA3937_RS02520 0.49 +0.6 557,958 - DDA3937_RS02520 0.49 -1.2 557,958 - DDA3937_RS02520 0.49 -0.7 558,215 + DDA3937_RS02520 0.66 -1.1 558,215 + DDA3937_RS02520 0.66 +0.5 558,215 + DDA3937_RS02520 0.66 -2.3 558,215 + -1.4 558,216 - DDA3937_RS02520 0.66 +0.2 558,216 - DDA3937_RS02520 0.66 +0.9 558,250 + DDA3937_RS02520 0.68 +2.5 558,251 - DDA3937_RS02520 0.68 -1.2 558,469 + DDA3937_RS02520 0.82 +0.2 558,470 + DDA3937_RS02520 0.82 -0.7 558,485 - DDA3937_RS02520 0.83 -1.9 558,633 + -0.9 558,665 + -0.5 558,666 - +1.6 558,726 - -0.6 558,807 + +1.6 558,808 - -1.1 558,808 - -1.6 558,953 + +0.2 558,954 - +1.6 558,954 - -0.2 558,954 - -2.9 558,954 - +2.5 559,015 + DDA3937_RS02525 0.15 -1.4 559,016 - DDA3937_RS02525 0.15 -0.4 559,016 - DDA3937_RS02525 0.15 +0.8 559,045 + DDA3937_RS02525 0.19 -0.5 559,045 + DDA3937_RS02525 0.19 -2.0 559,046 - DDA3937_RS02525 0.19 -2.5 559,094 + DDA3937_RS02525 0.25 -2.2 559,094 + DDA3937_RS02525 0.25 +1.7 559,095 - DDA3937_RS02525 0.25 -0.2 559,108 + DDA3937_RS02525 0.26 +0.0 559,108 + DDA3937_RS02525 0.26 +0.1 559,112 + DDA3937_RS02525 0.27 +2.6 559,112 + DDA3937_RS02525 0.27 +0.0 559,113 - DDA3937_RS02525 0.27 -1.8 559,113 - DDA3937_RS02525 0.27 -2.3 559,250 + DDA3937_RS02525 0.44 -0.4 559,299 - DDA3937_RS02525 0.49 -1.6 559,299 - DDA3937_RS02525 0.49 +1.8 559,365 + DDA3937_RS02525 0.57 +1.8 559,365 + DDA3937_RS02525 0.57 +0.3 559,366 - DDA3937_RS02525 0.58 -2.1 559,411 + DDA3937_RS02525 0.63 -0.5 559,412 - DDA3937_RS02525 0.63 -1.6 559,412 - DDA3937_RS02525 0.63 -0.9 559,499 + DDA3937_RS02525 0.74 -1.4 559,523 + DDA3937_RS02525 0.76 -0.1 559,523 + +2.6 559,523 + DDA3937_RS02525 0.76 -0.8 559,524 - DDA3937_RS02525 0.77 -2.6 559,524 - DDA3937_RS02525 0.77 +0.8 559,524 - DDA3937_RS02525 0.77 -2.7 559,664 + +0.0 559,665 - -3.7 559,665 - -2.2 559,669 + -0.6 559,670 - -2.8 559,689 + -0.4 559,689 + +0.6 559,690 - -3.5 559,690 - +1.9 559,718 + +0.6 559,718 + -0.1 559,718 + +2.9 559,718 + -0.1 559,718 + -0.2 559,719 - -2.6 559,719 - -1.0 559,719 - +1.0 559,719 - -0.2 559,719 - +1.0 559,719 - +2.6 559,719 - -0.0 559,719 - -0.2 559,745 + -0.7 559,745 + -3.0 559,745 + +2.7 559,745 + -3.4 559,745 + +1.7 559,746 - -2.6 559,746 - +1.8 559,746 - -1.3 559,746 - -0.9 559,746 - +0.2 559,746 - -0.4 559,746 - -3.1 559,746 - -0.0 559,746 - -3.1
Or see this region's nucleotide sequence