Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12135

Experiment: Stem-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Atlantic
2,754,734	+		DDA3937_RS12125	0.67	-1.9
2,754,734	+		DDA3937_RS12125	0.67	-2.6
2,754,734	+		DDA3937_RS12125	0.67	-1.5
2,754,735	-		DDA3937_RS12125	0.67	+1.1
2,754,738	+		DDA3937_RS12125	0.67	-1.3
2,754,738	+		DDA3937_RS12125	0.67	-0.1
2,754,738	+		DDA3937_RS12125	0.67	+0.5
2,754,738	+		DDA3937_RS12125	0.67	-0.5
2,754,738	+		DDA3937_RS12125	0.67	-1.7
2,754,738	+		DDA3937_RS12125	0.67	-1.5
2,754,739	-		DDA3937_RS12125	0.68	-0.3
2,754,739	-		DDA3937_RS12125	0.68	-1.5
2,754,739	-		DDA3937_RS12125	0.68	-3.1
2,754,739	-		DDA3937_RS12125	0.68	+0.3
2,754,739	-		DDA3937_RS12125	0.68	-1.3
2,754,934	+		DDA3937_RS12125	0.85	+0.5
2,754,934	+		DDA3937_RS12125	0.85	-0.6
2,754,934	+		DDA3937_RS12125	0.85	-0.9
2,754,934	+		DDA3937_RS12125	0.85	-0.7
2,754,935	-		DDA3937_RS12125	0.86	+0.1
2,754,935	-		DDA3937_RS12125	0.86	+0.3
2,754,957	+		DDA3937_RS12125	0.88	-3.2
2,755,009	+				-2.5
2,755,010	-				-0.4
2,755,010	-				-1.6
2,755,010	-				-2.3
2,755,054	+				-0.3
2,755,054	+				+2.4
2,755,054	+				-0.5
2,755,055	-				-1.6
2,755,055	-				-3.4
2,755,055	-				-0.5
2,755,060	+				-1.9
2,755,060	+				-1.0
2,755,061	-				-1.9
2,755,061	-				+0.0
2,755,061	-				+1.2
2,755,078	-				-1.7
2,755,078	-				+0.5
2,755,078	-				-1.0
2,755,103	+				+0.7
2,755,104	-				-3.5
2,755,123	+				-1.5
2,755,123	+				+1.1
2,755,124	-				+0.5
2,755,152	+				-3.3
2,755,153	-				+1.8
2,755,157	+		DDA3937_RS12130	0.11	+2.1
2,755,158	-		DDA3937_RS12130	0.11	+0.8
2,755,158	-		DDA3937_RS12130	0.11	-0.7
2,755,158	-		DDA3937_RS12130	0.11	-3.1
2,755,158	-		DDA3937_RS12130	0.11	+0.5
2,755,203	-		DDA3937_RS12130	0.20	-1.5
2,755,260	-		DDA3937_RS12130	0.32	-1.3
2,755,289	+		DDA3937_RS12130	0.37	-0.8
2,755,289	+		DDA3937_RS12130	0.37	+0.7
2,755,289	+		DDA3937_RS12130	0.37	-0.9
2,755,289	+		DDA3937_RS12130	0.37	+0.3
2,755,289	+		DDA3937_RS12130	0.37	+0.4
2,755,290	-		DDA3937_RS12130	0.38	-2.3
2,755,290	-		DDA3937_RS12130	0.38	-2.5
2,755,373	+		DDA3937_RS12130	0.54	+4.0
2,755,374	-		DDA3937_RS12130	0.55	-0.9
2,755,377	+		DDA3937_RS12130	0.55	-0.3
2,755,377	+		DDA3937_RS12130	0.55	-1.9
2,755,377	+		DDA3937_RS12130	0.55	+1.4
2,755,377	+		DDA3937_RS12130	0.55	-0.9
2,755,378	-		DDA3937_RS12130	0.55	-0.8
2,755,378	-		DDA3937_RS12130	0.55	+0.3
2,755,378	-		DDA3937_RS12130	0.55	+1.1
2,755,386	+		DDA3937_RS12130	0.57	+1.4
2,755,386	+		DDA3937_RS12130	0.57	+1.9
2,755,386	+		DDA3937_RS12130	0.57	+1.3
2,755,387	-		DDA3937_RS12130	0.57	+2.1
2,755,387	-		DDA3937_RS12130	0.57	-0.8
2,755,387	-		DDA3937_RS12130	0.57	+1.5
2,755,387	-		DDA3937_RS12130	0.57	-0.3
2,755,409	+		DDA3937_RS12130	0.62	+0.7
2,755,409	+		DDA3937_RS12130	0.62	-1.9
2,755,409	+		DDA3937_RS12130	0.62	-2.4
2,755,409	+		DDA3937_RS12130	0.62	-0.5
2,755,409	+		DDA3937_RS12130	0.62	-0.7
2,755,410	-		DDA3937_RS12130	0.62	-2.0
2,755,533	+		DDA3937_RS12130	0.87	-1.5
2,755,533	+		DDA3937_RS12130	0.87	+0.1
2,755,533	+		DDA3937_RS12130	0.87	+2.1
2,755,534	-		DDA3937_RS12130	0.87	-1.2
2,755,644	-				-0.9
2,755,644	-				+0.1
2,755,708	+				+1.9
2,755,708	+				-1.6
2,755,722	+		DDA3937_RS12135	0.11	-0.5
2,755,722	+		DDA3937_RS12135	0.11	+2.8
2,755,924	+		DDA3937_RS12135	0.28	+1.8
2,755,925	-		DDA3937_RS12135	0.28	-1.4
2,755,925	-		DDA3937_RS12135	0.28	+0.4
2,755,971	-				-2.1
2,755,971	-		DDA3937_RS12135	0.32	-1.3
2,756,083	+		DDA3937_RS12135	0.41	-1.5
2,756,126	+		DDA3937_RS12135	0.45	-0.3
2,756,127	-		DDA3937_RS12135	0.45	+1.7
2,756,134	+		DDA3937_RS12135	0.46	-0.4
2,756,134	+		DDA3937_RS12135	0.46	+1.8
2,756,135	-		DDA3937_RS12135	0.46	-0.2
2,756,135	-		DDA3937_RS12135	0.46	+1.6
2,756,135	-		DDA3937_RS12135	0.46	-1.5
2,756,216	+		DDA3937_RS12135	0.53	-2.5
2,756,217	-		DDA3937_RS12135	0.53	+1.8
2,756,217	-		DDA3937_RS12135	0.53	+0.8
2,756,217	-		DDA3937_RS12135	0.53	-1.9
2,756,254	+		DDA3937_RS12135	0.56	-0.6
2,756,254	+		DDA3937_RS12135	0.56	-0.4
2,756,255	-		DDA3937_RS12135	0.56	+1.5
2,756,255	-		DDA3937_RS12135	0.56	+0.5
2,756,255	-		DDA3937_RS12135	0.56	-1.1
2,756,278	+		DDA3937_RS12135	0.58	-2.5
2,756,279	-		DDA3937_RS12135	0.58	-0.4
2,756,326	+				-0.1
2,756,327	-		DDA3937_RS12135	0.62	-0.5
2,756,371	-		DDA3937_RS12135	0.66	-1.0
2,756,429	+		DDA3937_RS12135	0.71	-0.9
2,756,429	+				+4.9
2,756,429	+		DDA3937_RS12135	0.71	+0.7
2,756,429	+		DDA3937_RS12135	0.71	-0.1
2,756,429	+		DDA3937_RS12135	0.71	-1.7
2,756,430	-		DDA3937_RS12135	0.71	+0.3
2,756,464	-		DDA3937_RS12135	0.74	+1.1
2,756,464	-		DDA3937_RS12135	0.74	-0.7
2,756,464	-		DDA3937_RS12135	0.74	-1.0
2,756,474	+		DDA3937_RS12135	0.75	+0.5
2,756,474	+		DDA3937_RS12135	0.75	-0.5
2,756,474	+		DDA3937_RS12135	0.75	-0.1
2,756,475	-		DDA3937_RS12135	0.75	+1.5
2,756,475	-		DDA3937_RS12135	0.75	-0.7
2,756,605	+		DDA3937_RS12135	0.86	+1.3
2,756,622	+		DDA3937_RS12135	0.87	+1.1
2,756,622	+		DDA3937_RS12135	0.87	+0.1
2,756,622	+		DDA3937_RS12135	0.87	+1.8
2,756,623	-		DDA3937_RS12135	0.87	-1.5
2,756,623	-		DDA3937_RS12135	0.87	-2.3
2,756,683	+				-1.6
2,756,726	+				-1.5
2,756,739	-				-1.7
2,756,739	-				-0.7
2,756,823	+				-4.4
2,756,823	+				+0.4
2,756,823	+				+1.1
2,756,823	+				-0.4
2,756,823	+				+0.2
2,756,823	+				-2.2
2,756,823	+				+1.5
2,756,823	+				+0.6
2,756,823	+				+0.1
2,756,824	-				+0.5
2,756,824	-				-2.6
2,756,824	-				-0.5
2,756,824	-				+2.6
2,756,824	-				-0.9
2,756,824	-				+0.7
2,756,824	-				+0.1
2,756,824	-				+0.8
2,756,829	+				+1.5
2,756,842	+				-1.8
2,756,855	+				+0.4
2,756,855	+				+2.9
2,756,855	+				-2.1
2,756,855	+				+1.3
2,756,855	+				+2.2
2,756,855	+				+2.5
2,756,856	-				-1.0
2,756,856	-				+2.6
2,756,856	-				-0.9
2,756,856	-				+1.4
2,756,856	-				-0.6
2,756,856	-				+1.1
2,756,856	-				-0.7
2,756,856	-				+2.9
2,756,856	-				+0.5
2,756,856	-				+2.5
2,757,059	+				-0.7
2,757,060	-				+1.2
2,757,060	-				-0.9
2,757,201	+				+2.0
2,757,202	-				-2.6
2,757,204	+				-1.3
2,757,205	-				-0.9
2,757,231	-				+0.5
2,757,233	+				+1.3
2,757,233	+				-0.8
2,757,421	+				-0.2
2,757,421	+				-2.1
2,757,422	-				-0.2
2,757,542	+				-0.5
2,757,675	-		DDA3937_RS12145	0.16	+2.7
2,757,749	+		DDA3937_RS12145	0.22	-0.8
2,757,749	+		DDA3937_RS12145	0.22	+0.6
2,757,749	+		DDA3937_RS12145	0.22	-0.7
2,757,749	+		DDA3937_RS12145	0.22	-2.7
2,757,750	-		DDA3937_RS12145	0.22	+1.4
2,757,753	+		DDA3937_RS12145	0.22	-0.5
2,757,753	+		DDA3937_RS12145	0.22	+1.1
2,757,753	+		DDA3937_RS12145	0.22	-1.5
2,757,753	+		DDA3937_RS12145	0.22	-2.1