Experiment: Stem-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04010 and DDA3937_RS04015 overlap by 1 nucleotides DDA3937_RS04015 and DDA3937_RS04020 overlap by 1 nucleotides DDA3937_RS04020 and DDA3937_RS04025 are separated by 2 nucleotides DDA3937_RS04025 and DDA3937_RS04030 overlap by 4 nucleotides
DDA3937_RS04010: DDA3937_RS04010 - conjugal transfer protein TrbE, at 894,154 to 896,604
_RS04010
DDA3937_RS04015: DDA3937_RS04015 - P-type conjugative transfer protein TrbJ, at 896,604 to 897,335
_RS04015
DDA3937_RS04020: DDA3937_RS04020 - P-type conjugative transfer protein TrbL, at 897,335 to 898,498
_RS04020
DDA3937_RS04025: DDA3937_RS04025 - conjugal transfer protein TrbF, at 898,501 to 899,205
_RS04025
DDA3937_RS04030: DDA3937_RS04030 - P-type conjugative transfer protein TrbG, at 899,202 to 900,098
_RS04030
Position (kb) 897
898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 896.353 kb on + strand, within DDA3937_RS04010 at 896.356 kb on + strand, within DDA3937_RS04010 at 896.356 kb on + strand, within DDA3937_RS04010 at 896.356 kb on + strand, within DDA3937_RS04010 at 896.356 kb on + strand, within DDA3937_RS04010 at 896.356 kb on + strand, within DDA3937_RS04010 at 896.357 kb on - strand, within DDA3937_RS04010 at 896.357 kb on - strand, within DDA3937_RS04010 at 896.357 kb on - strand, within DDA3937_RS04010 at 896.357 kb on - strand, within DDA3937_RS04010 at 896.357 kb on - strand, within DDA3937_RS04010 at 896.359 kb on + strand, within DDA3937_RS04010 at 896.360 kb on - strand at 896.360 kb on - strand at 896.456 kb on + strand at 896.456 kb on + strand at 896.457 kb on - strand at 896.553 kb on + strand at 896.671 kb on + strand at 896.671 kb on + strand at 896.688 kb on + strand, within DDA3937_RS04015 at 896.688 kb on + strand, within DDA3937_RS04015 at 896.689 kb on - strand, within DDA3937_RS04015 at 896.689 kb on - strand, within DDA3937_RS04015 at 896.699 kb on + strand, within DDA3937_RS04015 at 896.699 kb on + strand, within DDA3937_RS04015 at 896.700 kb on - strand, within DDA3937_RS04015 at 896.700 kb on - strand, within DDA3937_RS04015 at 896.779 kb on - strand, within DDA3937_RS04015 at 896.798 kb on + strand, within DDA3937_RS04015 at 896.799 kb on - strand, within DDA3937_RS04015 at 896.883 kb on + strand, within DDA3937_RS04015 at 896.884 kb on - strand, within DDA3937_RS04015 at 896.923 kb on - strand, within DDA3937_RS04015 at 896.934 kb on + strand, within DDA3937_RS04015 at 896.935 kb on - strand, within DDA3937_RS04015 at 896.935 kb on - strand, within DDA3937_RS04015 at 896.964 kb on + strand, within DDA3937_RS04015 at 896.964 kb on + strand, within DDA3937_RS04015 at 896.965 kb on - strand, within DDA3937_RS04015 at 896.965 kb on - strand, within DDA3937_RS04015 at 897.289 kb on - strand at 897.289 kb on - strand at 897.312 kb on + strand at 897.313 kb on - strand at 897.383 kb on + strand at 897.383 kb on + strand at 897.473 kb on + strand, within DDA3937_RS04020 at 897.473 kb on + strand, within DDA3937_RS04020 at 897.473 kb on + strand, within DDA3937_RS04020 at 897.474 kb on - strand, within DDA3937_RS04020 at 897.474 kb on - strand, within DDA3937_RS04020 at 897.542 kb on + strand, within DDA3937_RS04020 at 897.542 kb on + strand, within DDA3937_RS04020 at 897.542 kb on + strand, within DDA3937_RS04020 at 897.542 kb on + strand, within DDA3937_RS04020 at 897.543 kb on - strand, within DDA3937_RS04020 at 897.543 kb on - strand, within DDA3937_RS04020 at 897.543 kb on - strand, within DDA3937_RS04020 at 897.543 kb on - strand, within DDA3937_RS04020 at 897.543 kb on - strand, within DDA3937_RS04020 at 897.560 kb on + strand, within DDA3937_RS04020 at 897.560 kb on + strand, within DDA3937_RS04020 at 897.560 kb on + strand, within DDA3937_RS04020 at 897.560 kb on + strand, within DDA3937_RS04020 at 897.560 kb on + strand, within DDA3937_RS04020 at 897.560 kb on + strand, within DDA3937_RS04020 at 897.561 kb on - strand, within DDA3937_RS04020 at 897.561 kb on - strand, within DDA3937_RS04020 at 897.561 kb on - strand, within DDA3937_RS04020 at 897.561 kb on - strand, within DDA3937_RS04020 at 897.564 kb on + strand, within DDA3937_RS04020 at 897.564 kb on + strand, within DDA3937_RS04020 at 897.564 kb on + strand, within DDA3937_RS04020 at 897.564 kb on + strand, within DDA3937_RS04020 at 897.565 kb on - strand, within DDA3937_RS04020 at 897.565 kb on - strand, within DDA3937_RS04020 at 897.565 kb on - strand, within DDA3937_RS04020 at 897.565 kb on - strand, within DDA3937_RS04020 at 897.565 kb on - strand, within DDA3937_RS04020 at 897.565 kb on - strand, within DDA3937_RS04020 at 897.595 kb on - strand, within DDA3937_RS04020 at 897.597 kb on + strand, within DDA3937_RS04020 at 897.598 kb on - strand, within DDA3937_RS04020 at 897.682 kb on + strand, within DDA3937_RS04020 at 897.691 kb on + strand, within DDA3937_RS04020 at 897.693 kb on + strand, within DDA3937_RS04020 at 897.693 kb on + strand, within DDA3937_RS04020 at 897.693 kb on + strand, within DDA3937_RS04020 at 897.694 kb on - strand, within DDA3937_RS04020 at 897.694 kb on - strand, within DDA3937_RS04020 at 897.697 kb on + strand, within DDA3937_RS04020 at 897.698 kb on - strand, within DDA3937_RS04020 at 897.760 kb on + strand, within DDA3937_RS04020 at 897.760 kb on + strand, within DDA3937_RS04020 at 897.760 kb on + strand, within DDA3937_RS04020 at 897.761 kb on - strand, within DDA3937_RS04020 at 897.761 kb on - strand, within DDA3937_RS04020 at 897.761 kb on - strand, within DDA3937_RS04020 at 897.761 kb on - strand, within DDA3937_RS04020 at 897.804 kb on + strand, within DDA3937_RS04020 at 897.828 kb on + strand, within DDA3937_RS04020 at 897.829 kb on - strand, within DDA3937_RS04020 at 897.972 kb on + strand, within DDA3937_RS04020 at 897.973 kb on - strand, within DDA3937_RS04020 at 898.183 kb on - strand, within DDA3937_RS04020 at 898.183 kb on - strand, within DDA3937_RS04020 at 898.183 kb on - strand, within DDA3937_RS04020 at 898.183 kb on - strand, within DDA3937_RS04020 at 898.228 kb on + strand, within DDA3937_RS04020 at 898.229 kb on - strand, within DDA3937_RS04020 at 898.288 kb on + strand, within DDA3937_RS04020 at 898.289 kb on - strand, within DDA3937_RS04020 at 898.377 kb on + strand, within DDA3937_RS04020 at 898.377 kb on + strand, within DDA3937_RS04020 at 898.378 kb on - strand, within DDA3937_RS04020 at 898.424 kb on - strand at 898.528 kb on + strand at 898.528 kb on + strand at 898.559 kb on - strand at 898.559 kb on - strand at 898.711 kb on + strand, within DDA3937_RS04025 at 898.712 kb on - strand, within DDA3937_RS04025 at 898.712 kb on - strand, within DDA3937_RS04025 at 898.771 kb on + strand, within DDA3937_RS04025 at 898.771 kb on + strand, within DDA3937_RS04025 at 898.771 kb on + strand, within DDA3937_RS04025 at 898.772 kb on - strand, within DDA3937_RS04025 at 898.772 kb on - strand at 898.799 kb on - strand, within DDA3937_RS04025 at 898.799 kb on - strand, within DDA3937_RS04025 at 898.815 kb on + strand, within DDA3937_RS04025 at 898.815 kb on + strand, within DDA3937_RS04025 at 898.879 kb on + strand, within DDA3937_RS04025 at 898.879 kb on + strand, within DDA3937_RS04025 at 898.880 kb on - strand, within DDA3937_RS04025 at 898.885 kb on + strand, within DDA3937_RS04025 at 898.885 kb on + strand, within DDA3937_RS04025 at 898.885 kb on + strand, within DDA3937_RS04025 at 898.886 kb on - strand, within DDA3937_RS04025 at 898.886 kb on - strand, within DDA3937_RS04025 at 898.887 kb on + strand, within DDA3937_RS04025 at 898.888 kb on - strand, within DDA3937_RS04025 at 898.922 kb on - strand, within DDA3937_RS04025 at 899.147 kb on - strand at 899.149 kb on - strand at 899.217 kb on + strand at 899.218 kb on - strand at 899.218 kb on - strand at 899.218 kb on - strand at 899.218 kb on - strand at 899.220 kb on + strand at 899.222 kb on - strand at 899.235 kb on + strand at 899.236 kb on - strand at 899.236 kb on - strand at 899.327 kb on + strand, within DDA3937_RS04030 at 899.327 kb on + strand, within DDA3937_RS04030 at 899.327 kb on + strand, within DDA3937_RS04030 at 899.344 kb on + strand, within DDA3937_RS04030 at 899.344 kb on + strand, within DDA3937_RS04030 at 899.469 kb on + strand, within DDA3937_RS04030 at 899.469 kb on + strand, within DDA3937_RS04030 at 899.469 kb on + strand, within DDA3937_RS04030 at 899.470 kb on - strand, within DDA3937_RS04030 at 899.470 kb on - strand, within DDA3937_RS04030 at 899.480 kb on + strand at 899.481 kb on - strand, within DDA3937_RS04030 at 899.481 kb on - strand, within DDA3937_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Atlantic remove 896,353 + DDA3937_RS04010 0.90 -1.1 896,356 + DDA3937_RS04010 0.90 +2.2 896,356 + DDA3937_RS04010 0.90 +1.4 896,356 + DDA3937_RS04010 0.90 +0.8 896,356 + DDA3937_RS04010 0.90 -0.9 896,356 + DDA3937_RS04010 0.90 -1.4 896,357 - DDA3937_RS04010 0.90 -0.9 896,357 - DDA3937_RS04010 0.90 -1.5 896,357 - DDA3937_RS04010 0.90 -1.0 896,357 - DDA3937_RS04010 0.90 +1.7 896,357 - DDA3937_RS04010 0.90 -2.3 896,359 + DDA3937_RS04010 0.90 +0.3 896,360 - -3.6 896,360 - -1.4 896,456 + -1.8 896,456 + -1.5 896,457 - +0.7 896,553 + +0.3 896,671 + +4.0 896,671 + -1.6 896,688 + DDA3937_RS04015 0.11 -1.9 896,688 + DDA3937_RS04015 0.11 -0.4 896,689 - DDA3937_RS04015 0.12 -2.9 896,689 - DDA3937_RS04015 0.12 -1.8 896,699 + DDA3937_RS04015 0.13 +1.1 896,699 + DDA3937_RS04015 0.13 -1.5 896,700 - DDA3937_RS04015 0.13 -1.4 896,700 - DDA3937_RS04015 0.13 -0.6 896,779 - DDA3937_RS04015 0.24 -3.6 896,798 + DDA3937_RS04015 0.27 -0.0 896,799 - DDA3937_RS04015 0.27 +2.0 896,883 + DDA3937_RS04015 0.38 +0.4 896,884 - DDA3937_RS04015 0.38 +0.3 896,923 - DDA3937_RS04015 0.44 +0.1 896,934 + DDA3937_RS04015 0.45 -2.4 896,935 - DDA3937_RS04015 0.45 +0.8 896,935 - DDA3937_RS04015 0.45 +1.0 896,964 + DDA3937_RS04015 0.49 -0.5 896,964 + DDA3937_RS04015 0.49 -0.7 896,965 - DDA3937_RS04015 0.49 -3.1 896,965 - DDA3937_RS04015 0.49 +0.1 897,289 - -1.4 897,289 - -2.3 897,312 + -2.4 897,313 - -1.9 897,383 + -3.0 897,383 + +1.1 897,473 + DDA3937_RS04020 0.12 +0.5 897,473 + DDA3937_RS04020 0.12 +1.8 897,473 + DDA3937_RS04020 0.12 -0.9 897,474 - DDA3937_RS04020 0.12 +0.4 897,474 - DDA3937_RS04020 0.12 -1.6 897,542 + DDA3937_RS04020 0.18 -1.9 897,542 + DDA3937_RS04020 0.18 -0.1 897,542 + DDA3937_RS04020 0.18 +0.1 897,542 + DDA3937_RS04020 0.18 +2.4 897,543 - DDA3937_RS04020 0.18 -2.0 897,543 - DDA3937_RS04020 0.18 -2.5 897,543 - DDA3937_RS04020 0.18 +2.0 897,543 - DDA3937_RS04020 0.18 +0.4 897,543 - DDA3937_RS04020 0.18 -1.4 897,560 + DDA3937_RS04020 0.19 +0.4 897,560 + DDA3937_RS04020 0.19 -3.2 897,560 + DDA3937_RS04020 0.19 +0.9 897,560 + DDA3937_RS04020 0.19 +2.7 897,560 + DDA3937_RS04020 0.19 -1.4 897,560 + DDA3937_RS04020 0.19 +1.9 897,561 - DDA3937_RS04020 0.19 +3.1 897,561 - DDA3937_RS04020 0.19 -0.3 897,561 - DDA3937_RS04020 0.19 +0.0 897,561 - DDA3937_RS04020 0.19 -2.4 897,564 + DDA3937_RS04020 0.20 -1.2 897,564 + DDA3937_RS04020 0.20 +1.3 897,564 + DDA3937_RS04020 0.20 +2.8 897,564 + DDA3937_RS04020 0.20 -1.2 897,565 - DDA3937_RS04020 0.20 +0.1 897,565 - DDA3937_RS04020 0.20 -0.8 897,565 - DDA3937_RS04020 0.20 +0.3 897,565 - DDA3937_RS04020 0.20 -0.4 897,565 - DDA3937_RS04020 0.20 +0.3 897,565 - DDA3937_RS04020 0.20 -3.5 897,595 - DDA3937_RS04020 0.22 -1.8 897,597 + DDA3937_RS04020 0.23 +1.2 897,598 - DDA3937_RS04020 0.23 +1.4 897,682 + DDA3937_RS04020 0.30 -0.1 897,691 + DDA3937_RS04020 0.31 +2.0 897,693 + DDA3937_RS04020 0.31 -2.5 897,693 + DDA3937_RS04020 0.31 -0.2 897,693 + DDA3937_RS04020 0.31 +1.1 897,694 - DDA3937_RS04020 0.31 -0.2 897,694 - DDA3937_RS04020 0.31 -0.3 897,697 + DDA3937_RS04020 0.31 +0.7 897,698 - DDA3937_RS04020 0.31 -1.4 897,760 + DDA3937_RS04020 0.37 -2.6 897,760 + DDA3937_RS04020 0.37 +0.5 897,760 + DDA3937_RS04020 0.37 -0.6 897,761 - DDA3937_RS04020 0.37 -1.7 897,761 - DDA3937_RS04020 0.37 +1.1 897,761 - DDA3937_RS04020 0.37 -0.9 897,761 - DDA3937_RS04020 0.37 -1.2 897,804 + DDA3937_RS04020 0.40 -3.4 897,828 + DDA3937_RS04020 0.42 +3.6 897,829 - DDA3937_RS04020 0.42 -0.6 897,972 + DDA3937_RS04020 0.55 +0.5 897,973 - DDA3937_RS04020 0.55 -2.0 898,183 - DDA3937_RS04020 0.73 -2.1 898,183 - DDA3937_RS04020 0.73 -3.5 898,183 - DDA3937_RS04020 0.73 -3.4 898,183 - DDA3937_RS04020 0.73 -1.8 898,228 + DDA3937_RS04020 0.77 -0.8 898,229 - DDA3937_RS04020 0.77 -0.4 898,288 + DDA3937_RS04020 0.82 -0.4 898,289 - DDA3937_RS04020 0.82 +4.6 898,377 + DDA3937_RS04020 0.90 -0.0 898,377 + DDA3937_RS04020 0.90 +3.5 898,378 - DDA3937_RS04020 0.90 +0.7 898,424 - +1.7 898,528 + -2.6 898,528 + +1.7 898,559 - -0.4 898,559 - -2.3 898,711 + DDA3937_RS04025 0.30 -2.0 898,712 - DDA3937_RS04025 0.30 -0.7 898,712 - DDA3937_RS04025 0.30 +1.7 898,771 + DDA3937_RS04025 0.38 -2.4 898,771 + DDA3937_RS04025 0.38 +0.3 898,771 + DDA3937_RS04025 0.38 +0.4 898,772 - DDA3937_RS04025 0.38 -1.7 898,772 - -0.1 898,799 - DDA3937_RS04025 0.42 +0.4 898,799 - DDA3937_RS04025 0.42 -1.3 898,815 + DDA3937_RS04025 0.45 -0.2 898,815 + DDA3937_RS04025 0.45 -1.2 898,879 + DDA3937_RS04025 0.54 -1.4 898,879 + DDA3937_RS04025 0.54 +0.3 898,880 - DDA3937_RS04025 0.54 +2.3 898,885 + DDA3937_RS04025 0.54 -0.2 898,885 + DDA3937_RS04025 0.54 +0.7 898,885 + DDA3937_RS04025 0.54 -0.9 898,886 - DDA3937_RS04025 0.55 +0.2 898,886 - DDA3937_RS04025 0.55 -0.7 898,887 + DDA3937_RS04025 0.55 -0.9 898,888 - DDA3937_RS04025 0.55 +0.3 898,922 - DDA3937_RS04025 0.60 +1.5 899,147 - -2.3 899,149 - -0.9 899,217 + -2.1 899,218 - -2.2 899,218 - -1.5 899,218 - -2.9 899,218 - -2.0 899,220 + -0.1 899,222 - +0.6 899,235 + -3.2 899,236 - -2.2 899,236 - -0.6 899,327 + DDA3937_RS04030 0.14 -1.4 899,327 + DDA3937_RS04030 0.14 +2.5 899,327 + DDA3937_RS04030 0.14 -2.0 899,344 + DDA3937_RS04030 0.16 -0.9 899,344 + DDA3937_RS04030 0.16 +0.2 899,469 + DDA3937_RS04030 0.30 +1.9 899,469 + DDA3937_RS04030 0.30 +1.2 899,469 + DDA3937_RS04030 0.30 -0.0 899,470 - DDA3937_RS04030 0.30 +1.1 899,470 - DDA3937_RS04030 0.30 +0.7 899,480 + -0.9 899,481 - DDA3937_RS04030 0.31 -1.1 899,481 - DDA3937_RS04030 0.31 -0.5
Or see this region's nucleotide sequence