Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21910

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04065 and DDA3937_RS04070 are separated by 300 nucleotidesDDA3937_RS04070 and DDA3937_RS21910 are separated by 92 nucleotidesDDA3937_RS21910 and DDA3937_RS04080 are separated by 102 nucleotidesDDA3937_RS04080 and DDA3937_RS23025 are separated by 51 nucleotidesDDA3937_RS23025 and DDA3937_RS04085 are separated by 29 nucleotides DDA3937_RS04065: DDA3937_RS04065 - H-NS histone family protein, at 904,677 to 905,078 _RS04065 DDA3937_RS04070: DDA3937_RS04070 - helix-turn-helix transcriptional regulator, at 905,379 to 905,597 _RS04070 DDA3937_RS21910: DDA3937_RS21910 - helix-turn-helix transcriptional regulator, at 905,690 to 905,920 _RS21910 DDA3937_RS04080: DDA3937_RS04080 - helix-turn-helix domain-containing protein, at 906,023 to 906,268 _RS04080 DDA3937_RS23025: DDA3937_RS23025 - IS1 family transposase, at 906,320 to 906,547 _RS23025 DDA3937_RS04085: DDA3937_RS04085 - hypothetical protein, at 906,577 to 906,903 _RS04085 Position (kb) 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 905.392 kb on - strandat 905.538 kb on + strand, within DDA3937_RS04070at 905.589 kb on - strandat 905.657 kb on + strandat 905.657 kb on + strandat 905.657 kb on + strandat 905.658 kb on - strandat 905.658 kb on - strandat 905.708 kb on + strandat 905.752 kb on + strand, within DDA3937_RS21910at 905.752 kb on + strand, within DDA3937_RS21910at 905.753 kb on - strand, within DDA3937_RS21910at 905.753 kb on - strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.754 kb on + strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.755 kb on - strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.805 kb on + strand, within DDA3937_RS21910at 905.806 kb on - strand, within DDA3937_RS21910at 905.806 kb on - strand, within DDA3937_RS21910at 905.806 kb on - strand, within DDA3937_RS21910at 905.925 kb on + strandat 905.925 kb on + strandat 905.926 kb on - strandat 906.022 kb on + strandat 906.023 kb on - strandat 906.066 kb on + strand, within DDA3937_RS04080at 906.067 kb on - strand, within DDA3937_RS04080at 906.067 kb on - strand, within DDA3937_RS04080at 906.124 kb on + strand, within DDA3937_RS04080at 906.124 kb on + strand, within DDA3937_RS04080at 906.125 kb on - strand, within DDA3937_RS04080at 906.125 kb on - strand, within DDA3937_RS04080at 906.136 kb on + strand, within DDA3937_RS04080at 906.136 kb on + strand, within DDA3937_RS04080at 906.136 kb on + strand, within DDA3937_RS04080at 906.136 kb on + strand, within DDA3937_RS04080at 906.137 kb on - strand, within DDA3937_RS04080at 906.137 kb on - strand, within DDA3937_RS04080at 906.137 kb on - strand, within DDA3937_RS04080at 906.137 kb on - strand, within DDA3937_RS04080at 906.137 kb on - strand, within DDA3937_RS04080at 906.190 kb on + strand, within DDA3937_RS04080at 906.284 kb on + strandat 906.284 kb on + strandat 906.285 kb on - strandat 906.296 kb on + strandat 906.297 kb on - strandat 906.338 kb on - strandat 906.421 kb on + strand, within DDA3937_RS23025at 906.421 kb on + strand, within DDA3937_RS23025at 906.422 kb on - strand, within DDA3937_RS23025at 906.430 kb on + strand, within DDA3937_RS23025at 906.436 kb on + strand, within DDA3937_RS23025at 906.436 kb on + strand, within DDA3937_RS23025at 906.436 kb on + strand, within DDA3937_RS23025at 906.436 kb on + strand, within DDA3937_RS23025at 906.436 kb on + strand, within DDA3937_RS23025at 906.437 kb on - strand, within DDA3937_RS23025at 906.437 kb on - strand, within DDA3937_RS23025at 906.437 kb on - strand, within DDA3937_RS23025at 906.437 kb on - strand, within DDA3937_RS23025at 906.437 kb on - strand, within DDA3937_RS23025at 906.437 kb on - strand, within DDA3937_RS23025at 906.437 kb on - strand, within DDA3937_RS23025at 906.510 kb on + strand, within DDA3937_RS23025at 906.529 kb on + strandat 906.529 kb on + strandat 906.541 kb on + strandat 906.541 kb on + strandat 906.547 kb on + strandat 906.547 kb on + strandat 906.547 kb on + strandat 906.547 kb on + strandat 906.547 kb on + strandat 906.548 kb on - strandat 906.548 kb on - strandat 906.557 kb on + strandat 906.558 kb on - strandat 906.558 kb on - strandat 906.558 kb on - strandat 906.558 kb on - strandat 906.565 kb on + strandat 906.566 kb on - strandat 906.594 kb on + strandat 906.595 kb on - strandat 906.679 kb on - strand, within DDA3937_RS04085at 906.679 kb on - strand, within DDA3937_RS04085at 906.679 kb on - strand, within DDA3937_RS04085at 906.679 kb on - strand, within DDA3937_RS04085at 906.695 kb on + strand, within DDA3937_RS04085at 906.695 kb on + strand, within DDA3937_RS04085at 906.696 kb on - strand, within DDA3937_RS04085at 906.696 kb on - strand, within DDA3937_RS04085at 906.729 kb on + strand, within DDA3937_RS04085at 906.729 kb on + strand, within DDA3937_RS04085at 906.729 kb on + strand, within DDA3937_RS04085at 906.730 kb on - strand, within DDA3937_RS04085at 906.730 kb on - strand, within DDA3937_RS04085at 906.730 kb on - strand, within DDA3937_RS04085at 906.874 kb on - strandat 906.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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905,392 - +2.1
905,538 + DDA3937_RS04070 0.73 +0.6
905,589 - -1.5
905,657 + -0.4
905,657 + +0.2
905,657 + -1.3
905,658 - -1.2
905,658 - -1.6
905,708 + -0.2
905,752 + DDA3937_RS21910 0.27 -1.5
905,752 + DDA3937_RS21910 0.27 -1.0
905,753 - DDA3937_RS21910 0.27 +0.6
905,753 - DDA3937_RS21910 0.27 +1.2
905,754 + DDA3937_RS21910 0.28 -1.2
905,754 + DDA3937_RS21910 0.28 +0.5
905,754 + DDA3937_RS21910 0.28 +0.0
905,754 + DDA3937_RS21910 0.28 -3.0
905,754 + DDA3937_RS21910 0.28 -2.8
905,754 + DDA3937_RS21910 0.28 -0.2
905,755 - DDA3937_RS21910 0.28 +0.6
905,755 - DDA3937_RS21910 0.28 +1.1
905,755 - DDA3937_RS21910 0.28 +0.8
905,755 - DDA3937_RS21910 0.28 +2.2
905,755 - DDA3937_RS21910 0.28 -0.5
905,805 + DDA3937_RS21910 0.50 -0.4
905,805 + DDA3937_RS21910 0.50 -1.0
905,805 + DDA3937_RS21910 0.50 -2.2
905,805 + DDA3937_RS21910 0.50 +1.3
905,805 + DDA3937_RS21910 0.50 +1.7
905,806 - DDA3937_RS21910 0.50 +1.3
905,806 - DDA3937_RS21910 0.50 -1.2
905,806 - DDA3937_RS21910 0.50 -0.8
905,925 + -0.1
905,925 + -0.2
905,926 - +0.8
906,022 + +0.1
906,023 - -0.2
906,066 + DDA3937_RS04080 0.17 +1.1
906,067 - DDA3937_RS04080 0.18 +0.2
906,067 - DDA3937_RS04080 0.18 -1.0
906,124 + DDA3937_RS04080 0.41 +0.6
906,124 + DDA3937_RS04080 0.41 +0.7
906,125 - DDA3937_RS04080 0.41 +0.3
906,125 - DDA3937_RS04080 0.41 -1.4
906,136 + DDA3937_RS04080 0.46 -0.9
906,136 + DDA3937_RS04080 0.46 -1.8
906,136 + DDA3937_RS04080 0.46 +1.3
906,136 + DDA3937_RS04080 0.46 -2.8
906,137 - DDA3937_RS04080 0.46 -1.8
906,137 - DDA3937_RS04080 0.46 +0.9
906,137 - DDA3937_RS04080 0.46 -2.0
906,137 - DDA3937_RS04080 0.46 -1.0
906,137 - DDA3937_RS04080 0.46 -2.4
906,190 + DDA3937_RS04080 0.68 -0.7
906,284 + -0.7
906,284 + -1.4
906,285 - -1.1
906,296 + -0.4
906,297 - -0.4
906,338 - +0.2
906,421 + DDA3937_RS23025 0.44 +1.2
906,421 + DDA3937_RS23025 0.44 -0.9
906,422 - DDA3937_RS23025 0.45 -0.2
906,430 + DDA3937_RS23025 0.48 -0.8
906,436 + DDA3937_RS23025 0.51 +2.0
906,436 + DDA3937_RS23025 0.51 +1.3
906,436 + DDA3937_RS23025 0.51 +0.5
906,436 + DDA3937_RS23025 0.51 +1.5
906,436 + DDA3937_RS23025 0.51 -2.1
906,437 - DDA3937_RS23025 0.51 -0.7
906,437 - DDA3937_RS23025 0.51 -1.7
906,437 - DDA3937_RS23025 0.51 +0.2
906,437 - DDA3937_RS23025 0.51 +4.2
906,437 - DDA3937_RS23025 0.51 +1.0
906,437 - DDA3937_RS23025 0.51 -0.6
906,437 - DDA3937_RS23025 0.51 -0.0
906,510 + DDA3937_RS23025 0.83 -1.1
906,529 + +0.2
906,529 + -0.5
906,541 + -1.5
906,541 + +0.0
906,547 + +0.9
906,547 + +0.6
906,547 + +1.3
906,547 + -3.4
906,547 + -0.4
906,548 - -1.6
906,548 - -0.5
906,557 + +0.3
906,558 - -1.8
906,558 - -0.0
906,558 - -1.0
906,558 - -0.7
906,565 + -1.3
906,566 - +1.6
906,594 + -2.2
906,595 - -2.3
906,679 - DDA3937_RS04085 0.31 -2.0
906,679 - DDA3937_RS04085 0.31 -0.2
906,679 - DDA3937_RS04085 0.31 -1.3
906,679 - DDA3937_RS04085 0.31 +0.0
906,695 + DDA3937_RS04085 0.36 -0.7
906,695 + DDA3937_RS04085 0.36 -1.7
906,696 - DDA3937_RS04085 0.36 -0.0
906,696 - DDA3937_RS04085 0.36 -1.8
906,729 + DDA3937_RS04085 0.46 -1.9
906,729 + DDA3937_RS04085 0.46 -1.8
906,729 + DDA3937_RS04085 0.46 -0.1
906,730 - DDA3937_RS04085 0.47 -1.7
906,730 - DDA3937_RS04085 0.47 +0.7
906,730 - DDA3937_RS04085 0.47 +0.3
906,874 - -2.0
906,874 - -1.4

Or see this region's nucleotide sequence