Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17070

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,886,994	-		DDA3937_RS17065	0.79	-1.0
3,887,090	-		DDA3937_RS17065	0.85	-0.2
3,887,090	-		DDA3937_RS17065	0.85	-1.2
3,887,225	+				+0.2
3,887,226	-				-0.0
3,887,339	-				-1.5
3,887,339	-				+1.0
3,887,342	+				+0.2
3,887,343	-				-2.2
3,887,343	-				-0.2
3,887,411	+				+0.9
3,887,440	+				-1.5
3,887,440	+				-1.2
3,887,441	-				+1.9
3,887,444	+				-0.1
3,887,444	+				+0.3
3,887,445	-				-0.2
3,887,445	-				-0.1
3,887,448	+				-0.2
3,887,448	+				+1.0
3,887,448	+				+0.1
3,887,449	-				+0.5
3,887,449	-				-0.1
3,887,450	+				-1.5
3,887,450	+				-1.7
3,887,484	-				-1.8
3,887,596	-				+0.7
3,887,648	-				-1.7
3,887,648	-				-1.5
3,887,652	+				+1.3
3,887,734	+				+1.8
3,887,735	-				+0.1
3,887,788	+				-1.1
3,887,789	-				+1.3
3,887,789	-				-1.0
3,887,807	+				-2.3
3,887,846	+				-1.1
3,887,888	+				-4.5
3,887,890	+				-2.5
3,887,890	+				-0.4
3,887,891	-				+0.5
3,887,891	-				+2.6
3,887,891	-				-2.7
3,887,893	+				+0.4
3,887,894	-				+0.3
3,887,937	+				+1.0
3,887,937	+				+1.6
3,887,941	-				+0.7
3,887,941	-				-1.3
3,887,953	+				-1.2
3,887,953	+				-2.1
3,887,953	+				-1.5
3,887,953	+				+1.7
3,887,953	+				+0.9
3,887,954	-				-0.7
3,887,973	+				-0.5
3,887,973	+				-1.8
3,887,973	+				-0.6
3,887,973	+				-1.6
3,887,973	+				+0.6
3,887,978	+				+0.6
3,887,978	+				+2.0
3,887,979	-				-2.8
3,887,979	-				+2.1
3,887,997	+				+1.9
3,887,997	+				-0.7
3,888,081	+		DDA3937_RS17070	0.10	-2.6
3,888,082	-		DDA3937_RS17070	0.11	-1.0
3,888,130	+		DDA3937_RS17070	0.14	-1.0
3,888,130	+		DDA3937_RS17070	0.14	-0.5
3,888,130	+		DDA3937_RS17070	0.14	-0.7
3,888,197	-		DDA3937_RS17070	0.18	-0.5
3,888,226	+		DDA3937_RS17070	0.20	-1.1
3,888,234	+		DDA3937_RS17070	0.20	+1.0
3,888,234	+		DDA3937_RS17070	0.20	-0.3
3,888,235	-		DDA3937_RS17070	0.21	-2.4
3,888,235	-		DDA3937_RS17070	0.21	-1.0
3,888,252	+		DDA3937_RS17070	0.22	+0.3
3,888,252	+		DDA3937_RS17070	0.22	-0.1
3,888,252	+		DDA3937_RS17070	0.22	-0.2
3,888,253	-		DDA3937_RS17070	0.22	-1.1
3,888,268	-		DDA3937_RS17070	0.23	+1.8
3,888,307	+		DDA3937_RS17070	0.25	-0.2
3,888,308	-		DDA3937_RS17070	0.25	+0.0
3,888,308	-		DDA3937_RS17070	0.25	-2.0
3,888,317	+		DDA3937_RS17070	0.26	+0.1
3,888,318	-		DDA3937_RS17070	0.26	-1.7
3,888,324	+		DDA3937_RS17070	0.26	-0.8
3,888,324	+		DDA3937_RS17070	0.26	+0.5
3,888,325	-		DDA3937_RS17070	0.26	+1.5
3,888,325	-		DDA3937_RS17070	0.26	-0.5
3,888,352	-		DDA3937_RS17070	0.28	-0.7
3,888,414	-		DDA3937_RS17070	0.32	-0.2
3,888,474	-		DDA3937_RS17070	0.36	+0.7
3,888,512	+		DDA3937_RS17070	0.39	-0.7
3,888,513	-		DDA3937_RS17070	0.39	+0.1
3,888,513	-		DDA3937_RS17070	0.39	+0.2
3,888,515	+		DDA3937_RS17070	0.39	-0.5
3,888,515	+		DDA3937_RS17070	0.39	-2.4
3,888,515	+		DDA3937_RS17070	0.39	+0.3
3,888,516	-		DDA3937_RS17070	0.39	-0.8
3,888,516	-		DDA3937_RS17070	0.39	-1.2
3,888,516	-		DDA3937_RS17070	0.39	-3.3
3,888,524	+		DDA3937_RS17070	0.39	-2.9
3,888,837	+		DDA3937_RS17070	0.60	-0.8
3,888,837	+		DDA3937_RS17070	0.60	-4.2
3,888,915	+		DDA3937_RS17070	0.65	-0.2
3,889,053	-		DDA3937_RS17070	0.74	+0.2
3,889,109	+		DDA3937_RS17070	0.77	-0.7
3,889,109	+		DDA3937_RS17070	0.77	+0.3
3,889,109	+		DDA3937_RS17070	0.77	-1.4
3,889,110	-		DDA3937_RS17070	0.77	+0.6
3,889,110	-		DDA3937_RS17070	0.77	-2.2
3,889,110	-		DDA3937_RS17070	0.77	+0.8
3,889,110	-		DDA3937_RS17070	0.77	-1.0
3,889,113	+		DDA3937_RS17070	0.78	+0.0
3,889,114	-		DDA3937_RS17070	0.78	-1.1
3,889,114	-		DDA3937_RS17070	0.78	-1.5
3,889,224	+		DDA3937_RS17070	0.85	-0.1
3,889,225	-		DDA3937_RS17070	0.85	+0.0
3,889,225	-		DDA3937_RS17070	0.85	+3.1
3,889,320	+				+0.6
3,889,437	+				+0.3
3,889,437	+				-2.2
3,889,453	+				-0.2
3,889,482	-				+0.2
3,889,504	+				-0.1
3,889,508	+				+2.5
3,889,508	+				-1.8
3,889,509	-				+0.5
3,889,529	+				+0.8
3,889,529	+				-0.7
3,889,530	-				-0.6
3,889,530	-				+1.4
3,889,530	-				+2.4
3,889,540	-				+2.0
3,889,540	-				-2.0
3,889,569	+				-1.0
3,889,569	+				+2.3
3,889,570	-				+2.4
3,889,570	-				+1.9
3,889,600	+				-2.1
3,889,600	+				+0.3
3,889,600	+				+1.2
3,889,601	-				-1.8
3,889,601	-				-0.1
3,889,601	-				-0.1
3,889,601	-				+1.4
3,889,601	-				-0.4
3,889,601	-				+1.4
3,889,601	-				-0.6
3,889,614	+				-1.9
3,889,614	+				-0.3
3,889,614	+				-0.2
3,889,614	+				-1.0
3,889,614	+				+0.9
3,889,614	+				-1.6
3,889,614	+				+0.2
3,889,614	+				+1.6
3,889,614	+				-0.6
3,889,614	+				-2.0
3,889,614	+				+0.1
3,889,614	+				+0.2
3,889,615	-				-0.5
3,889,615	-				-2.1
3,889,615	-				-2.1
3,889,615	-				-0.0
3,889,615	-				-1.1
3,889,615	-				-1.0
3,889,615	-				-1.1
3,889,615	-				-2.6
3,889,629	+				+3.4
3,889,780	-		DDA3937_RS17075	0.50	-1.0
3,889,939	+				-1.6
3,889,939	+				-0.8
3,889,939	+				-1.2
3,889,939	+				-2.5
3,889,939	+				-0.4
3,889,939	+				+1.5
3,889,939	+				-3.0
3,889,939	+				-0.6
3,889,939	+				+1.1
3,889,940	-				-0.4
3,889,940	-				-1.1
3,889,940	-				+0.5
3,889,970	+				-0.7
3,889,971	-				+3.5
3,890,032	+				+0.7
3,890,033	-				-0.6
3,890,046	-				+1.6
3,890,092	+				-1.4
3,890,092	+				-1.4
3,890,092	+				-1.4
3,890,092	+				-3.0
3,890,092	+				+0.0
3,890,092	+				+0.6
3,890,093	-				+0.9
3,890,093	-				-2.0
3,890,093	-				-0.3
3,890,093	-				+0.4
3,890,096	+				+2.1
3,890,096	+				-1.2
3,890,096	+				-0.6
3,890,096	+				-0.7
3,890,096	+				+0.1
3,890,096	+				+0.4
3,890,097	-				+1.0
3,890,097	-				-0.5
3,890,097	-				-1.0
3,890,097	-				+0.3
3,890,097	-				+1.4
3,890,101	+				+2.1
3,890,101	+				+0.5
3,890,102	-				+1.3
3,890,219	+		DDA3937_RS17080	0.35	+1.6
3,890,247	-		DDA3937_RS17080	0.43	-0.5
3,890,247	-		DDA3937_RS17080	0.43	+0.6
3,890,247	-		DDA3937_RS17080	0.43	+2.1
3,890,314	+		DDA3937_RS17080	0.62	+1.6
3,890,314	+		DDA3937_RS17080	0.62	+0.9
3,890,314	+		DDA3937_RS17080	0.62	-1.4
3,890,314	+		DDA3937_RS17080	0.62	-2.0
3,890,314	+		DDA3937_RS17080	0.62	+0.9
3,890,315	-		DDA3937_RS17080	0.62	-1.2
3,890,315	-		DDA3937_RS17080	0.62	+2.4
3,890,315	-		DDA3937_RS17080	0.62	+1.3
3,890,435	+				+1.6
3,890,439	+				-1.0
3,890,439	+				-1.2
3,890,439	+				-1.2
3,890,439	+				+1.0
3,890,439	+				-1.0
3,890,439	+				+0.7
3,890,440	-				+1.1
3,890,440	-				+1.2
3,890,440	-				+0.9
3,890,441	+				-0.3
3,890,442	-				-0.7