Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13025

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,973,755	-		DDA3937_RS13020	0.59	-1.1
2,973,772	+		DDA3937_RS13020	0.60	-0.9
2,973,772	+		DDA3937_RS13020	0.60	-1.3
2,973,772	+		DDA3937_RS13020	0.60	-1.1
2,973,772	+		DDA3937_RS13020	0.60	+1.8
2,973,772	+		DDA3937_RS13020	0.60	-0.8
2,973,773	-		DDA3937_RS13020	0.60	+0.9
2,973,773	-		DDA3937_RS13020	0.60	-1.1
2,973,773	-		DDA3937_RS13020	0.60	-1.1
2,973,773	-		DDA3937_RS13020	0.60	-2.1
2,973,794	+		DDA3937_RS13020	0.61	-1.1
2,973,794	+		DDA3937_RS13020	0.61	+0.9
2,973,795	-		DDA3937_RS13020	0.61	-0.1
2,973,895	+		DDA3937_RS13020	0.65	-2.2
2,973,895	+		DDA3937_RS13020	0.65	+2.5
2,973,895	+		DDA3937_RS13020	0.65	-0.7
2,973,895	+		DDA3937_RS13020	0.65	+0.7
2,973,896	-		DDA3937_RS13020	0.65	+0.7
2,973,896	-		DDA3937_RS13020	0.65	-0.6
2,973,896	-		DDA3937_RS13020	0.65	-1.3
2,974,009	+		DDA3937_RS13020	0.70	+2.3
2,974,009	+		DDA3937_RS13020	0.70	-1.8
2,974,010	-		DDA3937_RS13020	0.70	+0.7
2,974,010	-		DDA3937_RS13020	0.70	-0.6
2,974,010	-		DDA3937_RS13020	0.70	-1.2
2,974,061	-		DDA3937_RS13020	0.72	-0.7
2,974,061	-		DDA3937_RS13020	0.72	+0.0
2,974,061	-		DDA3937_RS13020	0.72	-0.5
2,974,065	-		DDA3937_RS13020	0.72	-1.1
2,974,111	+		DDA3937_RS13020	0.74	-0.1
2,974,124	-		DDA3937_RS13020	0.75	+1.1
2,974,124	-		DDA3937_RS13020	0.75	-0.5
2,974,124	-		DDA3937_RS13020	0.75	+0.3
2,974,168	+		DDA3937_RS13020	0.77	+1.4
2,974,168	+		DDA3937_RS13020	0.77	+0.5
2,974,193	+				-0.7
2,974,193	+		DDA3937_RS13020	0.78	+0.9
2,974,195	+				-1.1
2,974,195	+		DDA3937_RS13020	0.78	-1.7
2,974,196	-		DDA3937_RS13020	0.78	-0.9
2,974,196	-		DDA3937_RS13020	0.78	-0.7
2,974,196	-		DDA3937_RS13020	0.78	+0.5
2,974,245	+		DDA3937_RS13020	0.80	-2.1
2,974,293	-		DDA3937_RS13020	0.82	-0.7
2,974,293	-		DDA3937_RS13020	0.82	-1.3
2,974,303	+		DDA3937_RS13020	0.82	+0.1
2,974,304	-		DDA3937_RS13020	0.82	-1.5
2,974,304	-		DDA3937_RS13020	0.82	-2.6
2,974,328	+		DDA3937_RS13020	0.83	-1.7
2,974,329	-		DDA3937_RS13020	0.83	-1.1
2,974,339	+		DDA3937_RS13020	0.84	-0.4
2,974,340	-		DDA3937_RS13020	0.84	+0.4
2,974,340	-		DDA3937_RS13020	0.84	+0.7
2,974,396	+		DDA3937_RS13020	0.86	+0.5
2,974,396	+		DDA3937_RS13020	0.86	+0.5
2,974,397	-		DDA3937_RS13020	0.86	+0.0
2,974,484	+				+1.6
2,974,485	-				+1.9
2,974,485	-				-2.4
2,974,485	-				+0.1
2,974,485	-				-0.4
2,974,485	-				-1.3
2,974,485	-				+0.4
2,974,598	+				-0.3
2,974,633	+				-2.1
2,974,633	+				+1.5
2,974,721	+				+3.6
2,974,721	+				-2.2
2,974,721	+				+0.3
2,974,722	-				-0.3
2,974,722	-				-0.8
2,974,795	+				-0.1
2,974,795	+				+1.3
2,974,796	-				+0.3
2,974,796	-				+1.4
2,974,796	-				-0.9
2,974,947	+		DDA3937_RS13025	0.15	+0.7
2,974,947	+		DDA3937_RS13025	0.15	-0.7
2,975,037	-		DDA3937_RS13025	0.22	-2.7
2,975,144	+		DDA3937_RS13025	0.30	-0.8
2,975,144	+		DDA3937_RS13025	0.30	-2.2
2,975,144	+		DDA3937_RS13025	0.30	-0.8
2,975,255	+		DDA3937_RS13025	0.39	-0.7
2,975,255	+		DDA3937_RS13025	0.39	-0.7
2,975,256	-		DDA3937_RS13025	0.39	-2.7
2,975,256	-		DDA3937_RS13025	0.39	-1.0
2,975,406	+		DDA3937_RS13025	0.51	+0.0
2,975,407	-		DDA3937_RS13025	0.51	+0.5
2,975,452	-		DDA3937_RS13025	0.54	-0.7
2,975,452	-		DDA3937_RS13025	0.54	-1.3
2,975,452	-		DDA3937_RS13025	0.54	+1.3
2,975,457	-		DDA3937_RS13025	0.54	-0.3
2,975,703	+		DDA3937_RS13025	0.73	+0.7
2,975,703	+		DDA3937_RS13025	0.73	+0.4
2,975,788	+		DDA3937_RS13025	0.80	+1.3
2,975,830	+		DDA3937_RS13025	0.83	+1.9
2,975,831	-		DDA3937_RS13025	0.83	+0.4
2,975,831	-		DDA3937_RS13025	0.83	-0.4
2,975,831	-		DDA3937_RS13025	0.83	+0.0
2,975,835	+		DDA3937_RS13025	0.84	-1.1
2,975,835	+		DDA3937_RS13025	0.84	-0.1
2,975,836	-		DDA3937_RS13025	0.84	+1.3
2,975,837	+		DDA3937_RS13025	0.84	-1.6
2,975,837	+		DDA3937_RS13025	0.84	+0.1
2,975,837	+		DDA3937_RS13025	0.84	+0.3
2,975,838	-		DDA3937_RS13025	0.84	-1.5
2,975,881	-		DDA3937_RS13025	0.87	+2.0
2,975,884	-		DDA3937_RS13025	0.87	-0.7
2,975,886	+		DDA3937_RS13025	0.87	-0.1
2,975,886	+		DDA3937_RS13025	0.87	+0.6
2,975,886	+		DDA3937_RS13025	0.87	-2.3
2,975,887	-		DDA3937_RS13025	0.88	+0.3
2,975,887	-		DDA3937_RS13025	0.88	+1.5
2,975,919	+				-1.3
2,975,942	+				+0.1
2,975,942	+				+0.3
2,975,942	+				-1.3
2,975,943	-				-0.1
2,975,943	-				-1.1
2,975,943	-				-0.1
2,975,946	+				-1.1
2,975,968	+				-2.3
2,976,034	-				-1.5
2,976,060	+				+0.3
2,976,133	-				+0.1
2,976,153	+				+1.3
2,976,223	-				-3.5
2,976,440	+				-0.7
2,976,441	-				+0.9
2,976,486	+		DDA3937_RS13030	0.13	-0.4
2,976,487	-		DDA3937_RS13030	0.13	-0.7
2,976,527	-		DDA3937_RS13030	0.16	-1.9
2,976,563	+		DDA3937_RS13030	0.20	-0.3
2,976,563	+		DDA3937_RS13030	0.20	+0.6
2,976,567	-		DDA3937_RS13030	0.20	-1.1
2,976,567	-		DDA3937_RS13030	0.20	+1.5
2,976,585	+		DDA3937_RS13030	0.22	+1.8
2,976,585	+		DDA3937_RS13030	0.22	+2.7
2,976,586	-		DDA3937_RS13030	0.22	+1.1
2,976,586	-		DDA3937_RS13030	0.22	+0.1
2,976,590	+				+0.3
2,976,590	+		DDA3937_RS13030	0.22	-2.7
2,976,590	+		DDA3937_RS13030	0.22	+0.9
2,976,590	+		DDA3937_RS13030	0.22	-1.9
2,976,590	+		DDA3937_RS13030	0.22	+0.9
2,976,590	+		DDA3937_RS13030	0.22	-0.8
2,976,591	-		DDA3937_RS13030	0.22	-0.6
2,976,591	-		DDA3937_RS13030	0.22	+0.0
2,976,605	+		DDA3937_RS13030	0.24	+1.4
2,976,605	+		DDA3937_RS13030	0.24	-0.1
2,976,606	-		DDA3937_RS13030	0.24	+0.1
2,976,745	+		DDA3937_RS13030	0.37	-0.5
2,976,746	+		DDA3937_RS13030	0.37	+1.3
2,976,747	+		DDA3937_RS13030	0.37	+0.3
2,976,747	+		DDA3937_RS13030	0.37	-0.3
2,976,747	+		DDA3937_RS13030	0.37	-0.7
2,976,747	+		DDA3937_RS13030	0.37	-1.1
2,976,747	+		DDA3937_RS13030	0.37	+1.7
2,976,747	+		DDA3937_RS13030	0.37	+1.3
2,976,747	+		DDA3937_RS13030	0.37	-1.5
2,976,747	+		DDA3937_RS13030	0.37	+1.9
2,976,747	+		DDA3937_RS13030	0.37	+0.5
2,976,748	-		DDA3937_RS13030	0.37	+1.4
2,976,748	-		DDA3937_RS13030	0.37	-1.3
2,976,748	-		DDA3937_RS13030	0.37	+0.6
2,976,748	-		DDA3937_RS13030	0.37	+2.3
2,976,749	+		DDA3937_RS13030	0.37	+0.4
2,976,749	+		DDA3937_RS13030	0.37	-0.9
2,976,750	-		DDA3937_RS13030	0.37	+1.3
2,976,750	-		DDA3937_RS13030	0.37	-0.3
2,976,870	+		DDA3937_RS13030	0.48	-0.3
2,976,871	-		DDA3937_RS13030	0.48	-0.4
2,976,871	-		DDA3937_RS13030	0.48	+1.5
2,976,908	-		DDA3937_RS13030	0.52	-0.1
2,976,924	+		DDA3937_RS13030	0.53	-1.2
2,976,925	-		DDA3937_RS13030	0.53	+0.3
2,976,963	+		DDA3937_RS13030	0.57	+2.1
2,976,964	-		DDA3937_RS13030	0.57	+0.5
2,976,987	-		DDA3937_RS13030	0.59	+0.5