Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03540 and DDA3937_RS03545 are separated by 453 nucleotides DDA3937_RS03545 and DDA3937_RS03550 are separated by 178 nucleotides DDA3937_RS03550 and DDA3937_RS03555 are separated by 101 nucleotides
DDA3937_RS03540: DDA3937_RS03540 - MFS transporter, at 778,585 to 780,111
_RS03540
DDA3937_RS03545: DDA3937_RS03545 - helix-turn-helix transcriptional regulator, at 780,565 to 780,774
_RS03545
DDA3937_RS03550: DDA3937_RS03550 - fructuronate reductase, at 780,953 to 782,449
_RS03550
DDA3937_RS03555: DDA3937_RS03555 - DHA2 family efflux MFS transporter permease subunit, at 782,551 to 784,155
_RS03555
Position (kb) 780
781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 779.953 kb on - strand, within DDA3937_RS03540 at 780.008 kb on + strand at 780.008 kb on + strand at 780.008 kb on + strand at 780.008 kb on + strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.009 kb on - strand at 780.014 kb on + strand at 780.015 kb on - strand at 780.015 kb on - strand at 780.015 kb on - strand at 780.033 kb on + strand at 780.033 kb on + strand at 780.033 kb on + strand at 780.034 kb on - strand at 780.034 kb on - strand at 780.056 kb on - strand at 780.105 kb on + strand at 780.106 kb on - strand at 780.106 kb on - strand at 780.200 kb on + strand at 780.200 kb on + strand at 780.200 kb on + strand at 780.201 kb on - strand at 780.201 kb on - strand at 780.226 kb on - strand at 780.226 kb on - strand at 780.228 kb on + strand at 780.229 kb on - strand at 780.256 kb on - strand at 780.280 kb on + strand at 780.330 kb on + strand at 780.387 kb on + strand at 780.387 kb on + strand at 780.387 kb on + strand at 780.388 kb on - strand at 780.429 kb on + strand at 780.429 kb on + strand at 780.430 kb on - strand at 780.430 kb on - strand at 780.430 kb on - strand at 780.502 kb on + strand at 780.502 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.525 kb on - strand at 780.525 kb on - strand at 780.554 kb on + strand at 780.554 kb on + strand at 780.702 kb on + strand, within DDA3937_RS03545 at 780.702 kb on + strand, within DDA3937_RS03545 at 780.702 kb on + strand, within DDA3937_RS03545 at 780.703 kb on - strand, within DDA3937_RS03545 at 780.703 kb on - strand, within DDA3937_RS03545 at 780.703 kb on - strand, within DDA3937_RS03545 at 780.716 kb on + strand, within DDA3937_RS03545 at 780.757 kb on + strand at 780.757 kb on + strand at 780.757 kb on + strand at 780.758 kb on - strand at 780.807 kb on - strand at 780.909 kb on + strand at 780.909 kb on + strand at 780.910 kb on - strand at 780.910 kb on - strand at 781.012 kb on - strand at 781.118 kb on - strand, within DDA3937_RS03550 at 781.200 kb on + strand, within DDA3937_RS03550 at 781.200 kb on + strand, within DDA3937_RS03550 at 781.364 kb on + strand, within DDA3937_RS03550 at 781.365 kb on - strand, within DDA3937_RS03550 at 781.378 kb on - strand, within DDA3937_RS03550 at 781.471 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.477 kb on + strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.478 kb on - strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.483 kb on + strand, within DDA3937_RS03550 at 781.484 kb on - strand, within DDA3937_RS03550 at 781.484 kb on - strand at 781.484 kb on - strand, within DDA3937_RS03550 at 781.492 kb on - strand, within DDA3937_RS03550 at 781.504 kb on - strand, within DDA3937_RS03550 at 781.512 kb on + strand, within DDA3937_RS03550 at 781.512 kb on + strand, within DDA3937_RS03550 at 781.513 kb on - strand, within DDA3937_RS03550 at 781.538 kb on - strand, within DDA3937_RS03550 at 781.630 kb on + strand, within DDA3937_RS03550 at 781.630 kb on + strand, within DDA3937_RS03550 at 781.631 kb on - strand, within DDA3937_RS03550 at 781.631 kb on - strand, within DDA3937_RS03550 at 781.631 kb on - strand at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.637 kb on + strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 781.638 kb on - strand, within DDA3937_RS03550 at 782.044 kb on + strand, within DDA3937_RS03550 at 782.045 kb on - strand, within DDA3937_RS03550 at 782.186 kb on - strand, within DDA3937_RS03550 at 782.336 kb on - strand at 782.449 kb on + strand at 782.449 kb on + strand at 782.449 kb on + strand at 782.449 kb on + strand at 782.449 kb on + strand at 782.449 kb on + strand at 782.449 kb on + strand at 782.450 kb on - strand at 782.450 kb on - strand at 782.450 kb on - strand at 782.450 kb on - strand at 782.630 kb on - strand at 782.717 kb on + strand, within DDA3937_RS03555 at 782.718 kb on - strand, within DDA3937_RS03555 at 782.746 kb on - strand, within DDA3937_RS03555 at 782.746 kb on - strand, within DDA3937_RS03555 at 782.748 kb on + strand, within DDA3937_RS03555 at 782.749 kb on - strand, within DDA3937_RS03555 at 782.749 kb on - strand, within DDA3937_RS03555 at 782.884 kb on - strand, within DDA3937_RS03555 at 782.887 kb on + strand, within DDA3937_RS03555 at 782.887 kb on + strand, within DDA3937_RS03555 at 782.887 kb on + strand, within DDA3937_RS03555 at 783.181 kb on + strand, within DDA3937_RS03555 at 783.181 kb on + strand, within DDA3937_RS03555 at 783.181 kb on + strand, within DDA3937_RS03555 at 783.182 kb on - strand, within DDA3937_RS03555 at 783.182 kb on - strand, within DDA3937_RS03555 at 783.182 kb on - strand, within DDA3937_RS03555 at 783.240 kb on - strand, within DDA3937_RS03555 at 783.263 kb on - strand, within DDA3937_RS03555 at 783.271 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.275 kb on + strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.276 kb on - strand, within DDA3937_RS03555 at 783.287 kb on + strand, within DDA3937_RS03555 at 783.288 kb on - strand, within DDA3937_RS03555 at 783.288 kb on - strand, within DDA3937_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 779,953 - DDA3937_RS03540 0.90 -0.5 780,008 + +0.2 780,008 + -1.6 780,008 + -0.5 780,008 + -0.6 780,009 - +0.4 780,009 - -0.1 780,009 - -0.2 780,009 - -1.4 780,009 - -0.4 780,009 - +1.5 780,009 - +0.7 780,009 - +0.1 780,014 + +0.2 780,015 - -0.8 780,015 - +0.5 780,015 - -1.0 780,033 + +0.5 780,033 + +0.2 780,033 + -1.4 780,034 - -1.2 780,034 - +0.4 780,056 - -2.5 780,105 + +0.3 780,106 - -2.4 780,106 - -0.1 780,200 + -2.0 780,200 + -2.3 780,200 + -0.6 780,201 - +0.4 780,201 - -1.1 780,226 - -0.4 780,226 - -0.6 780,228 + +1.1 780,229 - -0.2 780,256 - -0.9 780,280 + +0.1 780,330 + -1.1 780,387 + -1.9 780,387 + -0.9 780,387 + +0.7 780,388 - -0.9 780,429 + -0.6 780,429 + -0.6 780,430 - -1.8 780,430 - +0.4 780,430 - +0.2 780,502 + -0.2 780,502 + +0.7 780,524 + -2.2 780,524 + -1.8 780,524 + -0.6 780,524 + -2.9 780,524 + -1.0 780,524 + +0.2 780,524 + +2.1 780,525 - -1.5 780,525 - +0.6 780,554 + -0.9 780,554 + +0.4 780,702 + DDA3937_RS03545 0.65 -0.9 780,702 + DDA3937_RS03545 0.65 -0.8 780,702 + DDA3937_RS03545 0.65 +0.3 780,703 - DDA3937_RS03545 0.66 -1.2 780,703 - DDA3937_RS03545 0.66 -2.1 780,703 - DDA3937_RS03545 0.66 -2.9 780,716 + DDA3937_RS03545 0.72 -0.5 780,757 + -3.3 780,757 + -0.1 780,757 + +0.1 780,758 - -1.1 780,807 - -0.9 780,909 + -0.2 780,909 + +1.4 780,910 - +0.1 780,910 - -1.4 781,012 - +0.5 781,118 - DDA3937_RS03550 0.11 +0.4 781,200 + DDA3937_RS03550 0.16 +0.0 781,200 + DDA3937_RS03550 0.16 -1.8 781,364 + DDA3937_RS03550 0.27 -2.5 781,365 - DDA3937_RS03550 0.28 -0.0 781,378 - DDA3937_RS03550 0.28 -0.9 781,471 + DDA3937_RS03550 0.35 +0.6 781,477 + DDA3937_RS03550 0.35 +1.6 781,477 + DDA3937_RS03550 0.35 +1.3 781,477 + DDA3937_RS03550 0.35 -1.8 781,477 + DDA3937_RS03550 0.35 -0.6 781,478 - DDA3937_RS03550 0.35 -0.6 781,478 - DDA3937_RS03550 0.35 +0.4 781,478 - DDA3937_RS03550 0.35 -2.3 781,478 - DDA3937_RS03550 0.35 +0.9 781,483 + DDA3937_RS03550 0.35 -2.1 781,483 + DDA3937_RS03550 0.35 +0.7 781,483 + DDA3937_RS03550 0.35 -1.1 781,483 + DDA3937_RS03550 0.35 +2.0 781,483 + DDA3937_RS03550 0.35 +1.1 781,483 + DDA3937_RS03550 0.35 -0.7 781,483 + DDA3937_RS03550 0.35 +0.8 781,483 + DDA3937_RS03550 0.35 -1.7 781,484 - DDA3937_RS03550 0.35 -0.9 781,484 - -0.0 781,484 - DDA3937_RS03550 0.35 -1.9 781,492 - DDA3937_RS03550 0.36 -2.3 781,504 - DDA3937_RS03550 0.37 -0.2 781,512 + DDA3937_RS03550 0.37 +0.4 781,512 + DDA3937_RS03550 0.37 -2.0 781,513 - DDA3937_RS03550 0.37 -1.4 781,538 - DDA3937_RS03550 0.39 -1.9 781,630 + DDA3937_RS03550 0.45 +0.1 781,630 + DDA3937_RS03550 0.45 +1.9 781,631 - DDA3937_RS03550 0.45 +0.4 781,631 - DDA3937_RS03550 0.45 -0.1 781,631 - -0.9 781,637 + DDA3937_RS03550 0.46 +0.1 781,637 + DDA3937_RS03550 0.46 -3.0 781,637 + DDA3937_RS03550 0.46 -0.6 781,637 + DDA3937_RS03550 0.46 -0.2 781,637 + DDA3937_RS03550 0.46 +3.1 781,638 - DDA3937_RS03550 0.46 +1.6 781,638 - DDA3937_RS03550 0.46 +0.3 781,638 - -0.6 781,638 - DDA3937_RS03550 0.46 -0.6 781,638 - DDA3937_RS03550 0.46 -0.5 781,638 - DDA3937_RS03550 0.46 -0.3 781,638 - DDA3937_RS03550 0.46 -2.9 782,044 + DDA3937_RS03550 0.73 -1.6 782,045 - DDA3937_RS03550 0.73 +0.1 782,186 - DDA3937_RS03550 0.82 -0.4 782,336 - -1.7 782,449 + -0.7 782,449 + -1.1 782,449 + +1.3 782,449 + +0.0 782,449 + +0.6 782,449 + -0.6 782,449 + -0.4 782,450 - -0.6 782,450 - +0.3 782,450 - -0.9 782,450 - +0.3 782,630 - +2.6 782,717 + DDA3937_RS03555 0.10 +1.4 782,718 - DDA3937_RS03555 0.10 -1.4 782,746 - DDA3937_RS03555 0.12 -1.1 782,746 - DDA3937_RS03555 0.12 +1.7 782,748 + DDA3937_RS03555 0.12 -1.3 782,749 - DDA3937_RS03555 0.12 +1.7 782,749 - DDA3937_RS03555 0.12 +1.4 782,884 - DDA3937_RS03555 0.21 +0.6 782,887 + DDA3937_RS03555 0.21 -0.7 782,887 + DDA3937_RS03555 0.21 +0.2 782,887 + DDA3937_RS03555 0.21 -1.4 783,181 + DDA3937_RS03555 0.39 -1.6 783,181 + DDA3937_RS03555 0.39 -0.0 783,181 + DDA3937_RS03555 0.39 -0.9 783,182 - DDA3937_RS03555 0.39 -0.2 783,182 - DDA3937_RS03555 0.39 +0.6 783,182 - DDA3937_RS03555 0.39 +3.2 783,240 - DDA3937_RS03555 0.43 +1.4 783,263 - DDA3937_RS03555 0.44 +1.4 783,271 + DDA3937_RS03555 0.45 -2.9 783,275 + DDA3937_RS03555 0.45 +0.8 783,275 + DDA3937_RS03555 0.45 -1.3 783,275 + DDA3937_RS03555 0.45 +0.6 783,275 + DDA3937_RS03555 0.45 +0.7 783,275 + DDA3937_RS03555 0.45 -0.5 783,275 + DDA3937_RS03555 0.45 +2.0 783,276 - DDA3937_RS03555 0.45 -0.1 783,276 - DDA3937_RS03555 0.45 +0.1 783,276 - DDA3937_RS03555 0.45 +0.3 783,276 - DDA3937_RS03555 0.45 -0.9 783,287 + DDA3937_RS03555 0.46 -0.8 783,288 - DDA3937_RS03555 0.46 -0.5 783,288 - DDA3937_RS03555 0.46 -1.0
Or see this region's nucleotide sequence