Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16525

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,763,895	+		DDA3937_RS16520	0.38	-1.7
3,763,895	+		DDA3937_RS16520	0.38	+1.3
3,763,895	+		DDA3937_RS16520	0.38	-1.2
3,763,943	+		DDA3937_RS16520	0.41	+0.6
3,763,987	+		DDA3937_RS16520	0.45	+0.8
3,763,988	-		DDA3937_RS16520	0.45	-1.1
3,763,989	+		DDA3937_RS16520	0.45	+0.9
3,763,989	+		DDA3937_RS16520	0.45	-0.1
3,763,989	+		DDA3937_RS16520	0.45	+0.7
3,763,990	-		DDA3937_RS16520	0.45	-1.3
3,764,044	-		DDA3937_RS16520	0.50	-1.5
3,764,044	-		DDA3937_RS16520	0.50	-1.1
3,764,097	+		DDA3937_RS16520	0.54	+1.1
3,764,097	+		DDA3937_RS16520	0.54	-2.1
3,764,098	-		DDA3937_RS16520	0.54	-0.1
3,764,098	-				-0.5
3,764,224	+		DDA3937_RS16520	0.65	-1.0
3,764,225	-		DDA3937_RS16520	0.65	-0.1
3,764,225	-		DDA3937_RS16520	0.65	+1.9
3,764,225	-		DDA3937_RS16520	0.65	-2.1
3,764,252	-		DDA3937_RS16520	0.67	+1.4
3,764,252	-		DDA3937_RS16520	0.67	-1.7
3,764,253	+		DDA3937_RS16520	0.67	-0.1
3,764,253	+				-1.7
3,764,254	-		DDA3937_RS16520	0.67	+0.7
3,764,269	+		DDA3937_RS16520	0.68	-2.0
3,764,270	-		DDA3937_RS16520	0.68	+0.2
3,764,285	-		DDA3937_RS16520	0.70	-1.3
3,764,432	-		DDA3937_RS16520	0.82	-0.3
3,764,487	+		DDA3937_RS16520	0.86	-0.3
3,764,488	-		DDA3937_RS16520	0.86	+1.3
3,764,529	+		DDA3937_RS16520	0.90	-0.8
3,764,529	+		DDA3937_RS16520	0.90	-1.3
3,764,529	+		DDA3937_RS16520	0.90	-0.5
3,764,574	+				+0.2
3,764,574	+				+0.1
3,764,600	-				+0.5
3,764,601	+				+0.1
3,764,601	+				-0.8
3,764,631	-				+1.3
3,764,631	-				-1.0
3,764,686	-				+1.1
3,764,686	-				+1.5
3,764,695	+				-1.3
3,764,771	+				-0.4
3,764,771	+				-2.1
3,764,772	-				-2.2
3,764,772	-				-0.8
3,764,772	-				-0.8
3,764,772	-				-0.6
3,764,772	-				+0.3
3,764,772	-				-0.1
3,764,772	-				+1.6
3,764,885	+		DDA3937_RS16525	0.88	-0.8
3,764,885	+		DDA3937_RS16525	0.88	+1.2
3,764,885	+		DDA3937_RS16525	0.88	+0.1
3,764,886	-				-2.2
3,764,886	-				-1.7
3,764,886	-				+1.3
3,764,886	-				-0.6
3,764,887	+				+0.8
3,764,928	+				-1.9
3,764,928	+				-1.7
3,764,928	+				+3.0
3,764,928	+				-0.6
3,764,929	-				-1.7
3,764,929	-				+0.5
3,764,943	+				+0.9
3,764,944	-				-0.8
3,764,944	-				-3.6
3,764,944	-				+0.2
3,764,983	+				-1.8
3,764,983	+				-3.4
3,765,087	+				-1.8
3,765,087	+				-2.2
3,765,087	+				-0.8
3,765,087	+				-0.8
3,765,087	+				-0.1
3,765,087	+				-2.0
3,765,087	+				-1.7
3,765,088	-				-1.3
3,765,088	-				-2.0
3,765,088	-				-1.7
3,765,088	-				-3.7
3,765,088	-				-3.4
3,765,088	-				-2.1
3,765,088	-				-2.1
3,765,088	-				-1.8
3,765,089	+				-2.2
3,765,089	+				-2.7
3,765,090	-				-2.0
3,765,090	-				-2.0
3,765,090	-				-3.1
3,765,090	-				+1.5
3,765,090	-				-3.6
3,765,090	-				-2.8
3,765,209	+		DDA3937_RS16530	0.13	-0.8
3,765,209	+		DDA3937_RS16530	0.13	-0.5
3,765,209	+		DDA3937_RS16530	0.13	-1.5
3,765,209	+		DDA3937_RS16530	0.13	-1.6
3,765,209	+		DDA3937_RS16530	0.13	-4.3
3,765,210	-		DDA3937_RS16530	0.13	-3.1
3,765,210	-		DDA3937_RS16530	0.13	-2.8
3,765,226	+		DDA3937_RS16530	0.14	-1.3
3,765,226	+		DDA3937_RS16530	0.14	-1.3
3,765,227	-		DDA3937_RS16530	0.14	-3.8
3,765,227	-		DDA3937_RS16530	0.14	-1.7
3,765,256	+		DDA3937_RS16530	0.17	-1.7
3,765,257	-		DDA3937_RS16530	0.17	-0.5
3,765,257	-		DDA3937_RS16530	0.17	-2.8
3,765,327	+		DDA3937_RS16530	0.22	-2.4
3,765,328	-		DDA3937_RS16530	0.22	-1.5
3,765,328	-		DDA3937_RS16530	0.22	-2.4
3,765,328	-		DDA3937_RS16530	0.22	-3.6
3,765,377	+		DDA3937_RS16530	0.26	-4.0
3,765,377	+		DDA3937_RS16530	0.26	-1.2
3,765,377	+		DDA3937_RS16530	0.26	-2.3
3,765,378	-		DDA3937_RS16530	0.26	-3.7
3,765,391	+		DDA3937_RS16530	0.27	-2.7
3,765,392	-		DDA3937_RS16530	0.27	-2.1
3,765,451	+		DDA3937_RS16530	0.32	-4.9
3,765,451	+		DDA3937_RS16530	0.32	-3.2
3,765,451	+		DDA3937_RS16530	0.32	-1.8
3,765,451	+		DDA3937_RS16530	0.32	-3.2
3,765,451	+		DDA3937_RS16530	0.32	-3.3
3,765,451	+		DDA3937_RS16530	0.32	-4.2
3,765,451	+		DDA3937_RS16530	0.32	-1.0
3,765,451	+		DDA3937_RS16530	0.32	-3.1
3,765,451	+		DDA3937_RS16530	0.32	-1.1
3,765,451	+		DDA3937_RS16530	0.32	-1.1
3,765,451	+		DDA3937_RS16530	0.32	-2.0
3,765,451	+		DDA3937_RS16530	0.32	-3.0
3,765,452	-		DDA3937_RS16530	0.32	-0.5
3,765,452	-				-0.1
3,765,452	-		DDA3937_RS16530	0.32	-2.0
3,765,452	-		DDA3937_RS16530	0.32	-4.8
3,765,474	+		DDA3937_RS16530	0.34	-1.3
3,765,474	+		DDA3937_RS16530	0.34	-3.1
3,765,475	-		DDA3937_RS16530	0.34	-2.7
3,765,475	-		DDA3937_RS16530	0.34	-2.7
3,765,567	+		DDA3937_RS16530	0.41	-0.1
3,765,620	+		DDA3937_RS16530	0.46	+0.5
3,765,620	+		DDA3937_RS16530	0.46	-2.8
3,765,620	+		DDA3937_RS16530	0.46	-1.5
3,765,620	+		DDA3937_RS16530	0.46	-2.6
3,765,620	+		DDA3937_RS16530	0.46	-1.5
3,765,620	+		DDA3937_RS16530	0.46	-0.5
3,765,620	+		DDA3937_RS16530	0.46	-4.8
3,765,621	-		DDA3937_RS16530	0.46	-5.3
3,765,621	-		DDA3937_RS16530	0.46	-4.4
3,765,621	-		DDA3937_RS16530	0.46	-4.8
3,765,621	-		DDA3937_RS16530	0.46	-1.8
3,765,621	-		DDA3937_RS16530	0.46	-0.5
3,765,621	-		DDA3937_RS16530	0.46	-2.2
3,765,621	-		DDA3937_RS16530	0.46	-3.3
3,765,621	-		DDA3937_RS16530	0.46	-4.2
3,765,621	-		DDA3937_RS16530	0.46	-1.8
3,765,621	-		DDA3937_RS16530	0.46	-3.5
3,765,679	+		DDA3937_RS16530	0.50	-3.0
3,765,679	+		DDA3937_RS16530	0.50	+2.8
3,765,679	+		DDA3937_RS16530	0.50	-3.8
3,765,680	-		DDA3937_RS16530	0.50	-1.8
3,765,680	-		DDA3937_RS16530	0.50	+0.5
3,765,680	-		DDA3937_RS16530	0.50	-2.8
3,765,680	-		DDA3937_RS16530	0.50	-1.1
3,765,680	-		DDA3937_RS16530	0.50	-3.5
3,765,830	-		DDA3937_RS16530	0.62	-2.5
3,765,830	-		DDA3937_RS16530	0.62	-2.4
3,765,830	-		DDA3937_RS16530	0.62	-2.8
3,765,857	+		DDA3937_RS16530	0.64	-2.0
3,765,858	-		DDA3937_RS16530	0.65	-4.2
3,765,858	-		DDA3937_RS16530	0.65	-0.8
3,765,858	-		DDA3937_RS16530	0.65	+1.5