Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12825

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
2,919,251	-		DDA3937_RS22300	0.64	-0.2
2,919,261	+		DDA3937_RS22300	0.70	-1.6
2,919,378	+				+0.6
2,919,378	+				-2.1
2,919,379	-				-1.2
2,919,379	-				-2.3
2,919,433	+				+2.4
2,919,434	-				-0.6
2,919,434	-				-1.1
2,919,450	-				+0.4
2,919,552	+				+0.3
2,919,552	+				-0.6
2,919,553	-				-0.2
2,919,553	-				+0.0
2,919,559	+				-0.3
2,919,559	+				+0.6
2,919,559	+				-2.8
2,919,560	-				+0.6
2,919,562	-				+1.6
2,919,574	-				+0.2
2,919,579	+				+2.0
2,919,581	+				-2.6
2,919,599	+				+0.5
2,919,683	+		DDA3937_RS12820	0.12	-1.1
2,919,696	+		DDA3937_RS12820	0.15	-1.6
2,919,697	-		DDA3937_RS12820	0.15	-0.5
2,919,751	+		DDA3937_RS12820	0.24	+0.7
2,919,751	+		DDA3937_RS12820	0.24	-0.2
2,919,952	+		DDA3937_RS12820	0.60	+1.8
2,919,969	+		DDA3937_RS12820	0.63	-1.5
2,919,969	+		DDA3937_RS12820	0.63	-1.0
2,919,969	+		DDA3937_RS12820	0.63	+0.7
2,919,970	-		DDA3937_RS12820	0.63	+1.6
2,920,107	+		DDA3937_RS12820	0.87	-0.3
2,920,108	-		DDA3937_RS12820	0.88	-0.5
2,920,108	-		DDA3937_RS12820	0.88	+0.4
2,920,108	-		DDA3937_RS12820	0.88	-0.1
2,920,110	+		DDA3937_RS12820	0.88	+1.0
2,920,110	+		DDA3937_RS12820	0.88	-0.2
2,920,111	-		DDA3937_RS12820	0.88	-0.8
2,920,129	+				-1.3
2,920,129	+				+0.2
2,920,173	-				+1.4
2,920,173	-				+0.2
2,920,236	+				+0.5
2,920,236	+				+0.6
2,920,237	-				-3.6
2,920,237	-				-1.6
2,920,237	-				-0.5
2,920,237	-				-0.2
2,920,237	-				+0.0
2,920,314	+				-2.0
2,920,314	+				+0.5
2,920,314	+				-0.6
2,920,315	-				+2.7
2,920,321	-				-1.5
2,920,321	-				-3.1
2,920,321	-				-0.1
2,920,322	+				+1.4
2,920,322	+				+1.3
2,920,322	+				-0.8
2,920,322	+				-0.1
2,920,322	+				+0.7
2,920,322	+				+0.9
2,920,323	-				-1.0
2,920,323	-				-2.6
2,920,377	+		DDA3937_RS12825	0.12	-0.6
2,920,378	-		DDA3937_RS12825	0.12	-2.0
2,920,378	-		DDA3937_RS12825	0.12	+0.5
2,920,419	+		DDA3937_RS12825	0.15	-1.6
2,920,419	+		DDA3937_RS12825	0.15	-0.0
2,920,438	+		DDA3937_RS12825	0.16	-0.2
2,920,536	+		DDA3937_RS12825	0.22	+1.4
2,920,536	+		DDA3937_RS12825	0.22	-1.4
2,920,670	+		DDA3937_RS12825	0.30	-0.2
2,920,670	+		DDA3937_RS12825	0.30	+0.0
2,920,671	-		DDA3937_RS12825	0.30	+0.3
2,920,671	-		DDA3937_RS12825	0.30	+0.6
2,920,734	+		DDA3937_RS12825	0.34	-1.0
2,920,735	-		DDA3937_RS12825	0.34	+0.1
2,920,735	-		DDA3937_RS12825	0.34	+0.4
2,920,955	+		DDA3937_RS12825	0.47	+0.0
2,920,955	+		DDA3937_RS12825	0.47	-0.7
2,920,955	+		DDA3937_RS12825	0.47	-1.1
2,920,956	-		DDA3937_RS12825	0.47	-0.1
2,920,956	-		DDA3937_RS12825	0.47	+1.7
2,920,956	-		DDA3937_RS12825	0.47	-2.2
2,920,956	-		DDA3937_RS12825	0.47	-2.7
2,920,956	-		DDA3937_RS12825	0.47	+1.0
2,920,956	-		DDA3937_RS12825	0.47	+1.1
2,920,956	-		DDA3937_RS12825	0.47	-0.1
2,920,964	+		DDA3937_RS12825	0.48	-1.8
2,920,964	+		DDA3937_RS12825	0.48	-1.0
2,920,965	-		DDA3937_RS12825	0.48	-1.8
2,920,973	+		DDA3937_RS12825	0.49	+0.1
2,920,973	+		DDA3937_RS12825	0.49	-0.4
2,920,974	-		DDA3937_RS12825	0.49	+1.0
2,921,195	+		DDA3937_RS12825	0.62	-0.6
2,921,196	-		DDA3937_RS12825	0.62	-2.5
2,921,196	-		DDA3937_RS12825	0.62	-0.1
2,921,219	+		DDA3937_RS12825	0.63	-0.5
2,921,220	-		DDA3937_RS12825	0.64	+1.7
2,921,220	-				+1.4
2,921,337	+		DDA3937_RS12825	0.71	-0.8
2,921,485	+		DDA3937_RS12825	0.80	-0.1
2,921,485	+		DDA3937_RS12825	0.80	+0.4
2,921,711	+				+2.8
2,921,711	+				-1.5
2,921,712	-				+0.9
2,921,753	-				-0.9
2,921,808	+				-1.9
2,921,808	+				+2.6
2,921,809	-				-2.2
2,921,809	-				-0.7
2,921,900	+				-1.9
2,921,900	+				+0.1
2,921,900	+				-0.4
2,921,900	+				+0.5
2,921,900	+				-0.3
2,921,901	-				-0.6
2,921,981	+		DDA3937_RS12830	0.14	-0.4
2,921,982	-		DDA3937_RS12830	0.14	-2.3
2,922,039	+		DDA3937_RS12830	0.18	+1.4
2,922,039	+		DDA3937_RS12830	0.18	-0.1
2,922,039	+		DDA3937_RS12830	0.18	-0.9
2,922,040	-		DDA3937_RS12830	0.18	-1.4
2,922,040	-		DDA3937_RS12830	0.18	-1.8
2,922,040	-		DDA3937_RS12830	0.18	-1.9
2,922,136	+		DDA3937_RS12830	0.26	-0.2
2,922,136	+		DDA3937_RS12830	0.26	+0.1
2,922,136	+		DDA3937_RS12830	0.26	-0.7
2,922,136	+		DDA3937_RS12830	0.26	-0.6
2,922,137	-		DDA3937_RS12830	0.26	-1.2
2,922,137	-				-0.9
2,922,137	-		DDA3937_RS12830	0.26	-0.4
2,922,185	+		DDA3937_RS12830	0.30	-1.6
2,922,185	+		DDA3937_RS12830	0.30	-2.0
2,922,186	-		DDA3937_RS12830	0.30	+0.8
2,922,186	-		DDA3937_RS12830	0.30	-1.1
2,922,186	-		DDA3937_RS12830	0.30	+0.4
2,922,188	+		DDA3937_RS12830	0.30	+3.2
2,922,188	+		DDA3937_RS12830	0.30	+0.9
2,922,189	-		DDA3937_RS12830	0.30	+0.8
2,922,189	-		DDA3937_RS12830	0.30	-2.1
2,922,189	-		DDA3937_RS12830	0.30	+0.9
2,922,189	-		DDA3937_RS12830	0.30	+1.2
2,922,223	+		DDA3937_RS12830	0.33	-1.8
2,922,223	+		DDA3937_RS12830	0.33	+0.1
2,922,224	-		DDA3937_RS12830	0.33	+0.4
2,922,247	+		DDA3937_RS12830	0.35	+3.1
2,922,248	-		DDA3937_RS12830	0.35	-0.2
2,922,273	+		DDA3937_RS12830	0.37	+1.1
2,922,273	+		DDA3937_RS12830	0.37	+3.4
2,922,273	+		DDA3937_RS12830	0.37	-0.0
2,922,273	+		DDA3937_RS12830	0.37	+0.2
2,922,273	+		DDA3937_RS12830	0.37	+1.4
2,922,273	+		DDA3937_RS12830	0.37	-1.2
2,922,273	+		DDA3937_RS12830	0.37	+0.7
2,922,273	+		DDA3937_RS12830	0.37	-0.5
2,922,273	+		DDA3937_RS12830	0.37	-1.3
2,922,273	+		DDA3937_RS12830	0.37	-0.6
2,922,273	+		DDA3937_RS12830	0.37	+0.9
2,922,273	+		DDA3937_RS12830	0.37	+0.5
2,922,273	+		DDA3937_RS12830	0.37	-0.4
2,922,273	+		DDA3937_RS12830	0.37	+0.4
2,922,273	+		DDA3937_RS12830	0.37	-0.9
2,922,273	+		DDA3937_RS12830	0.37	+0.7
2,922,273	+		DDA3937_RS12830	0.37	-2.1
2,922,274	-		DDA3937_RS12830	0.37	+0.8
2,922,274	-		DDA3937_RS12830	0.37	-1.1
2,922,274	-		DDA3937_RS12830	0.37	+1.7
2,922,274	-		DDA3937_RS12830	0.37	-0.0
2,922,274	-		DDA3937_RS12830	0.37	-1.6
2,922,274	-		DDA3937_RS12830	0.37	+1.5
2,922,274	-		DDA3937_RS12830	0.37	-0.2
2,922,274	-		DDA3937_RS12830	0.37	-0.9
2,922,274	-		DDA3937_RS12830	0.37	-1.4
2,922,385	+		DDA3937_RS12830	0.46	+0.4
2,922,386	-		DDA3937_RS12830	0.46	-0.7
2,922,386	-		DDA3937_RS12830	0.46	+0.4
2,922,391	+		DDA3937_RS12830	0.46	-1.4
2,922,391	+		DDA3937_RS12830	0.46	+1.0
2,922,391	+		DDA3937_RS12830	0.46	+0.1
2,922,391	+		DDA3937_RS12830	0.46	+1.4
2,922,391	+		DDA3937_RS12830	0.46	-0.8
2,922,391	+		DDA3937_RS12830	0.46	-0.5
2,922,392	-		DDA3937_RS12830	0.46	+1.1
2,922,541	+		DDA3937_RS12830	0.58	-0.4
2,922,542	-		DDA3937_RS12830	0.58	-0.4
2,922,543	+		DDA3937_RS12830	0.58	-1.6
2,922,543	+		DDA3937_RS12830	0.58	+1.7
2,922,543	+		DDA3937_RS12830	0.58	+0.1
2,922,543	+		DDA3937_RS12830	0.58	-0.8
2,922,543	+		DDA3937_RS12830	0.58	-1.2
2,922,543	+		DDA3937_RS12830	0.58	-0.1
2,922,543	+		DDA3937_RS12830	0.58	-0.8
2,922,543	+		DDA3937_RS12830	0.58	+2.5
2,922,544	-		DDA3937_RS12830	0.58	+1.2
2,922,544	-		DDA3937_RS12830	0.58	+0.8
2,922,544	-		DDA3937_RS12830	0.58	+0.2
2,922,544	-		DDA3937_RS12830	0.58	-2.5
2,922,544	-		DDA3937_RS12830	0.58	-0.6
2,922,544	-		DDA3937_RS12830	0.58	+4.2
2,922,544	-		DDA3937_RS12830	0.58	-1.4
2,922,544	-		DDA3937_RS12830	0.58	+0.6
2,922,544	-		DDA3937_RS12830	0.58	+0.6
2,922,544	-		DDA3937_RS12830	0.58	-0.8
2,922,580	-		DDA3937_RS12830	0.61	+0.7
2,922,587	+		DDA3937_RS12830	0.61	-0.9
2,922,587	+		DDA3937_RS12830	0.61	+0.6
2,922,587	+		DDA3937_RS12830	0.61	-0.5
2,922,587	+		DDA3937_RS12830	0.61	-1.4
2,922,587	+		DDA3937_RS12830	0.61	+0.1
2,922,587	+		DDA3937_RS12830	0.61	+0.9
2,922,587	+		DDA3937_RS12830	0.61	+0.8
2,922,588	-		DDA3937_RS12830	0.62	-0.8
2,922,588	-		DDA3937_RS12830	0.62	-0.2
2,922,588	-		DDA3937_RS12830	0.62	-0.0
2,922,588	-		DDA3937_RS12830	0.62	+0.4
2,922,588	-		DDA3937_RS12830	0.62	-1.9
2,922,588	-		DDA3937_RS12830	0.62	+0.5
2,922,588	-		DDA3937_RS12830	0.62	-2.3
2,922,588	-				+2.0
2,922,594	-		DDA3937_RS12830	0.62	+4.3
2,922,594	-		DDA3937_RS12830	0.62	+0.9
2,922,786	+		DDA3937_RS12830	0.77	-1.6
2,922,786	+		DDA3937_RS12830	0.77	-1.9
2,922,786	+		DDA3937_RS12830	0.77	+0.7
2,922,786	+		DDA3937_RS12830	0.77	-2.5
2,922,787	-		DDA3937_RS12830	0.77	-1.3
2,922,787	-		DDA3937_RS12830	0.77	-0.9
2,922,787	-		DDA3937_RS12830	0.77	+1.0