Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04030

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04020 and DDA3937_RS04025 are separated by 2 nucleotidesDDA3937_RS04025 and DDA3937_RS04030 overlap by 4 nucleotidesDDA3937_RS04030 and DDA3937_RS04035 are separated by 2 nucleotides DDA3937_RS04020: DDA3937_RS04020 - P-type conjugative transfer protein TrbL, at 897,335 to 898,498 _RS04020 DDA3937_RS04025: DDA3937_RS04025 - conjugal transfer protein TrbF, at 898,501 to 899,205 _RS04025 DDA3937_RS04030: DDA3937_RS04030 - P-type conjugative transfer protein TrbG, at 899,202 to 900,098 _RS04030 DDA3937_RS04035: DDA3937_RS04035 - TrbI/VirB10 family protein, at 900,101 to 901,339 _RS04035 Position (kb) 899 900 901Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 898.228 kb on + strand, within DDA3937_RS04020at 898.229 kb on - strand, within DDA3937_RS04020at 898.288 kb on + strand, within DDA3937_RS04020at 898.289 kb on - strand, within DDA3937_RS04020at 898.377 kb on + strand, within DDA3937_RS04020at 898.377 kb on + strand, within DDA3937_RS04020at 898.378 kb on - strand, within DDA3937_RS04020at 898.424 kb on - strandat 898.528 kb on + strandat 898.528 kb on + strandat 898.559 kb on - strandat 898.559 kb on - strandat 898.711 kb on + strand, within DDA3937_RS04025at 898.712 kb on - strand, within DDA3937_RS04025at 898.712 kb on - strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.771 kb on + strand, within DDA3937_RS04025at 898.772 kb on - strand, within DDA3937_RS04025at 898.772 kb on - strandat 898.799 kb on - strand, within DDA3937_RS04025at 898.799 kb on - strand, within DDA3937_RS04025at 898.815 kb on + strand, within DDA3937_RS04025at 898.815 kb on + strand, within DDA3937_RS04025at 898.879 kb on + strand, within DDA3937_RS04025at 898.879 kb on + strand, within DDA3937_RS04025at 898.880 kb on - strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.885 kb on + strand, within DDA3937_RS04025at 898.886 kb on - strand, within DDA3937_RS04025at 898.886 kb on - strand, within DDA3937_RS04025at 898.887 kb on + strand, within DDA3937_RS04025at 898.888 kb on - strand, within DDA3937_RS04025at 898.922 kb on - strand, within DDA3937_RS04025at 899.147 kb on - strandat 899.149 kb on - strandat 899.217 kb on + strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.218 kb on - strandat 899.220 kb on + strandat 899.222 kb on - strandat 899.235 kb on + strandat 899.236 kb on - strandat 899.236 kb on - strandat 899.327 kb on + strand, within DDA3937_RS04030at 899.327 kb on + strand, within DDA3937_RS04030at 899.327 kb on + strand, within DDA3937_RS04030at 899.344 kb on + strand, within DDA3937_RS04030at 899.344 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.469 kb on + strand, within DDA3937_RS04030at 899.470 kb on - strand, within DDA3937_RS04030at 899.470 kb on - strand, within DDA3937_RS04030at 899.480 kb on + strandat 899.481 kb on - strand, within DDA3937_RS04030at 899.481 kb on - strand, within DDA3937_RS04030at 899.552 kb on + strand, within DDA3937_RS04030at 899.576 kb on + strand, within DDA3937_RS04030at 899.577 kb on - strand, within DDA3937_RS04030at 899.613 kb on - strand, within DDA3937_RS04030at 899.613 kb on - strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.679 kb on + strand, within DDA3937_RS04030at 899.680 kb on - strand, within DDA3937_RS04030at 899.680 kb on - strand, within DDA3937_RS04030at 899.680 kb on - strand, within DDA3937_RS04030at 899.736 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.892 kb on + strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.893 kb on - strand, within DDA3937_RS04030at 899.980 kb on - strand, within DDA3937_RS04030at 899.997 kb on + strand, within DDA3937_RS04030at 899.997 kb on + strand, within DDA3937_RS04030at 899.997 kb on + strand, within DDA3937_RS04030at 899.998 kb on - strand, within DDA3937_RS04030at 899.998 kb on - strand, within DDA3937_RS04030at 899.998 kb on - strandat 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strandat 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.000 kb on + strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.001 kb on - strand, within DDA3937_RS04030at 900.072 kb on - strandat 900.100 kb on + strandat 900.100 kb on + strandat 900.101 kb on - strandat 900.101 kb on - strandat 900.101 kb on - strandat 900.101 kb on - strandat 900.273 kb on + strand, within DDA3937_RS04035at 900.274 kb on - strand, within DDA3937_RS04035at 900.274 kb on - strand, within DDA3937_RS04035at 900.274 kb on - strand, within DDA3937_RS04035at 900.274 kb on - strand, within DDA3937_RS04035at 900.296 kb on - strand, within DDA3937_RS04035at 900.317 kb on + strand, within DDA3937_RS04035at 900.318 kb on - strand, within DDA3937_RS04035at 900.318 kb on - strand, within DDA3937_RS04035at 900.318 kb on - strand, within DDA3937_RS04035at 900.318 kb on - strand, within DDA3937_RS04035at 900.318 kb on - strand, within DDA3937_RS04035at 900.319 kb on + strand, within DDA3937_RS04035at 900.319 kb on + strand, within DDA3937_RS04035at 900.320 kb on - strand, within DDA3937_RS04035at 900.371 kb on + strand, within DDA3937_RS04035at 900.371 kb on + strand, within DDA3937_RS04035at 900.403 kb on - strand, within DDA3937_RS04035at 900.494 kb on + strand, within DDA3937_RS04035at 900.495 kb on - strand, within DDA3937_RS04035at 900.632 kb on - strand, within DDA3937_RS04035at 900.794 kb on - strand, within DDA3937_RS04035at 900.905 kb on + strand, within DDA3937_RS04035at 900.905 kb on + strand, within DDA3937_RS04035at 900.906 kb on - strand, within DDA3937_RS04035at 900.906 kb on - strand, within DDA3937_RS04035at 900.924 kb on - strand, within DDA3937_RS04035at 901.022 kb on + strand, within DDA3937_RS04035at 901.092 kb on + strand, within DDA3937_RS04035at 901.092 kb on + strand, within DDA3937_RS04035at 901.093 kb on - strandat 901.093 kb on - strand, within DDA3937_RS04035

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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898,228 + DDA3937_RS04020 0.77 -0.7
898,229 - DDA3937_RS04020 0.77 +1.2
898,288 + DDA3937_RS04020 0.82 -0.3
898,289 - DDA3937_RS04020 0.82 +1.5
898,377 + DDA3937_RS04020 0.90 -1.5
898,377 + DDA3937_RS04020 0.90 -0.8
898,378 - DDA3937_RS04020 0.90 +2.4
898,424 - -0.3
898,528 + +1.5
898,528 + -1.5
898,559 - -0.7
898,559 - +1.1
898,711 + DDA3937_RS04025 0.30 -0.9
898,712 - DDA3937_RS04025 0.30 -2.8
898,712 - DDA3937_RS04025 0.30 +0.9
898,771 + DDA3937_RS04025 0.38 +0.9
898,771 + DDA3937_RS04025 0.38 +0.6
898,771 + DDA3937_RS04025 0.38 +2.8
898,772 - DDA3937_RS04025 0.38 -1.0
898,772 - -1.9
898,799 - DDA3937_RS04025 0.42 -0.7
898,799 - DDA3937_RS04025 0.42 +0.6
898,815 + DDA3937_RS04025 0.45 -1.0
898,815 + DDA3937_RS04025 0.45 -1.8
898,879 + DDA3937_RS04025 0.54 -1.3
898,879 + DDA3937_RS04025 0.54 -1.6
898,880 - DDA3937_RS04025 0.54 -0.5
898,885 + DDA3937_RS04025 0.54 -0.1
898,885 + DDA3937_RS04025 0.54 +0.3
898,885 + DDA3937_RS04025 0.54 -1.7
898,886 - DDA3937_RS04025 0.55 -0.4
898,886 - DDA3937_RS04025 0.55 -1.8
898,887 + DDA3937_RS04025 0.55 +4.1
898,888 - DDA3937_RS04025 0.55 -0.8
898,922 - DDA3937_RS04025 0.60 -0.0
899,147 - -0.2
899,149 - +2.2
899,217 + +0.1
899,218 - -1.3
899,218 - -0.4
899,218 - +2.5
899,218 - -1.3
899,220 + -0.4
899,222 - +0.8
899,235 + +2.1
899,236 - -2.1
899,236 - +1.8
899,327 + DDA3937_RS04030 0.14 -0.0
899,327 + DDA3937_RS04030 0.14 -1.1
899,327 + DDA3937_RS04030 0.14 -0.3
899,344 + DDA3937_RS04030 0.16 +0.2
899,344 + DDA3937_RS04030 0.16 -2.4
899,469 + DDA3937_RS04030 0.30 +2.0
899,469 + DDA3937_RS04030 0.30 +0.3
899,469 + DDA3937_RS04030 0.30 +0.4
899,470 - DDA3937_RS04030 0.30 -0.4
899,470 - DDA3937_RS04030 0.30 +2.0
899,480 + +1.8
899,481 - DDA3937_RS04030 0.31 +1.6
899,481 - DDA3937_RS04030 0.31 -1.5
899,552 + DDA3937_RS04030 0.39 -0.7
899,576 + DDA3937_RS04030 0.42 -0.3
899,577 - DDA3937_RS04030 0.42 -1.8
899,613 - DDA3937_RS04030 0.46 -0.3
899,613 - DDA3937_RS04030 0.46 -1.1
899,679 + DDA3937_RS04030 0.53 -0.7
899,679 + DDA3937_RS04030 0.53 -1.1
899,679 + DDA3937_RS04030 0.53 -1.1
899,679 + DDA3937_RS04030 0.53 -1.5
899,680 - DDA3937_RS04030 0.53 +1.9
899,680 - DDA3937_RS04030 0.53 -3.5
899,680 - DDA3937_RS04030 0.53 -4.4
899,736 + DDA3937_RS04030 0.60 +0.9
899,892 + DDA3937_RS04030 0.77 -1.9
899,892 + DDA3937_RS04030 0.77 -1.1
899,892 + DDA3937_RS04030 0.77 +0.3
899,892 + DDA3937_RS04030 0.77 +3.9
899,893 - DDA3937_RS04030 0.77 +0.5
899,893 - DDA3937_RS04030 0.77 +1.8
899,893 - DDA3937_RS04030 0.77 +1.0
899,893 - DDA3937_RS04030 0.77 +2.4
899,893 - DDA3937_RS04030 0.77 -0.9
899,980 - DDA3937_RS04030 0.87 -0.7
899,997 + DDA3937_RS04030 0.89 -1.3
899,997 + DDA3937_RS04030 0.89 -1.2
899,997 + DDA3937_RS04030 0.89 -0.2
899,998 - DDA3937_RS04030 0.89 -1.5
899,998 - DDA3937_RS04030 0.89 -2.1
899,998 - +1.5
900,000 + DDA3937_RS04030 0.89 -0.5
900,000 + DDA3937_RS04030 0.89 -0.0
900,000 + DDA3937_RS04030 0.89 +0.8
900,000 + DDA3937_RS04030 0.89 -1.5
900,000 + -0.8
900,000 + DDA3937_RS04030 0.89 -1.3
900,000 + DDA3937_RS04030 0.89 -2.0
900,000 + DDA3937_RS04030 0.89 -1.1
900,001 - DDA3937_RS04030 0.89 +0.4
900,001 - DDA3937_RS04030 0.89 +1.8
900,001 - DDA3937_RS04030 0.89 +0.2
900,001 - DDA3937_RS04030 0.89 -1.9
900,001 - DDA3937_RS04030 0.89 -2.8
900,001 - DDA3937_RS04030 0.89 +0.1
900,001 - DDA3937_RS04030 0.89 +1.4
900,001 - DDA3937_RS04030 0.89 +0.8
900,001 - DDA3937_RS04030 0.89 -1.5
900,001 - DDA3937_RS04030 0.89 -0.5
900,072 - +1.2
900,100 + -0.1
900,100 + -1.3
900,101 - +1.2
900,101 - -0.8
900,101 - -1.8
900,101 - +2.3
900,273 + DDA3937_RS04035 0.14 -1.8
900,274 - DDA3937_RS04035 0.14 -0.6
900,274 - DDA3937_RS04035 0.14 +1.0
900,274 - DDA3937_RS04035 0.14 +0.9
900,274 - DDA3937_RS04035 0.14 +0.1
900,296 - DDA3937_RS04035 0.16 -0.7
900,317 + DDA3937_RS04035 0.17 -1.4
900,318 - DDA3937_RS04035 0.18 -0.1
900,318 - DDA3937_RS04035 0.18 -2.8
900,318 - DDA3937_RS04035 0.18 -0.5
900,318 - DDA3937_RS04035 0.18 -1.1
900,318 - DDA3937_RS04035 0.18 -0.7
900,319 + DDA3937_RS04035 0.18 +0.5
900,319 + DDA3937_RS04035 0.18 -0.4
900,320 - DDA3937_RS04035 0.18 +0.1
900,371 + DDA3937_RS04035 0.22 +0.7
900,371 + DDA3937_RS04035 0.22 -0.7
900,403 - DDA3937_RS04035 0.24 -0.2
900,494 + DDA3937_RS04035 0.32 +1.3
900,495 - DDA3937_RS04035 0.32 -1.1
900,632 - DDA3937_RS04035 0.43 -1.7
900,794 - DDA3937_RS04035 0.56 -1.8
900,905 + DDA3937_RS04035 0.65 -2.5
900,905 + DDA3937_RS04035 0.65 +0.5
900,906 - DDA3937_RS04035 0.65 -1.9
900,906 - DDA3937_RS04035 0.65 -1.1
900,924 - DDA3937_RS04035 0.66 -1.8
901,022 + DDA3937_RS04035 0.74 -0.8
901,092 + DDA3937_RS04035 0.80 +1.1
901,092 + DDA3937_RS04035 0.80 -2.4
901,093 - -0.1
901,093 - DDA3937_RS04035 0.80 -1.1

Or see this region's nucleotide sequence