Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18970 and DDA3937_RS18975 are separated by 12 nucleotides DDA3937_RS18975 and DDA3937_RS18980 are separated by 14 nucleotides DDA3937_RS18980 and DDA3937_RS18985 are separated by 156 nucleotides DDA3937_RS18985 and DDA3937_RS18990 are separated by 140 nucleotides DDA3937_RS18990 and DDA3937_RS18995 are separated by 155 nucleotides
DDA3937_RS18970: DDA3937_RS18970 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,336,606 to 4,337,340
_RS18970
DDA3937_RS18975: DDA3937_RS18975 - fumarate reductase subunit FrdC, at 4,337,353 to 4,337,748
_RS18975
DDA3937_RS18980: DDA3937_RS18980 - fumarate reductase subunit FrdD, at 4,337,763 to 4,338,119
_RS18980
DDA3937_RS18985: DDA3937_RS18985 - outer membrane lipoprotein Blc, at 4,338,276 to 4,338,815
_RS18985
DDA3937_RS18990: DDA3937_RS18990 - DMT family protein, at 4,338,956 to 4,339,309
_RS18990
DDA3937_RS18995: DDA3937_RS18995 - elongation factor P, at 4,339,465 to 4,340,031
_RS18995
Position (kb) 4338
4339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4337.290 kb on - strand at 4337.338 kb on + strand at 4337.339 kb on - strand at 4337.367 kb on + strand at 4337.368 kb on - strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.430 kb on + strand, within DDA3937_RS18975 at 4337.430 kb on + strand, within DDA3937_RS18975 at 4337.431 kb on - strand, within DDA3937_RS18975 at 4337.431 kb on - strand, within DDA3937_RS18975 at 4337.648 kb on + strand, within DDA3937_RS18975 at 4337.649 kb on - strand, within DDA3937_RS18975 at 4337.913 kb on + strand, within DDA3937_RS18980 at 4337.913 kb on + strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.939 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.117 kb on + strand at 4338.117 kb on + strand at 4338.117 kb on + strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.165 kb on - strand at 4338.235 kb on - strand at 4338.240 kb on + strand at 4338.282 kb on + strand at 4338.282 kb on + strand at 4338.282 kb on + strand at 4338.283 kb on - strand at 4338.295 kb on + strand at 4338.296 kb on - strand at 4338.296 kb on - strand at 4338.387 kb on + strand, within DDA3937_RS18985 at 4338.387 kb on + strand, within DDA3937_RS18985 at 4338.388 kb on - strand, within DDA3937_RS18985 at 4338.390 kb on - strand, within DDA3937_RS18985 at 4338.403 kb on - strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.553 kb on - strand, within DDA3937_RS18985 at 4338.553 kb on - strand, within DDA3937_RS18985 at 4338.609 kb on + strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.621 kb on - strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.645 kb on + strand, within DDA3937_RS18985 at 4338.681 kb on + strand, within DDA3937_RS18985 at 4338.681 kb on + strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.778 kb on + strand at 4338.779 kb on - strand at 4338.779 kb on - strand at 4338.814 kb on - strand at 4338.814 kb on - strand at 4338.814 kb on - strand at 4338.822 kb on + strand at 4338.870 kb on - strand at 4338.939 kb on + strand at 4338.939 kb on + strand at 4338.982 kb on + strand at 4338.982 kb on + strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.024 kb on - strand, within DDA3937_RS18990 at 4339.051 kb on + strand, within DDA3937_RS18990 at 4339.052 kb on - strand, within DDA3937_RS18990 at 4339.052 kb on - strand, within DDA3937_RS18990 at 4339.069 kb on + strand, within DDA3937_RS18990 at 4339.070 kb on - strand, within DDA3937_RS18990 at 4339.164 kb on + strand, within DDA3937_RS18990 at 4339.165 kb on - strand, within DDA3937_RS18990 at 4339.165 kb on - strand, within DDA3937_RS18990 at 4339.165 kb on - strand, within DDA3937_RS18990 at 4339.258 kb on + strand, within DDA3937_RS18990 at 4339.259 kb on - strand, within DDA3937_RS18990 at 4339.259 kb on - strand, within DDA3937_RS18990 at 4339.262 kb on + strand, within DDA3937_RS18990 at 4339.262 kb on + strand, within DDA3937_RS18990 at 4339.262 kb on + strand, within DDA3937_RS18990 at 4339.263 kb on - strand, within DDA3937_RS18990 at 4339.263 kb on - strand, within DDA3937_RS18990 at 4339.263 kb on - strand, within DDA3937_RS18990 at 4339.267 kb on + strand, within DDA3937_RS18990 at 4339.267 kb on + strand, within DDA3937_RS18990 at 4339.291 kb on + strand at 4339.294 kb on + strand at 4339.294 kb on + strand at 4339.295 kb on - strand at 4339.309 kb on + strand at 4339.339 kb on - strand at 4339.339 kb on - strand at 4339.341 kb on + strand at 4339.341 kb on + strand at 4339.341 kb on + strand at 4339.342 kb on - strand at 4339.342 kb on - strand at 4339.342 kb on - strand at 4339.342 kb on - strand at 4339.360 kb on + strand at 4339.361 kb on - strand at 4339.377 kb on + strand at 4339.377 kb on + strand at 4339.378 kb on - strand at 4339.378 kb on - strand at 4339.378 kb on - strand at 4339.378 kb on - strand at 4339.430 kb on - strand at 4339.450 kb on + strand at 4339.451 kb on - strand at 4339.466 kb on + strand at 4339.466 kb on + strand at 4339.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 4,337,290 - -0.1 4,337,338 + +2.1 4,337,339 - -3.3 4,337,367 + -0.3 4,337,368 - -0.8 4,337,374 + -2.4 4,337,374 + -0.9 4,337,374 + -0.4 4,337,374 + -1.3 4,337,374 + -0.7 4,337,374 + +0.2 4,337,374 + -0.3 4,337,375 - -0.1 4,337,375 - -0.2 4,337,375 - -0.7 4,337,375 - -0.2 4,337,375 - -1.7 4,337,428 + DDA3937_RS18975 0.19 -0.9 4,337,428 + DDA3937_RS18975 0.19 -2.0 4,337,428 + DDA3937_RS18975 0.19 -0.2 4,337,428 + DDA3937_RS18975 0.19 -2.2 4,337,428 + DDA3937_RS18975 0.19 -0.3 4,337,428 + DDA3937_RS18975 0.19 -0.3 4,337,428 + DDA3937_RS18975 0.19 -0.3 4,337,428 + DDA3937_RS18975 0.19 -1.2 4,337,428 + DDA3937_RS18975 0.19 -1.0 4,337,428 + DDA3937_RS18975 0.19 -1.6 4,337,428 + -1.3 4,337,428 + DDA3937_RS18975 0.19 -0.1 4,337,429 - DDA3937_RS18975 0.19 +0.0 4,337,429 - DDA3937_RS18975 0.19 -1.3 4,337,429 - DDA3937_RS18975 0.19 -1.7 4,337,429 - DDA3937_RS18975 0.19 -0.4 4,337,429 - DDA3937_RS18975 0.19 -0.7 4,337,430 + DDA3937_RS18975 0.19 -1.2 4,337,430 + DDA3937_RS18975 0.19 +0.7 4,337,431 - DDA3937_RS18975 0.20 -0.3 4,337,431 - DDA3937_RS18975 0.20 -0.4 4,337,648 + DDA3937_RS18975 0.74 -1.9 4,337,649 - DDA3937_RS18975 0.75 -2.8 4,337,913 + DDA3937_RS18980 0.42 -0.1 4,337,913 + DDA3937_RS18980 0.42 +1.3 4,337,914 - DDA3937_RS18980 0.42 -2.3 4,337,914 - DDA3937_RS18980 0.42 -0.9 4,337,914 - DDA3937_RS18980 0.42 -2.3 4,337,914 - DDA3937_RS18980 0.42 -1.7 4,337,939 + DDA3937_RS18980 0.49 +1.1 4,338,063 + DDA3937_RS18980 0.84 +1.3 4,338,063 + DDA3937_RS18980 0.84 -2.4 4,338,063 + DDA3937_RS18980 0.84 +0.0 4,338,117 + +0.2 4,338,117 + -0.7 4,338,117 + +0.8 4,338,118 - -1.2 4,338,118 - +0.5 4,338,118 - +1.3 4,338,118 - -1.2 4,338,165 - -2.2 4,338,235 - -1.7 4,338,240 + +2.5 4,338,282 + -1.3 4,338,282 + -0.0 4,338,282 + -0.1 4,338,283 - -0.2 4,338,295 + -0.7 4,338,296 - -0.1 4,338,296 - -0.5 4,338,387 + DDA3937_RS18985 0.21 +0.7 4,338,387 + DDA3937_RS18985 0.21 +0.1 4,338,388 - DDA3937_RS18985 0.21 +1.5 4,338,390 - DDA3937_RS18985 0.21 +0.9 4,338,403 - DDA3937_RS18985 0.24 +0.3 4,338,462 + DDA3937_RS18985 0.34 -0.6 4,338,462 + DDA3937_RS18985 0.34 -0.6 4,338,462 + DDA3937_RS18985 0.34 -1.7 4,338,462 + DDA3937_RS18985 0.34 +0.5 4,338,463 - DDA3937_RS18985 0.35 +1.4 4,338,463 - DDA3937_RS18985 0.35 -1.9 4,338,463 - DDA3937_RS18985 0.35 -0.8 4,338,463 - DDA3937_RS18985 0.35 -0.1 4,338,463 - DDA3937_RS18985 0.35 -1.1 4,338,463 - DDA3937_RS18985 0.35 +0.3 4,338,552 + DDA3937_RS18985 0.51 -0.4 4,338,552 + DDA3937_RS18985 0.51 -0.1 4,338,552 + DDA3937_RS18985 0.51 -1.9 4,338,552 + DDA3937_RS18985 0.51 -0.7 4,338,553 - DDA3937_RS18985 0.51 +0.4 4,338,553 - DDA3937_RS18985 0.51 -0.3 4,338,609 + DDA3937_RS18985 0.62 -1.6 4,338,619 - DDA3937_RS18985 0.64 -1.9 4,338,619 - DDA3937_RS18985 0.64 +2.3 4,338,619 - DDA3937_RS18985 0.64 -0.7 4,338,621 - DDA3937_RS18985 0.64 -1.1 4,338,625 + DDA3937_RS18985 0.65 +0.9 4,338,625 + DDA3937_RS18985 0.65 -0.4 4,338,625 + DDA3937_RS18985 0.65 -0.6 4,338,626 - DDA3937_RS18985 0.65 -0.2 4,338,626 - DDA3937_RS18985 0.65 -0.3 4,338,626 - -1.3 4,338,626 - DDA3937_RS18985 0.65 -1.0 4,338,626 - DDA3937_RS18985 0.65 -1.6 4,338,645 + DDA3937_RS18985 0.68 -2.4 4,338,681 + DDA3937_RS18985 0.75 -1.6 4,338,681 + DDA3937_RS18985 0.75 +0.1 4,338,682 - DDA3937_RS18985 0.75 -1.9 4,338,682 - DDA3937_RS18985 0.75 +0.3 4,338,682 - DDA3937_RS18985 0.75 -1.7 4,338,778 + +1.7 4,338,779 - -1.3 4,338,779 - -1.9 4,338,814 - -0.0 4,338,814 - -0.6 4,338,814 - -1.7 4,338,822 + +1.8 4,338,870 - +1.4 4,338,939 + -2.2 4,338,939 + -1.3 4,338,982 + -2.8 4,338,982 + -0.3 4,338,983 - -3.0 4,338,983 - -2.0 4,338,983 - -0.9 4,338,983 - -2.4 4,338,983 - +1.5 4,339,021 + DDA3937_RS18990 0.18 -1.3 4,339,021 + DDA3937_RS18990 0.18 -2.2 4,339,021 + DDA3937_RS18990 0.18 -0.3 4,339,021 + DDA3937_RS18990 0.18 +0.1 4,339,021 + DDA3937_RS18990 0.18 +0.5 4,339,022 - DDA3937_RS18990 0.19 -0.7 4,339,022 - DDA3937_RS18990 0.19 -1.7 4,339,022 - DDA3937_RS18990 0.19 +0.3 4,339,022 - DDA3937_RS18990 0.19 -1.0 4,339,022 - DDA3937_RS18990 0.19 -0.6 4,339,022 - DDA3937_RS18990 0.19 +0.5 4,339,022 - DDA3937_RS18990 0.19 +0.4 4,339,024 - DDA3937_RS18990 0.19 -0.8 4,339,051 + DDA3937_RS18990 0.27 +0.3 4,339,052 - DDA3937_RS18990 0.27 +1.4 4,339,052 - DDA3937_RS18990 0.27 -1.9 4,339,069 + DDA3937_RS18990 0.32 +0.9 4,339,070 - DDA3937_RS18990 0.32 +0.1 4,339,164 + DDA3937_RS18990 0.59 +1.1 4,339,165 - DDA3937_RS18990 0.59 -3.0 4,339,165 - DDA3937_RS18990 0.59 -0.9 4,339,165 - DDA3937_RS18990 0.59 +0.4 4,339,258 + DDA3937_RS18990 0.85 +0.6 4,339,259 - DDA3937_RS18990 0.86 +0.3 4,339,259 - DDA3937_RS18990 0.86 +1.3 4,339,262 + DDA3937_RS18990 0.86 -0.0 4,339,262 + DDA3937_RS18990 0.86 +0.1 4,339,262 + DDA3937_RS18990 0.86 +1.0 4,339,263 - DDA3937_RS18990 0.87 +0.9 4,339,263 - DDA3937_RS18990 0.87 -2.1 4,339,263 - DDA3937_RS18990 0.87 +0.8 4,339,267 + DDA3937_RS18990 0.88 -0.3 4,339,267 + DDA3937_RS18990 0.88 -1.7 4,339,291 + +0.3 4,339,294 + -2.8 4,339,294 + -0.2 4,339,295 - +0.3 4,339,309 + -0.3 4,339,339 - -0.6 4,339,339 - +0.6 4,339,341 + -0.7 4,339,341 + +0.8 4,339,341 + +1.6 4,339,342 - -1.6 4,339,342 - -0.6 4,339,342 - +0.3 4,339,342 - +0.6 4,339,360 + +0.5 4,339,361 - -0.2 4,339,377 + -0.0 4,339,377 + +1.8 4,339,378 - +1.1 4,339,378 - +0.0 4,339,378 - -0.4 4,339,378 - -0.1 4,339,430 - -0.6 4,339,450 + -2.2 4,339,451 - -1.7 4,339,466 + +4.8 4,339,466 + -0.9 4,339,466 + -0.6
Or see this region's nucleotide sequence