Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18965

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18960 and DDA3937_RS18965 are separated by 473 nucleotidesDDA3937_RS18965 and DDA3937_RS18970 overlap by 8 nucleotidesDDA3937_RS18970 and DDA3937_RS18975 are separated by 12 nucleotides DDA3937_RS18960: DDA3937_RS18960 - elongation factor P--(R)-beta-lysine ligase, at 4,333,366 to 4,334,343 _RS18960 DDA3937_RS18965: DDA3937_RS18965 - fumarate reductase (quinol) flavoprotein subunit, at 4,334,817 to 4,336,613 _RS18965 DDA3937_RS18970: DDA3937_RS18970 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,336,606 to 4,337,340 _RS18970 DDA3937_RS18975: DDA3937_RS18975 - fumarate reductase subunit FrdC, at 4,337,353 to 4,337,748 _RS18975 Position (kb) 4334 4335 4336 4337Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4334.004 kb on + strand, within DDA3937_RS18960at 4334.004 kb on + strand, within DDA3937_RS18960at 4334.067 kb on - strand, within DDA3937_RS18960at 4334.124 kb on + strand, within DDA3937_RS18960at 4334.125 kb on - strand, within DDA3937_RS18960at 4334.125 kb on - strand, within DDA3937_RS18960at 4334.130 kb on - strand, within DDA3937_RS18960at 4334.429 kb on + strandat 4334.430 kb on - strandat 4334.430 kb on - strandat 4334.432 kb on - strandat 4334.432 kb on - strandat 4334.445 kb on + strandat 4334.449 kb on + strandat 4334.449 kb on + strandat 4334.449 kb on + strandat 4334.450 kb on - strandat 4334.454 kb on + strandat 4334.454 kb on + strandat 4334.458 kb on + strandat 4334.458 kb on + strandat 4334.458 kb on + strandat 4334.459 kb on - strandat 4334.459 kb on - strandat 4334.459 kb on - strandat 4334.459 kb on - strandat 4334.459 kb on - strandat 4334.466 kb on + strandat 4334.467 kb on - strandat 4334.471 kb on - strandat 4334.471 kb on - strandat 4334.471 kb on - strandat 4334.533 kb on + strandat 4334.573 kb on + strandat 4334.574 kb on - strandat 4334.582 kb on - strandat 4334.583 kb on + strandat 4334.583 kb on + strandat 4334.584 kb on - strandat 4334.584 kb on - strandat 4334.584 kb on - strandat 4334.584 kb on - strandat 4334.584 kb on - strandat 4334.588 kb on - strandat 4334.591 kb on - strandat 4334.644 kb on - strandat 4334.644 kb on - strandat 4334.646 kb on - strandat 4334.689 kb on - strandat 4334.692 kb on + strandat 4334.693 kb on - strandat 4334.770 kb on + strandat 4334.771 kb on - strandat 4334.797 kb on + strandat 4334.797 kb on + strandat 4334.802 kb on - strandat 4334.869 kb on + strandat 4334.999 kb on + strand, within DDA3937_RS18965at 4335.296 kb on + strand, within DDA3937_RS18965at 4335.297 kb on - strand, within DDA3937_RS18965at 4335.415 kb on - strand, within DDA3937_RS18965at 4335.415 kb on - strand, within DDA3937_RS18965at 4335.420 kb on + strand, within DDA3937_RS18965at 4335.420 kb on + strand, within DDA3937_RS18965at 4335.420 kb on + strand, within DDA3937_RS18965at 4335.420 kb on + strand, within DDA3937_RS18965at 4335.420 kb on + strand, within DDA3937_RS18965at 4335.421 kb on - strand, within DDA3937_RS18965at 4335.510 kb on + strand, within DDA3937_RS18965at 4335.603 kb on + strand, within DDA3937_RS18965at 4335.616 kb on - strand, within DDA3937_RS18965at 4335.660 kb on + strand, within DDA3937_RS18965at 4335.660 kb on + strand, within DDA3937_RS18965at 4335.660 kb on + strand, within DDA3937_RS18965at 4335.660 kb on + strand, within DDA3937_RS18965at 4335.660 kb on + strand, within DDA3937_RS18965at 4335.661 kb on - strand, within DDA3937_RS18965at 4335.661 kb on - strand, within DDA3937_RS18965at 4335.756 kb on + strand, within DDA3937_RS18965at 4335.757 kb on - strand, within DDA3937_RS18965at 4335.757 kb on - strand, within DDA3937_RS18965at 4335.766 kb on + strand, within DDA3937_RS18965at 4335.766 kb on + strand, within DDA3937_RS18965at 4335.767 kb on - strand, within DDA3937_RS18965at 4335.767 kb on - strand, within DDA3937_RS18965at 4335.767 kb on - strand, within DDA3937_RS18965at 4335.831 kb on + strand, within DDA3937_RS18965at 4335.831 kb on + strand, within DDA3937_RS18965at 4335.831 kb on + strand, within DDA3937_RS18965at 4335.831 kb on + strand, within DDA3937_RS18965at 4335.885 kb on + strand, within DDA3937_RS18965at 4335.885 kb on + strand, within DDA3937_RS18965at 4335.886 kb on - strand, within DDA3937_RS18965at 4335.886 kb on - strand, within DDA3937_RS18965at 4336.211 kb on + strand, within DDA3937_RS18965at 4336.212 kb on - strand, within DDA3937_RS18965at 4336.212 kb on - strand, within DDA3937_RS18965at 4336.212 kb on - strand, within DDA3937_RS18965at 4336.330 kb on - strand, within DDA3937_RS18965at 4336.330 kb on - strand, within DDA3937_RS18965at 4336.330 kb on - strand, within DDA3937_RS18965at 4336.330 kb on - strand, within DDA3937_RS18965at 4336.330 kb on - strand, within DDA3937_RS18965at 4336.370 kb on + strand, within DDA3937_RS18965at 4336.370 kb on + strand, within DDA3937_RS18965at 4336.370 kb on + strand, within DDA3937_RS18965at 4336.370 kb on + strand, within DDA3937_RS18965at 4336.371 kb on - strand, within DDA3937_RS18965at 4336.371 kb on - strand, within DDA3937_RS18965at 4336.371 kb on - strand, within DDA3937_RS18965at 4336.371 kb on - strand, within DDA3937_RS18965at 4336.482 kb on + strandat 4336.483 kb on - strandat 4336.512 kb on + strandat 4336.612 kb on + strandat 4336.614 kb on + strandat 4336.645 kb on + strandat 4336.645 kb on + strandat 4336.646 kb on - strandat 4336.646 kb on - strandat 4336.646 kb on - strandat 4336.646 kb on - strandat 4336.648 kb on - strandat 4336.684 kb on + strand, within DDA3937_RS18970at 4336.684 kb on + strandat 4336.696 kb on + strand, within DDA3937_RS18970at 4336.696 kb on + strand, within DDA3937_RS18970at 4336.697 kb on - strand, within DDA3937_RS18970at 4336.697 kb on - strand, within DDA3937_RS18970at 4336.697 kb on - strand, within DDA3937_RS18970at 4336.699 kb on - strand, within DDA3937_RS18970at 4336.732 kb on + strand, within DDA3937_RS18970at 4336.732 kb on + strand, within DDA3937_RS18970at 4336.733 kb on - strand, within DDA3937_RS18970at 4336.733 kb on - strand, within DDA3937_RS18970at 4336.765 kb on + strand, within DDA3937_RS18970at 4336.766 kb on - strandat 4336.839 kb on + strand, within DDA3937_RS18970at 4336.839 kb on + strand, within DDA3937_RS18970at 4336.839 kb on + strand, within DDA3937_RS18970at 4336.840 kb on - strand, within DDA3937_RS18970at 4336.859 kb on - strand, within DDA3937_RS18970at 4336.859 kb on - strand, within DDA3937_RS18970at 4336.859 kb on - strand, within DDA3937_RS18970at 4336.890 kb on + strand, within DDA3937_RS18970at 4336.962 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.963 kb on + strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.964 kb on - strand, within DDA3937_RS18970at 4336.965 kb on + strand, within DDA3937_RS18970at 4336.965 kb on + strand, within DDA3937_RS18970at 4336.966 kb on - strand, within DDA3937_RS18970at 4336.966 kb on - strand, within DDA3937_RS18970at 4336.966 kb on - strand, within DDA3937_RS18970at 4336.966 kb on - strand, within DDA3937_RS18970at 4336.966 kb on - strand, within DDA3937_RS18970at 4336.966 kb on - strand, within DDA3937_RS18970at 4337.032 kb on + strand, within DDA3937_RS18970at 4337.032 kb on + strand, within DDA3937_RS18970at 4337.032 kb on + strand, within DDA3937_RS18970at 4337.033 kb on - strand, within DDA3937_RS18970at 4337.033 kb on - strand, within DDA3937_RS18970at 4337.033 kb on - strand, within DDA3937_RS18970at 4337.033 kb on - strand, within DDA3937_RS18970at 4337.144 kb on - strand, within DDA3937_RS18970at 4337.181 kb on + strand, within DDA3937_RS18970at 4337.182 kb on - strand, within DDA3937_RS18970at 4337.182 kb on - strand, within DDA3937_RS18970at 4337.220 kb on + strand, within DDA3937_RS18970at 4337.221 kb on - strand, within DDA3937_RS18970at 4337.233 kb on + strand, within DDA3937_RS18970at 4337.290 kb on - strandat 4337.338 kb on + strandat 4337.339 kb on - strandat 4337.367 kb on + strandat 4337.368 kb on - strandat 4337.374 kb on + strandat 4337.374 kb on + strandat 4337.374 kb on + strandat 4337.374 kb on + strandat 4337.374 kb on + strandat 4337.374 kb on + strandat 4337.374 kb on + strandat 4337.375 kb on - strandat 4337.375 kb on - strandat 4337.375 kb on - strandat 4337.375 kb on - strandat 4337.375 kb on - strandat 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strand, within DDA3937_RS18975at 4337.428 kb on + strandat 4337.428 kb on + strand, within DDA3937_RS18975at 4337.429 kb on - strand, within DDA3937_RS18975at 4337.429 kb on - strand, within DDA3937_RS18975at 4337.429 kb on - strand, within DDA3937_RS18975at 4337.429 kb on - strand, within DDA3937_RS18975at 4337.429 kb on - strand, within DDA3937_RS18975at 4337.430 kb on + strand, within DDA3937_RS18975at 4337.430 kb on + strand, within DDA3937_RS18975at 4337.431 kb on - strand, within DDA3937_RS18975at 4337.431 kb on - strand, within DDA3937_RS18975

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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4,334,004 + DDA3937_RS18960 0.65 -1.2
4,334,004 + DDA3937_RS18960 0.65 -1.9
4,334,067 - DDA3937_RS18960 0.72 +1.3
4,334,124 + DDA3937_RS18960 0.78 +1.3
4,334,125 - DDA3937_RS18960 0.78 +0.9
4,334,125 - DDA3937_RS18960 0.78 +1.4
4,334,130 - DDA3937_RS18960 0.78 -0.2
4,334,429 + -0.3
4,334,430 - +0.2
4,334,430 - -0.2
4,334,432 - +0.3
4,334,432 - -1.1
4,334,445 + -1.7
4,334,449 + +1.0
4,334,449 + -1.1
4,334,449 + -1.5
4,334,450 - -0.6
4,334,454 + -4.9
4,334,454 + -0.5
4,334,458 + +0.9
4,334,458 + -1.9
4,334,458 + -1.5
4,334,459 - -1.2
4,334,459 - -0.2
4,334,459 - -2.1
4,334,459 - +1.9
4,334,459 - +1.4
4,334,466 + -2.4
4,334,467 - -0.6
4,334,471 - -1.2
4,334,471 - +1.0
4,334,471 - -0.7
4,334,533 + +0.3
4,334,573 + +0.3
4,334,574 - -0.5
4,334,582 - -0.3
4,334,583 + -1.9
4,334,583 + +0.4
4,334,584 - -1.1
4,334,584 - -0.4
4,334,584 - -0.7
4,334,584 - +0.0
4,334,584 - +1.9
4,334,588 - -0.1
4,334,591 - -0.9
4,334,644 - -2.2
4,334,644 - -0.2
4,334,646 - +0.4
4,334,689 - -0.1
4,334,692 + +0.4
4,334,693 - -0.3
4,334,770 + +0.8
4,334,771 - -0.3
4,334,797 + +1.7
4,334,797 + +1.6
4,334,802 - -1.7
4,334,869 + -1.1
4,334,999 + DDA3937_RS18965 0.10 -1.2
4,335,296 + DDA3937_RS18965 0.27 -0.2
4,335,297 - DDA3937_RS18965 0.27 +1.0
4,335,415 - DDA3937_RS18965 0.33 -0.5
4,335,415 - DDA3937_RS18965 0.33 -0.7
4,335,420 + DDA3937_RS18965 0.34 +1.3
4,335,420 + DDA3937_RS18965 0.34 -2.4
4,335,420 + DDA3937_RS18965 0.34 +0.9
4,335,420 + DDA3937_RS18965 0.34 -0.1
4,335,420 + DDA3937_RS18965 0.34 +0.9
4,335,421 - DDA3937_RS18965 0.34 -1.1
4,335,510 + DDA3937_RS18965 0.39 +1.1
4,335,603 + DDA3937_RS18965 0.44 -1.5
4,335,616 - DDA3937_RS18965 0.44 -0.8
4,335,660 + DDA3937_RS18965 0.47 -1.1
4,335,660 + DDA3937_RS18965 0.47 -0.7
4,335,660 + DDA3937_RS18965 0.47 +0.8
4,335,660 + DDA3937_RS18965 0.47 +1.3
4,335,660 + DDA3937_RS18965 0.47 -1.9
4,335,661 - DDA3937_RS18965 0.47 +2.1
4,335,661 - DDA3937_RS18965 0.47 -1.1
4,335,756 + DDA3937_RS18965 0.52 -2.1
4,335,757 - DDA3937_RS18965 0.52 +1.4
4,335,757 - DDA3937_RS18965 0.52 -1.6
4,335,766 + DDA3937_RS18965 0.53 -1.6
4,335,766 + DDA3937_RS18965 0.53 -3.4
4,335,767 - DDA3937_RS18965 0.53 -0.6
4,335,767 - DDA3937_RS18965 0.53 +4.7
4,335,767 - DDA3937_RS18965 0.53 -1.2
4,335,831 + DDA3937_RS18965 0.56 -1.3
4,335,831 + DDA3937_RS18965 0.56 -0.2
4,335,831 + DDA3937_RS18965 0.56 -0.1
4,335,831 + DDA3937_RS18965 0.56 -1.1
4,335,885 + DDA3937_RS18965 0.59 -0.6
4,335,885 + DDA3937_RS18965 0.59 +0.6
4,335,886 - DDA3937_RS18965 0.59 -2.9
4,335,886 - DDA3937_RS18965 0.59 -0.1
4,336,211 + DDA3937_RS18965 0.78 -0.7
4,336,212 - DDA3937_RS18965 0.78 -0.4
4,336,212 - DDA3937_RS18965 0.78 -0.7
4,336,212 - DDA3937_RS18965 0.78 +1.3
4,336,330 - DDA3937_RS18965 0.84 +0.1
4,336,330 - DDA3937_RS18965 0.84 -2.4
4,336,330 - DDA3937_RS18965 0.84 +0.3
4,336,330 - DDA3937_RS18965 0.84 +1.1
4,336,330 - DDA3937_RS18965 0.84 +0.1
4,336,370 + DDA3937_RS18965 0.86 +0.3
4,336,370 + DDA3937_RS18965 0.86 +0.3
4,336,370 + DDA3937_RS18965 0.86 +0.3
4,336,370 + DDA3937_RS18965 0.86 +0.7
4,336,371 - DDA3937_RS18965 0.86 +1.5
4,336,371 - DDA3937_RS18965 0.86 +0.1
4,336,371 - DDA3937_RS18965 0.86 -3.3
4,336,371 - DDA3937_RS18965 0.86 +1.0
4,336,482 + -1.9
4,336,483 - +0.5
4,336,512 + -2.8
4,336,612 + +1.0
4,336,614 + -1.6
4,336,645 + -0.4
4,336,645 + -2.4
4,336,646 - -1.4
4,336,646 - +0.8
4,336,646 - -0.2
4,336,646 - -0.0
4,336,648 - -0.2
4,336,684 + DDA3937_RS18970 0.11 -1.6
4,336,684 + -1.9
4,336,696 + DDA3937_RS18970 0.12 +0.6
4,336,696 + DDA3937_RS18970 0.12 -0.9
4,336,697 - DDA3937_RS18970 0.12 +0.8
4,336,697 - DDA3937_RS18970 0.12 -0.9
4,336,697 - DDA3937_RS18970 0.12 -1.3
4,336,699 - DDA3937_RS18970 0.13 -1.7
4,336,732 + DDA3937_RS18970 0.17 +0.1
4,336,732 + DDA3937_RS18970 0.17 +1.8
4,336,733 - DDA3937_RS18970 0.17 +1.2
4,336,733 - DDA3937_RS18970 0.17 +0.1
4,336,765 + DDA3937_RS18970 0.22 -1.0
4,336,766 - -1.3
4,336,839 + DDA3937_RS18970 0.32 +1.3
4,336,839 + DDA3937_RS18970 0.32 +1.3
4,336,839 + DDA3937_RS18970 0.32 +2.6
4,336,840 - DDA3937_RS18970 0.32 +0.5
4,336,859 - DDA3937_RS18970 0.34 +0.4
4,336,859 - DDA3937_RS18970 0.34 -0.5
4,336,859 - DDA3937_RS18970 0.34 -0.3
4,336,890 + DDA3937_RS18970 0.39 +0.9
4,336,962 + DDA3937_RS18970 0.48 -0.6
4,336,963 + DDA3937_RS18970 0.49 -1.5
4,336,963 + DDA3937_RS18970 0.49 +1.0
4,336,963 + DDA3937_RS18970 0.49 +0.8
4,336,963 + DDA3937_RS18970 0.49 +1.8
4,336,963 + DDA3937_RS18970 0.49 +3.1
4,336,963 + DDA3937_RS18970 0.49 -2.1
4,336,963 + DDA3937_RS18970 0.49 -1.7
4,336,963 + DDA3937_RS18970 0.49 +0.1
4,336,963 + DDA3937_RS18970 0.49 -1.1
4,336,964 - DDA3937_RS18970 0.49 -0.2
4,336,964 - DDA3937_RS18970 0.49 -0.7
4,336,964 - DDA3937_RS18970 0.49 -1.0
4,336,964 - DDA3937_RS18970 0.49 +0.8
4,336,964 - DDA3937_RS18970 0.49 -2.6
4,336,964 - DDA3937_RS18970 0.49 +2.0
4,336,964 - DDA3937_RS18970 0.49 +0.5
4,336,964 - DDA3937_RS18970 0.49 +0.8
4,336,964 - DDA3937_RS18970 0.49 -0.8
4,336,964 - DDA3937_RS18970 0.49 -0.9
4,336,965 + DDA3937_RS18970 0.49 -0.3
4,336,965 + DDA3937_RS18970 0.49 -1.9
4,336,966 - DDA3937_RS18970 0.49 +1.0
4,336,966 - DDA3937_RS18970 0.49 -3.1
4,336,966 - DDA3937_RS18970 0.49 +1.0
4,336,966 - DDA3937_RS18970 0.49 +1.6
4,336,966 - DDA3937_RS18970 0.49 +0.3
4,336,966 - DDA3937_RS18970 0.49 -1.3
4,337,032 + DDA3937_RS18970 0.58 +1.1
4,337,032 + DDA3937_RS18970 0.58 -1.2
4,337,032 + DDA3937_RS18970 0.58 -0.2
4,337,033 - DDA3937_RS18970 0.58 -1.1
4,337,033 - DDA3937_RS18970 0.58 +0.5
4,337,033 - DDA3937_RS18970 0.58 -0.7
4,337,033 - DDA3937_RS18970 0.58 +0.8
4,337,144 - DDA3937_RS18970 0.73 -1.3
4,337,181 + DDA3937_RS18970 0.78 -2.7
4,337,182 - DDA3937_RS18970 0.78 -2.7
4,337,182 - DDA3937_RS18970 0.78 +0.2
4,337,220 + DDA3937_RS18970 0.84 -0.4
4,337,221 - DDA3937_RS18970 0.84 +4.4
4,337,233 + DDA3937_RS18970 0.85 -2.2
4,337,290 - -0.1
4,337,338 + +2.1
4,337,339 - -3.3
4,337,367 + -0.3
4,337,368 - -0.8
4,337,374 + -2.4
4,337,374 + -0.9
4,337,374 + -0.4
4,337,374 + -1.3
4,337,374 + -0.7
4,337,374 + +0.2
4,337,374 + -0.3
4,337,375 - -0.1
4,337,375 - -0.2
4,337,375 - -0.7
4,337,375 - -0.2
4,337,375 - -1.7
4,337,428 + DDA3937_RS18975 0.19 -0.9
4,337,428 + DDA3937_RS18975 0.19 -2.0
4,337,428 + DDA3937_RS18975 0.19 -0.2
4,337,428 + DDA3937_RS18975 0.19 -2.2
4,337,428 + DDA3937_RS18975 0.19 -0.3
4,337,428 + DDA3937_RS18975 0.19 -0.3
4,337,428 + DDA3937_RS18975 0.19 -0.3
4,337,428 + DDA3937_RS18975 0.19 -1.2
4,337,428 + DDA3937_RS18975 0.19 -1.0
4,337,428 + DDA3937_RS18975 0.19 -1.6
4,337,428 + -1.3
4,337,428 + DDA3937_RS18975 0.19 -0.1
4,337,429 - DDA3937_RS18975 0.19 +0.0
4,337,429 - DDA3937_RS18975 0.19 -1.3
4,337,429 - DDA3937_RS18975 0.19 -1.7
4,337,429 - DDA3937_RS18975 0.19 -0.4
4,337,429 - DDA3937_RS18975 0.19 -0.7
4,337,430 + DDA3937_RS18975 0.19 -1.2
4,337,430 + DDA3937_RS18975 0.19 +0.7
4,337,431 - DDA3937_RS18975 0.20 -0.3
4,337,431 - DDA3937_RS18975 0.20 -0.4

Or see this region's nucleotide sequence