Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13455

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
3,067,918	+		DDA3937_RS13445	0.88	-1.3
3,067,935	-				-3.5
3,068,048	+				+0.5
3,068,048	+				-2.3
3,068,048	+				-2.1
3,068,048	+				-2.9
3,068,048	+				-5.0
3,068,048	+				-3.6
3,068,048	+				-2.4
3,068,048	+				+0.7
3,068,049	-				+0.0
3,068,049	-				-3.1
3,068,049	-				-0.5
3,068,049	-				-3.9
3,068,049	-				-3.5
3,068,049	-				-0.8
3,068,049	-				-1.1
3,068,049	-				-2.1
3,068,049	-				-2.8
3,068,049	-				-3.3
3,068,049	-				-3.7
3,068,049	-				-2.5
3,068,049	-				-2.3
3,068,063	+				-3.5
3,068,079	+				-5.3
3,068,126	+				-0.9
3,068,127	-				-4.2
3,068,127	-				-2.3
3,068,127	-				-0.5
3,068,141	+		DDA3937_RS13450	0.11	-2.8
3,068,141	+		DDA3937_RS13450	0.11	-1.3
3,068,141	+		DDA3937_RS13450	0.11	-1.0
3,068,142	-		DDA3937_RS13450	0.11	-1.9
3,068,142	-		DDA3937_RS13450	0.11	-4.5
3,068,142	-		DDA3937_RS13450	0.11	-2.6
3,068,142	-		DDA3937_RS13450	0.11	-3.2
3,068,142	-		DDA3937_RS13450	0.11	-1.8
3,068,148	+		DDA3937_RS13450	0.12	-0.9
3,068,196	+		DDA3937_RS13450	0.19	-1.9
3,068,196	+		DDA3937_RS13450	0.19	-1.9
3,068,196	+		DDA3937_RS13450	0.19	-3.1
3,068,196	+		DDA3937_RS13450	0.19	-4.8
3,068,196	+		DDA3937_RS13450	0.19	-2.2
3,068,197	-		DDA3937_RS13450	0.19	-4.6
3,068,197	-		DDA3937_RS13450	0.19	-2.4
3,068,197	-		DDA3937_RS13450	0.19	-1.8
3,068,229	+		DDA3937_RS13450	0.23	-2.4
3,068,247	+		DDA3937_RS13450	0.26	-1.5
3,068,248	-		DDA3937_RS13450	0.26	-2.9
3,068,338	-				-0.5
3,068,338	-		DDA3937_RS13450	0.38	-4.8
3,068,338	-				-1.8
3,068,539	+		DDA3937_RS13450	0.67	+0.9
3,068,540	-		DDA3937_RS13450	0.67	-1.9
3,068,582	+		DDA3937_RS13450	0.73	-2.4
3,068,582	+		DDA3937_RS13450	0.73	-2.1
3,068,582	+		DDA3937_RS13450	0.73	-2.5
3,068,582	+		DDA3937_RS13450	0.73	-2.9
3,068,582	+		DDA3937_RS13450	0.73	-2.6
3,068,582	+		DDA3937_RS13450	0.73	-2.1
3,068,582	+		DDA3937_RS13450	0.73	-3.3
3,068,582	+		DDA3937_RS13450	0.73	-2.3
3,068,582	+		DDA3937_RS13450	0.73	-2.3
3,068,583	-		DDA3937_RS13450	0.73	-0.6
3,068,583	-		DDA3937_RS13450	0.73	-1.5
3,068,583	-				-0.2
3,068,583	-		DDA3937_RS13450	0.73	-1.8
3,068,626	-		DDA3937_RS13450	0.79	-1.3
3,068,633	-		DDA3937_RS13450	0.80	-3.0
3,068,686	+		DDA3937_RS13450	0.87	-2.1
3,068,686	+		DDA3937_RS13450	0.87	-2.6
3,068,686	+		DDA3937_RS13450	0.87	-0.2
3,068,686	+		DDA3937_RS13450	0.87	-1.8
3,068,686	+		DDA3937_RS13450	0.87	-2.3
3,068,686	+		DDA3937_RS13450	0.87	-3.5
3,068,686	+		DDA3937_RS13450	0.87	-4.5
3,068,686	+		DDA3937_RS13450	0.87	-2.2
3,068,686	+		DDA3937_RS13450	0.87	-4.0
3,068,686	+		DDA3937_RS13450	0.87	-1.9
3,068,686	+		DDA3937_RS13450	0.87	-2.8
3,068,687	-		DDA3937_RS13450	0.87	-1.8
3,068,687	-		DDA3937_RS13450	0.87	-0.2
3,068,687	-		DDA3937_RS13450	0.87	-2.5
3,068,687	-		DDA3937_RS13450	0.87	-1.3
3,068,687	-		DDA3937_RS13450	0.87	-3.1
3,068,687	-		DDA3937_RS13450	0.87	-3.6
3,068,687	-		DDA3937_RS13450	0.87	-1.9
3,068,687	-		DDA3937_RS13450	0.87	-4.0
3,068,688	+		DDA3937_RS13450	0.87	-2.1
3,068,688	+		DDA3937_RS13450	0.87	-3.5
3,068,688	+		DDA3937_RS13450	0.87	-0.8
3,068,689	-		DDA3937_RS13450	0.87	-2.9
3,068,689	-		DDA3937_RS13450	0.87	-2.5
3,068,689	-		DDA3937_RS13450	0.87	-2.6
3,068,689	-		DDA3937_RS13450	0.87	-3.6
3,068,689	-		DDA3937_RS13450	0.87	-3.0
3,068,689	-		DDA3937_RS13450	0.87	-1.8
3,068,689	-		DDA3937_RS13450	0.87	-2.8
3,068,689	-		DDA3937_RS13450	0.87	-2.3
3,068,689	-		DDA3937_RS13450	0.87	-2.4
3,068,690	+		DDA3937_RS13450	0.88	-1.5
3,068,691	-		DDA3937_RS13450	0.88	-2.8
3,068,691	-		DDA3937_RS13450	0.88	-3.0
3,068,691	-		DDA3937_RS13450	0.88	-2.1
3,068,691	-		DDA3937_RS13450	0.88	-4.0
3,068,710	+				-5.0
3,068,711	-				-3.4
3,068,723	+				-4.0
3,068,723	+				-2.4
3,068,724	-				-2.4
3,068,813	+				-3.8
3,068,813	+				+0.1
3,068,814	-				-0.5
3,068,821	+				-1.9
3,068,821	+				-0.6
3,068,821	+				-4.0
3,068,821	+				-1.5
3,068,822	-				-0.9
3,068,822	-				+0.5
3,068,885	+				-1.3
3,068,885	+				+1.3
3,068,885	+				-0.9
3,068,885	+				-2.3
3,068,885	+				-1.9
3,068,886	-				-2.5
3,068,889	+				-5.5
3,068,890	-				-1.0
3,068,890	-				+0.5
3,068,890	-				-0.5
3,069,051	+		DDA3937_RS13455	0.18	-1.5
3,069,121	-		DDA3937_RS13455	0.27	-2.4
3,069,166	+		DDA3937_RS13455	0.32	-3.3
3,069,166	+		DDA3937_RS13455	0.32	-1.5
3,069,166	+		DDA3937_RS13455	0.32	-2.4
3,069,167	-		DDA3937_RS13455	0.33	-1.8
3,069,167	-		DDA3937_RS13455	0.33	-2.3
3,069,167	-		DDA3937_RS13455	0.33	-1.8
3,069,167	-		DDA3937_RS13455	0.33	-2.6
3,069,175	+		DDA3937_RS13455	0.34	-3.9
3,069,218	+		DDA3937_RS13455	0.39	-6.4
3,069,218	+		DDA3937_RS13455	0.39	-1.5
3,069,219	-		DDA3937_RS13455	0.39	+0.1
3,069,354	+		DDA3937_RS13455	0.56	-2.5
3,069,354	+		DDA3937_RS13455	0.56	-3.9
3,069,355	-		DDA3937_RS13455	0.57	-2.1
3,069,355	-		DDA3937_RS13455	0.57	-3.5
3,069,355	-		DDA3937_RS13455	0.57	-1.9
3,069,355	-		DDA3937_RS13455	0.57	-4.8
3,069,355	-		DDA3937_RS13455	0.57	-3.0
3,069,451	+		DDA3937_RS13455	0.69	-1.6
3,069,558	+		DDA3937_RS13455	0.83	-1.3
3,069,558	+		DDA3937_RS13455	0.83	-1.3
3,069,558	+		DDA3937_RS13455	0.83	-3.5
3,069,558	+		DDA3937_RS13455	0.83	-3.1
3,069,558	+		DDA3937_RS13455	0.83	-2.4
3,069,558	+		DDA3937_RS13455	0.83	-4.1
3,069,559	-		DDA3937_RS13455	0.83	+0.8
3,069,559	-		DDA3937_RS13455	0.83	-3.2
3,069,575	+		DDA3937_RS13455	0.85	-1.3
3,069,575	+		DDA3937_RS13455	0.85	-2.1
3,069,576	-		DDA3937_RS13455	0.85	-2.1
3,069,629	+				-4.0
3,069,630	-				-3.4
3,069,630	-				-1.6
3,069,631	+				-1.3
3,069,631	+				-3.0
3,069,631	+				-0.9
3,069,631	+				-4.2
3,069,631	+				-6.1
3,069,631	+				-1.8
3,069,631	+				-0.9
3,069,631	+				-2.1
3,069,632	-				-4.2
3,069,632	-				+0.5
3,069,632	-				+0.4
3,069,632	-				+0.1
3,069,632	-				-1.3
3,069,640	+				-1.8
3,069,640	+				-2.5
3,069,640	+				-2.3
3,069,641	-				-2.6
3,069,641	-				-2.5
3,069,643	+				-3.1
3,069,643	+				-3.2
3,069,643	+				-0.9
3,069,643	+				-3.5
3,069,643	+				-2.1
3,069,644	-				-4.6
3,069,644	-				-1.1
3,069,644	-				-0.5
3,069,644	-				-5.3
3,069,644	-				+0.1
3,069,680	+				-0.2
3,069,681	-				-5.3
3,069,722	+				-0.3
3,069,722	+				-0.4
3,069,722	+				-1.3
3,069,722	+				+0.1
3,069,723	-				-1.3
3,069,723	-				-2.3
3,069,723	-				-3.8
3,069,723	-				-1.8
3,069,736	+				-2.6
3,069,736	+				-1.8
3,069,756	+				-3.2
3,069,757	-				-1.8
3,069,840	+		DDA3937_RS13460	0.16	-2.3
3,069,840	+		DDA3937_RS13460	0.16	-2.8
3,069,840	+		DDA3937_RS13460	0.16	-4.0
3,069,841	-		DDA3937_RS13460	0.16	-4.7
3,069,841	-		DDA3937_RS13460	0.16	-2.3
3,069,862	+		DDA3937_RS13460	0.19	-2.6
3,069,898	+		DDA3937_RS13460	0.23	-0.5
3,069,898	+		DDA3937_RS13460	0.23	-2.9
3,070,069	-		DDA3937_RS13460	0.46	-1.9
3,070,071	+		DDA3937_RS13460	0.46	-2.1
3,070,071	+		DDA3937_RS13460	0.46	-3.9
3,070,071	+		DDA3937_RS13460	0.46	-2.6
3,070,072	-		DDA3937_RS13460	0.46	-1.3
3,070,072	-		DDA3937_RS13460	0.46	-2.6
3,070,072	-		DDA3937_RS13460	0.46	-0.5
3,070,072	-		DDA3937_RS13460	0.46	+1.1
3,070,072	-		DDA3937_RS13460	0.46	-3.3
3,070,156	-		DDA3937_RS13460	0.58	-1.3
3,070,167	+		DDA3937_RS13460	0.59	-2.3
3,070,168	-		DDA3937_RS13460	0.59	-1.5
3,070,179	+		DDA3937_RS13460	0.61	-3.4
3,070,180	-		DDA3937_RS13460	0.61	-1.9
3,070,180	-		DDA3937_RS13460	0.61	-1.5
3,070,181	+		DDA3937_RS13460	0.61	-1.3
3,070,181	+		DDA3937_RS13460	0.61	-2.6
3,070,181	+		DDA3937_RS13460	0.61	-4.2
3,070,182	-		DDA3937_RS13460	0.61	-4.4
3,070,182	-		DDA3937_RS13460	0.61	-0.5
3,070,182	-		DDA3937_RS13460	0.61	-2.9
3,070,182	-		DDA3937_RS13460	0.61	-2.1
3,070,182	-		DDA3937_RS13460	0.61	-3.2
3,070,182	-		DDA3937_RS13460	0.61	-2.4
3,070,182	-		DDA3937_RS13460	0.61	-2.6
3,070,260	-		DDA3937_RS13460	0.71	-1.3
3,070,260	-		DDA3937_RS13460	0.71	-1.5
3,070,260	-		DDA3937_RS13460	0.71	-4.2
3,070,303	+		DDA3937_RS13460	0.77	+0.1
3,070,304	-		DDA3937_RS13460	0.77	-2.1
3,070,304	-		DDA3937_RS13460	0.77	-2.1
3,070,304	-		DDA3937_RS13460	0.77	-2.9
3,070,304	-		DDA3937_RS13460	0.77	-3.7
3,070,304	-		DDA3937_RS13460	0.77	-2.8
3,070,315	-		DDA3937_RS13460	0.79	-1.9
3,070,315	-		DDA3937_RS13460	0.79	+0.5
3,070,315	-		DDA3937_RS13460	0.79	-1.8
3,070,405	-				-4.9
3,070,405	-				-2.9
3,070,405	-				-3.6
3,070,405	-				-2.4
3,070,460	+				-3.2
3,070,460	+				-2.1
3,070,460	+				-3.5
3,070,460	+				-5.8
3,070,460	+				+0.1
3,070,461	-				-1.8
3,070,461	-				-3.3
3,070,461	-				-2.8
3,070,461	-				-2.5
3,070,461	-				-1.5
3,070,461	-				-3.2
3,070,464	+				-3.6
3,070,495	+				-2.9
3,070,495	+				-1.3
3,070,496	-				-2.5
3,070,566	-				-3.2
3,070,566	-				-0.9
3,070,566	-				-3.9
3,070,570	-				-0.3
3,070,602	+				-4.7
3,070,609	-				-1.8
3,070,617	+				-2.6