Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07355

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
1,656,951	-		DDA3937_RS07350	0.44	-0.6
1,657,003	-		DDA3937_RS07350	0.47	-1.0
1,657,018	-		DDA3937_RS07350	0.48	-0.8
1,657,021	-		DDA3937_RS07350	0.48	+0.7
1,657,021	-		DDA3937_RS07350	0.48	+0.1
1,657,032	-		DDA3937_RS07350	0.49	-1.5
1,657,032	-		DDA3937_RS07350	0.49	+0.9
1,657,052	-		DDA3937_RS07350	0.50	-2.1
1,657,075	+		DDA3937_RS07350	0.51	-1.5
1,657,076	-		DDA3937_RS07350	0.51	-1.9
1,657,076	-		DDA3937_RS07350	0.51	-0.6
1,657,137	-		DDA3937_RS07350	0.55	-1.4
1,657,140	+		DDA3937_RS07350	0.55	+0.9
1,657,140	+		DDA3937_RS07350	0.55	+0.9
1,657,140	+		DDA3937_RS07350	0.55	-0.1
1,657,140	+		DDA3937_RS07350	0.55	-1.3
1,657,141	-		DDA3937_RS07350	0.55	+0.1
1,657,141	-		DDA3937_RS07350	0.55	-1.2
1,657,141	-		DDA3937_RS07350	0.55	-2.9
1,657,141	-		DDA3937_RS07350	0.55	+1.9
1,657,141	-		DDA3937_RS07350	0.55	+1.2
1,657,152	+		DDA3937_RS07350	0.55	-0.3
1,657,152	+		DDA3937_RS07350	0.55	-0.1
1,657,153	-		DDA3937_RS07350	0.56	-0.8
1,657,153	-		DDA3937_RS07350	0.56	+1.5
1,657,153	-		DDA3937_RS07350	0.56	-2.1
1,657,153	-		DDA3937_RS07350	0.56	+0.5
1,657,153	-		DDA3937_RS07350	0.56	-1.4
1,657,165	+		DDA3937_RS07350	0.56	-1.4
1,657,192	+		DDA3937_RS07350	0.58	-1.5
1,657,296	+		DDA3937_RS07350	0.64	+0.5
1,657,296	+		DDA3937_RS07350	0.64	-2.5
1,657,297	-		DDA3937_RS07350	0.64	+0.5
1,657,297	-		DDA3937_RS07350	0.64	-0.9
1,657,300	+		DDA3937_RS07350	0.64	-0.3
1,657,301	-				-0.6
1,657,315	+		DDA3937_RS07350	0.65	-0.8
1,657,315	+		DDA3937_RS07350	0.65	+0.8
1,657,316	-				-1.9
1,657,316	-				-2.4
1,657,316	-		DDA3937_RS07350	0.65	+0.2
1,657,328	+		DDA3937_RS07350	0.65	-1.8
1,657,328	+		DDA3937_RS07350	0.65	+0.9
1,657,328	+		DDA3937_RS07350	0.65	-0.8
1,657,329	-		DDA3937_RS07350	0.65	+2.4
1,657,329	-		DDA3937_RS07350	0.65	-0.2
1,657,331	+		DDA3937_RS07350	0.66	+0.7
1,657,331	+		DDA3937_RS07350	0.66	+4.6
1,657,331	+		DDA3937_RS07350	0.66	+1.6
1,657,332	-		DDA3937_RS07350	0.66	-0.7
1,657,332	-		DDA3937_RS07350	0.66	-0.6
1,657,332	-		DDA3937_RS07350	0.66	+0.5
1,657,405	-		DDA3937_RS07350	0.70	+0.7
1,657,492	+		DDA3937_RS07350	0.75	+2.9
1,657,495	+		DDA3937_RS07350	0.75	-0.6
1,657,495	+		DDA3937_RS07350	0.75	-1.6
1,657,507	+		DDA3937_RS07350	0.75	-0.3
1,657,509	+		DDA3937_RS07350	0.76	+1.2
1,657,510	-		DDA3937_RS07350	0.76	-2.4
1,657,582	+		DDA3937_RS07350	0.80	+0.2
1,657,582	+		DDA3937_RS07350	0.80	+0.3
1,657,583	-		DDA3937_RS07350	0.80	+1.0
1,657,583	-		DDA3937_RS07350	0.80	-2.1
1,657,583	-		DDA3937_RS07350	0.80	-0.1
1,657,636	-		DDA3937_RS07350	0.83	-0.4
1,657,636	-		DDA3937_RS07350	0.83	-1.8
1,657,638	+		DDA3937_RS07350	0.83	-0.2
1,657,638	+		DDA3937_RS07350	0.83	-0.3
1,657,638	+		DDA3937_RS07350	0.83	+1.0
1,657,638	+		DDA3937_RS07350	0.83	-0.8
1,657,638	+		DDA3937_RS07350	0.83	+1.0
1,657,638	+		DDA3937_RS07350	0.83	-1.1
1,657,638	+		DDA3937_RS07350	0.83	-2.6
1,657,638	+		DDA3937_RS07350	0.83	+2.8
1,657,639	-				-1.4
1,657,639	-		DDA3937_RS07350	0.83	+1.5
1,657,655	+		DDA3937_RS07350	0.84	-1.6
1,657,656	-				+0.5
1,657,656	-		DDA3937_RS07350	0.84	+0.2
1,657,656	-		DDA3937_RS07350	0.84	+0.0
1,657,675	+		DDA3937_RS07350	0.85	+2.8
1,657,684	+		DDA3937_RS07350	0.85	-0.9
1,657,684	+		DDA3937_RS07350	0.85	+1.1
1,657,689	+		DDA3937_RS07350	0.86	+1.2
1,657,689	+		DDA3937_RS07350	0.86	+1.2
1,657,855	+				-1.3
1,657,855	+				-0.7
1,657,890	-				-0.8
1,657,905	+				+0.4
1,657,905	+				-1.4
1,657,906	-				-1.1
1,657,932	-				-1.7
1,658,020	+				-2.0
1,658,021	-				-2.3
1,658,071	+		DDA3937_RS07355	0.15	+0.3
1,658,078	+		DDA3937_RS07355	0.16	+0.7
1,658,079	-		DDA3937_RS07355	0.16	-0.5
1,658,079	-		DDA3937_RS07355	0.16	+0.1
1,658,114	-		DDA3937_RS07355	0.20	-0.7
1,658,114	-		DDA3937_RS07355	0.20	-0.8
1,658,129	-		DDA3937_RS07355	0.22	-1.1
1,658,184	-		DDA3937_RS07355	0.28	-1.1
1,658,320	+		DDA3937_RS07355	0.44	+1.0
1,658,376	+		DDA3937_RS07355	0.51	-1.9
1,658,376	+		DDA3937_RS07355	0.51	+0.7
1,658,376	+				-2.5
1,658,377	-		DDA3937_RS07355	0.51	-1.7
1,658,380	+		DDA3937_RS07355	0.51	-0.3
1,658,380	+		DDA3937_RS07355	0.51	-1.7
1,658,381	-		DDA3937_RS07355	0.51	+0.8
1,658,385	+		DDA3937_RS07355	0.52	-0.3
1,658,386	-				+0.9
1,658,443	+		DDA3937_RS07355	0.59	-1.5
1,658,443	+		DDA3937_RS07355	0.59	+2.5
1,658,451	+		DDA3937_RS07355	0.60	+1.1
1,658,457	+		DDA3937_RS07355	0.60	-0.1
1,658,457	+		DDA3937_RS07355	0.60	-1.2
1,658,525	-		DDA3937_RS07355	0.68	-1.7
1,658,571	-		DDA3937_RS07355	0.74	-2.7
1,658,583	+				-1.4
1,658,609	-		DDA3937_RS07355	0.78	-1.0
1,658,671	+		DDA3937_RS07355	0.85	-1.6
1,658,671	+		DDA3937_RS07355	0.85	-2.2
1,658,672	-		DDA3937_RS07355	0.85	-1.4
1,658,672	-		DDA3937_RS07355	0.85	-0.1
1,658,676	+		DDA3937_RS07355	0.86	+0.4
1,658,677	-		DDA3937_RS07355	0.86	-0.1
1,658,681	-		DDA3937_RS07355	0.86	+0.3
1,658,697	+				-1.1
1,658,698	-		DDA3937_RS07355	0.88	-0.4
1,658,698	-		DDA3937_RS07355	0.88	+0.2
1,658,698	-		DDA3937_RS07355	0.88	-1.4
1,658,701	+		DDA3937_RS07355	0.89	-3.3
1,658,813	-				-1.4
1,658,993	+		DDA3937_RS07360	0.14	+0.1
1,658,996	+		DDA3937_RS07360	0.14	-1.9
1,658,997	-				-1.1
1,659,124	-		DDA3937_RS07360	0.23	+0.6
1,659,124	-		DDA3937_RS07360	0.23	-1.2
1,659,227	-		DDA3937_RS07360	0.29	+0.7
1,659,373	+		DDA3937_RS07360	0.39	-0.4
1,659,416	-		DDA3937_RS07360	0.42	-3.3
1,659,473	-		DDA3937_RS07360	0.45	+0.1
1,659,488	+		DDA3937_RS07360	0.46	-0.9
1,659,491	-		DDA3937_RS07360	0.46	-1.7
1,659,525	+		DDA3937_RS07360	0.49	-1.7
1,659,572	+		DDA3937_RS07360	0.52	+1.2
1,659,745	+		DDA3937_RS07360	0.63	+0.6
1,659,780	-		DDA3937_RS07360	0.65	-3.0