Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02490 and DDA3937_RS02495 are separated by 27 nucleotides DDA3937_RS02495 and DDA3937_RS02500 are separated by 250 nucleotides DDA3937_RS02500 and DDA3937_RS02505 are separated by 47 nucleotides DDA3937_RS02505 and DDA3937_RS02510 overlap by 4 nucleotides
DDA3937_RS02490: DDA3937_RS02490 - amidohydrolase, at 551,949 to 553,118
_RS02490
DDA3937_RS02495: DDA3937_RS02495 - hypothetical protein, at 553,146 to 553,388
_RS02495
DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454
_RS02500
DDA3937_RS02505: DDA3937_RS02505 - ABC transporter substrate-binding protein, at 554,502 to 555,443
_RS02505
DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438
_RS02510
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.946 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.972 kb on + strand, within DDA3937_RS02490 at 552.973 kb on - strand, within DDA3937_RS02490 at 553.037 kb on + strand at 553.049 kb on + strand at 553.128 kb on + strand at 553.128 kb on + strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.148 kb on - strand at 553.157 kb on + strand at 553.158 kb on - strand at 553.217 kb on + strand, within DDA3937_RS02495 at 553.415 kb on - strand at 553.415 kb on - strand at 553.467 kb on + strand at 553.468 kb on - strand at 553.468 kb on - strand at 553.473 kb on - strand at 553.516 kb on - strand at 553.516 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.670 kb on + strand at 553.671 kb on - strand at 553.693 kb on + strand at 553.694 kb on - strand at 553.694 kb on - strand at 553.719 kb on + strand at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 554.046 kb on - strand, within DDA3937_RS02500 at 554.226 kb on - strand, within DDA3937_RS02500 at 554.228 kb on + strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.338 kb on + strand, within DDA3937_RS02500 at 554.339 kb on - strand, within DDA3937_RS02500 at 554.436 kb on + strand at 554.436 kb on + strand at 554.437 kb on - strand at 554.450 kb on + strand at 554.479 kb on + strand at 554.479 kb on + strand at 554.700 kb on + strand, within DDA3937_RS02505 at 554.761 kb on - strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.884 kb on + strand, within DDA3937_RS02505 at 554.949 kb on + strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.085 kb on - strand, within DDA3937_RS02505 at 555.101 kb on + strand, within DDA3937_RS02505 at 555.123 kb on + strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.346 kb on - strand, within DDA3937_RS02505 at 555.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 552,763 - DDA3937_RS02490 0.70 -0.3 552,763 - DDA3937_RS02490 0.70 -1.7 552,946 - DDA3937_RS02490 0.85 +0.3 552,953 - DDA3937_RS02490 0.86 -0.6 552,953 - DDA3937_RS02490 0.86 +0.6 552,972 + DDA3937_RS02490 0.87 +0.5 552,973 - DDA3937_RS02490 0.88 -0.8 553,037 + -1.7 553,049 + +1.4 553,128 + -0.2 553,128 + -0.5 553,129 - -2.1 553,129 - -0.1 553,129 - -1.2 553,129 - -0.4 553,129 - -1.1 553,148 - -0.3 553,157 + +1.0 553,158 - -1.0 553,217 + DDA3937_RS02495 0.29 +0.1 553,415 - -0.4 553,415 - -2.2 553,467 + -0.6 553,468 - +0.3 553,468 - -0.5 553,473 - -0.5 553,516 - +0.2 553,516 - +0.7 553,525 - +0.3 553,525 - +0.4 553,525 - -3.0 553,525 - +2.9 553,670 + -2.1 553,671 - -0.8 553,693 + +0.0 553,694 - -1.1 553,694 - +0.3 553,719 + -0.6 553,945 + DDA3937_RS02500 0.38 +0.4 553,945 + DDA3937_RS02500 0.38 -0.2 553,945 + DDA3937_RS02500 0.38 -0.6 553,945 + DDA3937_RS02500 0.38 -1.1 553,946 - DDA3937_RS02500 0.38 +3.4 553,946 - DDA3937_RS02500 0.38 -2.1 553,946 - DDA3937_RS02500 0.38 -1.1 553,946 - DDA3937_RS02500 0.38 -0.7 553,946 - DDA3937_RS02500 0.38 -0.7 553,946 - DDA3937_RS02500 0.38 +0.4 553,946 - DDA3937_RS02500 0.38 +0.1 554,046 - DDA3937_RS02500 0.50 -1.9 554,226 - DDA3937_RS02500 0.72 +0.6 554,228 + DDA3937_RS02500 0.72 -1.6 554,229 - DDA3937_RS02500 0.72 -2.4 554,229 - DDA3937_RS02500 0.72 +1.4 554,229 - DDA3937_RS02500 0.72 -0.1 554,229 - DDA3937_RS02500 0.72 -1.7 554,334 + DDA3937_RS02500 0.85 -2.4 554,334 + DDA3937_RS02500 0.85 -0.2 554,334 + DDA3937_RS02500 0.85 +1.5 554,334 + DDA3937_RS02500 0.85 +0.7 554,334 + DDA3937_RS02500 0.85 -2.6 554,335 - DDA3937_RS02500 0.85 +1.5 554,335 - DDA3937_RS02500 0.85 -0.7 554,335 - DDA3937_RS02500 0.85 +0.0 554,335 - DDA3937_RS02500 0.85 +0.3 554,335 - DDA3937_RS02500 0.85 -0.4 554,335 - DDA3937_RS02500 0.85 -1.8 554,335 - DDA3937_RS02500 0.85 +0.0 554,335 - DDA3937_RS02500 0.85 +0.5 554,335 - DDA3937_RS02500 0.85 +2.6 554,335 - DDA3937_RS02500 0.85 +2.9 554,338 + DDA3937_RS02500 0.86 +2.0 554,339 - DDA3937_RS02500 0.86 +1.3 554,436 + +0.1 554,436 + -0.1 554,437 - +1.5 554,450 + -0.1 554,479 + -1.3 554,479 + -1.1 554,700 + DDA3937_RS02505 0.21 +1.0 554,761 - DDA3937_RS02505 0.27 +0.5 554,820 + DDA3937_RS02505 0.34 -0.5 554,820 + DDA3937_RS02505 0.34 -0.3 554,821 - DDA3937_RS02505 0.34 -2.1 554,821 - DDA3937_RS02505 0.34 -1.0 554,821 - DDA3937_RS02505 0.34 -1.8 554,884 + DDA3937_RS02505 0.41 -2.9 554,949 + DDA3937_RS02505 0.47 +0.9 555,045 - DDA3937_RS02505 0.58 +0.5 555,045 - DDA3937_RS02505 0.58 -1.2 555,076 + DDA3937_RS02505 0.61 -0.9 555,076 + DDA3937_RS02505 0.61 +1.0 555,076 + DDA3937_RS02505 0.61 -3.1 555,085 - DDA3937_RS02505 0.62 -3.1 555,101 + DDA3937_RS02505 0.64 -0.4 555,123 + DDA3937_RS02505 0.66 -1.3 555,124 - DDA3937_RS02505 0.66 +0.8 555,124 - DDA3937_RS02505 0.66 -0.3 555,346 - DDA3937_RS02505 0.90 -0.2 555,360 + -0.5
Or see this region's nucleotide sequence