Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04350 and DDA3937_RS04355 are separated by 373 nucleotides DDA3937_RS04355 and DDA3937_RS04360 are separated by 504 nucleotides DDA3937_RS04360 and DDA3937_RS04365 overlap by 4 nucleotides
DDA3937_RS04350: DDA3937_RS04350 - transaldolase, at 955,401 to 956,351
_RS04350
DDA3937_RS04355: DDA3937_RS04355 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 956,725 to 959,004
_RS04355
DDA3937_RS04360: DDA3937_RS04360 - YaiI/YqxD family protein, at 959,509 to 959,958
_RS04360
DDA3937_RS04365: DDA3937_RS04365 - oxygen-dependent coproporphyrinogen oxidase, at 959,955 to 960,893
_RS04365
Position (kb) 956
957
958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 955.726 kb on + strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.730 kb on + strand, within DDA3937_RS04350 at 955.798 kb on + strand, within DDA3937_RS04350 at 955.807 kb on + strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand at 956.000 kb on - strand, within DDA3937_RS04350 at 956.024 kb on + strand at 956.313 kb on + strand at 956.340 kb on + strand at 956.340 kb on + strand at 956.340 kb on + strand at 956.341 kb on - strand at 956.341 kb on - strand at 956.341 kb on - strand at 956.436 kb on + strand at 956.462 kb on + strand at 956.473 kb on - strand at 956.478 kb on + strand at 956.479 kb on - strand at 956.479 kb on - strand at 956.539 kb on + strand at 956.539 kb on + strand at 956.540 kb on - strand at 956.572 kb on + strand at 956.597 kb on + strand at 956.598 kb on - strand at 956.605 kb on + strand at 956.605 kb on + strand at 956.605 kb on + strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.610 kb on + strand at 956.610 kb on + strand at 956.611 kb on - strand at 956.618 kb on - strand at 956.637 kb on - strand at 956.637 kb on - strand at 956.670 kb on + strand at 956.716 kb on + strand at 956.716 kb on + strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.719 kb on + strand at 956.719 kb on + strand at 956.720 kb on - strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.725 kb on - strand at 956.725 kb on - strand at 956.725 kb on - strand at 956.767 kb on + strand at 956.840 kb on - strand at 956.896 kb on + strand at 956.897 kb on - strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.903 kb on - strand at 956.903 kb on - strand at 956.903 kb on - strand at 956.904 kb on + strand at 956.905 kb on - strand at 956.905 kb on - strand at 957.135 kb on + strand, within DDA3937_RS04355 at 957.135 kb on + strand, within DDA3937_RS04355 at 957.135 kb on + strand, within DDA3937_RS04355 at 957.136 kb on - strand, within DDA3937_RS04355 at 957.157 kb on + strand, within DDA3937_RS04355 at 957.157 kb on + strand, within DDA3937_RS04355 at 957.400 kb on + strand, within DDA3937_RS04355 at 957.400 kb on + strand, within DDA3937_RS04355 at 957.400 kb on + strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.442 kb on + strand, within DDA3937_RS04355 at 957.442 kb on + strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.686 kb on + strand, within DDA3937_RS04355 at 957.686 kb on + strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.857 kb on - strand, within DDA3937_RS04355 at 957.970 kb on + strand, within DDA3937_RS04355 at 957.970 kb on + strand, within DDA3937_RS04355 at 957.970 kb on + strand, within DDA3937_RS04355 at 957.971 kb on - strand, within DDA3937_RS04355 at 957.971 kb on - strand, within DDA3937_RS04355 at 957.999 kb on + strand, within DDA3937_RS04355 at 958.000 kb on - strand, within DDA3937_RS04355 at 958.253 kb on - strand, within DDA3937_RS04355 at 958.264 kb on + strand, within DDA3937_RS04355 at 958.265 kb on - strand, within DDA3937_RS04355 at 958.350 kb on + strand, within DDA3937_RS04355 at 958.398 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.843 kb on + strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.917 kb on - strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.003 kb on - strand at 959.003 kb on - strand at 959.059 kb on - strand at 959.059 kb on - strand at 959.077 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.452 kb on + strand at 959.597 kb on - strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.655 kb on + strand, within DDA3937_RS04360 at 959.656 kb on - strand, within DDA3937_RS04360 at 959.666 kb on + strand, within DDA3937_RS04360 at 959.788 kb on + strand, within DDA3937_RS04360 at 959.789 kb on - strand, within DDA3937_RS04360 at 959.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 955,726 + DDA3937_RS04350 0.34 +1.5 955,727 - DDA3937_RS04350 0.34 -0.8 955,727 - DDA3937_RS04350 0.34 -0.2 955,727 - DDA3937_RS04350 0.34 -2.2 955,727 - DDA3937_RS04350 0.34 +0.4 955,727 - DDA3937_RS04350 0.34 -0.2 955,730 + DDA3937_RS04350 0.35 +0.9 955,798 + DDA3937_RS04350 0.42 +0.6 955,807 + DDA3937_RS04350 0.43 +2.2 955,808 - DDA3937_RS04350 0.43 -0.6 955,808 - DDA3937_RS04350 0.43 -0.1 955,837 + DDA3937_RS04350 0.46 -0.2 955,837 + DDA3937_RS04350 0.46 -1.8 955,983 + DDA3937_RS04350 0.61 -0.7 955,983 + DDA3937_RS04350 0.61 +1.3 955,983 + DDA3937_RS04350 0.61 -0.9 955,983 + DDA3937_RS04350 0.61 +0.0 955,983 + DDA3937_RS04350 0.61 +0.5 955,983 + DDA3937_RS04350 0.61 -0.7 955,984 - DDA3937_RS04350 0.61 -0.4 955,984 - DDA3937_RS04350 0.61 +0.3 956,000 - DDA3937_RS04350 0.63 +0.1 956,000 - +0.5 956,000 - DDA3937_RS04350 0.63 -0.8 956,024 + -0.2 956,313 + -2.1 956,340 + -0.6 956,340 + -0.1 956,340 + -0.0 956,341 - +1.6 956,341 - +0.4 956,341 - +1.9 956,436 + -1.9 956,462 + +0.4 956,473 - -0.9 956,478 + -1.1 956,479 - -0.4 956,479 - -0.4 956,539 + -2.1 956,539 + +0.6 956,540 - +0.4 956,572 + +0.3 956,597 + -0.0 956,598 - -0.3 956,605 + -2.1 956,605 + -0.0 956,605 + -2.4 956,606 - -0.4 956,606 - -0.1 956,606 - +0.8 956,606 - +0.2 956,606 - +2.0 956,606 - -0.8 956,607 + -1.0 956,607 + +0.1 956,607 + -0.9 956,607 + +0.6 956,607 + +0.9 956,607 + +1.0 956,608 - -0.4 956,608 - -2.7 956,608 - -0.4 956,608 - -0.2 956,610 + -1.0 956,610 + -2.1 956,611 - -0.5 956,618 - -0.2 956,637 - -1.3 956,637 - -0.3 956,670 + -0.8 956,716 + +0.5 956,716 + -0.6 956,717 - +1.0 956,717 - +1.8 956,717 - -1.2 956,719 + +0.1 956,719 + -1.0 956,720 - -0.2 956,724 + +0.0 956,724 + -2.2 956,724 + -0.7 956,724 + -0.4 956,725 - -0.3 956,725 - -0.8 956,725 - +1.1 956,767 + -0.9 956,840 - -0.7 956,896 + +0.7 956,897 - -0.7 956,902 + +0.1 956,902 + -0.8 956,902 + -1.5 956,902 + +1.0 956,903 - +1.1 956,903 - +0.3 956,903 - -0.4 956,904 + +0.2 956,905 - -1.2 956,905 - +0.6 957,135 + DDA3937_RS04355 0.18 +3.1 957,135 + DDA3937_RS04355 0.18 -0.9 957,135 + DDA3937_RS04355 0.18 -1.9 957,136 - DDA3937_RS04355 0.18 +0.1 957,157 + DDA3937_RS04355 0.19 -2.8 957,157 + DDA3937_RS04355 0.19 -1.5 957,400 + DDA3937_RS04355 0.30 +0.4 957,400 + DDA3937_RS04355 0.30 -0.1 957,400 + DDA3937_RS04355 0.30 +1.1 957,401 - DDA3937_RS04355 0.30 +0.8 957,401 - DDA3937_RS04355 0.30 -0.3 957,401 - DDA3937_RS04355 0.30 -2.9 957,401 - DDA3937_RS04355 0.30 -0.5 957,442 + DDA3937_RS04355 0.31 +0.9 957,442 + DDA3937_RS04355 0.31 -1.4 957,443 - DDA3937_RS04355 0.31 -0.5 957,443 - DDA3937_RS04355 0.31 +4.3 957,443 - DDA3937_RS04355 0.31 +1.7 957,443 - DDA3937_RS04355 0.31 +0.1 957,686 + DDA3937_RS04355 0.42 +0.3 957,686 + DDA3937_RS04355 0.42 -2.1 957,687 - DDA3937_RS04355 0.42 -1.1 957,687 - DDA3937_RS04355 0.42 +0.7 957,687 - DDA3937_RS04355 0.42 -1.5 957,687 - DDA3937_RS04355 0.42 +0.4 957,687 - DDA3937_RS04355 0.42 -0.5 957,857 - DDA3937_RS04355 0.50 -0.7 957,970 + DDA3937_RS04355 0.55 +0.5 957,970 + DDA3937_RS04355 0.55 +2.1 957,970 + DDA3937_RS04355 0.55 +0.8 957,971 - DDA3937_RS04355 0.55 +1.0 957,971 - DDA3937_RS04355 0.55 +0.7 957,999 + DDA3937_RS04355 0.56 +0.4 958,000 - DDA3937_RS04355 0.56 -1.7 958,253 - DDA3937_RS04355 0.67 -1.9 958,264 + DDA3937_RS04355 0.68 +0.9 958,265 - DDA3937_RS04355 0.68 -0.6 958,350 + DDA3937_RS04355 0.71 -3.2 958,398 + DDA3937_RS04355 0.73 -0.4 958,402 + DDA3937_RS04355 0.74 -1.2 958,402 + DDA3937_RS04355 0.74 -0.7 958,402 + DDA3937_RS04355 0.74 +1.1 958,402 + DDA3937_RS04355 0.74 +0.3 958,402 + DDA3937_RS04355 0.74 -0.1 958,403 - DDA3937_RS04355 0.74 -0.9 958,403 - DDA3937_RS04355 0.74 +1.7 958,403 - DDA3937_RS04355 0.74 -1.1 958,403 - DDA3937_RS04355 0.74 -1.9 958,403 - DDA3937_RS04355 0.74 +3.3 958,403 - DDA3937_RS04355 0.74 -1.7 958,519 + DDA3937_RS04355 0.79 -1.7 958,519 + DDA3937_RS04355 0.79 +0.1 958,519 + DDA3937_RS04355 0.79 -0.1 958,520 - DDA3937_RS04355 0.79 -0.4 958,520 - DDA3937_RS04355 0.79 -0.5 958,520 - DDA3937_RS04355 0.79 +1.8 958,520 - DDA3937_RS04355 0.79 -0.4 958,520 - DDA3937_RS04355 0.79 -1.2 958,520 - DDA3937_RS04355 0.79 +0.3 958,520 - DDA3937_RS04355 0.79 +0.2 958,843 + +1.0 958,844 - -1.7 958,844 - +0.1 958,844 - -0.9 958,917 - +1.5 959,002 + -0.9 959,002 + -0.9 959,002 + +0.0 959,003 - +0.1 959,003 - +0.1 959,059 - -0.0 959,059 - +1.5 959,077 - +0.9 959,079 - -1.4 959,079 - -0.1 959,079 - +0.3 959,079 - -0.6 959,079 - +0.8 959,452 + +0.0 959,597 - DDA3937_RS04360 0.20 +0.1 959,616 + DDA3937_RS04360 0.24 +0.5 959,616 + DDA3937_RS04360 0.24 +0.5 959,617 - DDA3937_RS04360 0.24 -1.7 959,617 - DDA3937_RS04360 0.24 -0.4 959,655 + DDA3937_RS04360 0.32 +2.1 959,656 - DDA3937_RS04360 0.33 +2.1 959,666 + DDA3937_RS04360 0.35 -1.2 959,788 + DDA3937_RS04360 0.62 +0.0 959,789 - DDA3937_RS04360 0.62 -1.4 959,979 - -0.1
Or see this region's nucleotide sequence