Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19355

Experiment: Stem-Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stem-Norland
4,400,843	+		DDA3937_RS19345	0.80	-1.0
4,400,843	+				-0.3
4,400,844	-		DDA3937_RS19345	0.80	+2.6
4,400,844	-		DDA3937_RS19345	0.80	-1.2
4,400,868	-		DDA3937_RS19345	0.81	-0.3
4,400,931	+		DDA3937_RS19345	0.85	+0.3
4,400,931	+		DDA3937_RS19345	0.85	-0.9
4,400,932	-		DDA3937_RS19345	0.85	+1.0
4,400,949	+		DDA3937_RS19345	0.86	-1.4
4,401,110	+				+0.5
4,401,110	+				+0.2
4,401,110	+				-1.1
4,401,111	-				-1.3
4,401,111	-				-0.7
4,401,129	+				-0.7
4,401,130	-				-1.7
4,401,146	+				+0.5
4,401,199	+				-0.0
4,401,199	+				-0.2
4,401,199	+				-2.8
4,401,199	+				-4.2
4,401,199	+				+0.0
4,401,199	+				+2.6
4,401,200	-				+0.1
4,401,200	-				+0.1
4,401,200	-				+0.6
4,401,200	-				-0.3
4,401,200	-				-2.2
4,401,200	-				-2.8
4,401,200	-				-1.0
4,401,207	+				-2.5
4,401,219	+				+0.2
4,401,220	-				-0.3
4,401,245	+		DDA3937_RS19350	0.11	-1.3
4,401,245	+		DDA3937_RS19350	0.11	-1.1
4,401,245	+		DDA3937_RS19350	0.11	-1.0
4,401,245	+		DDA3937_RS19350	0.11	-0.4
4,401,245	+		DDA3937_RS19350	0.11	-0.1
4,401,246	-		DDA3937_RS19350	0.11	-3.0
4,401,246	-		DDA3937_RS19350	0.11	+2.2
4,401,246	-		DDA3937_RS19350	0.11	+1.7
4,401,246	-		DDA3937_RS19350	0.11	+1.2
4,401,246	-		DDA3937_RS19350	0.11	-1.0
4,401,246	-		DDA3937_RS19350	0.11	-0.4
4,401,246	-		DDA3937_RS19350	0.11	-1.0
4,401,306	-		DDA3937_RS19350	0.20	-1.9
4,401,306	-		DDA3937_RS19350	0.20	-1.0
4,401,360	+		DDA3937_RS19350	0.28	+0.6
4,401,464	+		DDA3937_RS19350	0.43	-1.3
4,401,464	+		DDA3937_RS19350	0.43	-2.1
4,401,464	+		DDA3937_RS19350	0.43	-2.3
4,401,464	+		DDA3937_RS19350	0.43	+2.6
4,401,464	+		DDA3937_RS19350	0.43	+1.6
4,401,465	-		DDA3937_RS19350	0.44	+1.0
4,401,465	-		DDA3937_RS19350	0.44	-0.9
4,401,465	-		DDA3937_RS19350	0.44	+0.0
4,401,465	-		DDA3937_RS19350	0.44	-2.6
4,401,465	-		DDA3937_RS19350	0.44	-0.9
4,401,465	-		DDA3937_RS19350	0.44	-3.1
4,401,465	-		DDA3937_RS19350	0.44	+0.4
4,401,465	-		DDA3937_RS19350	0.44	-2.9
4,401,465	-		DDA3937_RS19350	0.44	-0.3
4,401,471	+		DDA3937_RS19350	0.45	-0.5
4,401,472	-		DDA3937_RS19350	0.45	-2.4
4,401,472	-		DDA3937_RS19350	0.45	-0.6
4,401,607	+		DDA3937_RS19350	0.65	+3.0
4,401,608	-		DDA3937_RS19350	0.65	-1.2
4,401,678	+		DDA3937_RS19350	0.75	-0.1
4,401,678	+		DDA3937_RS19350	0.75	+1.3
4,401,678	+		DDA3937_RS19350	0.75	-2.9
4,401,679	-		DDA3937_RS19350	0.76	+0.7
4,401,679	-		DDA3937_RS19350	0.76	-1.9
4,401,679	-		DDA3937_RS19350	0.76	-0.5
4,401,679	-		DDA3937_RS19350	0.76	-0.9
4,401,708	-		DDA3937_RS19350	0.80	-2.7
4,401,708	-		DDA3937_RS19350	0.80	-0.4
4,401,751	+		DDA3937_RS19350	0.86	-0.1
4,401,752	-		DDA3937_RS19350	0.87	-2.7
4,401,790	+				-0.7
4,401,790	+				-0.7
4,401,791	-				-1.7
4,401,813	-				-3.0
4,401,813	-				-2.9
4,401,870	+				-0.4
4,401,870	+				+1.1
4,401,871	-				-2.8
4,401,912	+				+1.5
4,401,913	-				-0.3
4,401,933	+				-0.8
4,401,934	-				-2.5
4,402,039	+		DDA3937_RS19355	0.18	-2.3
4,402,039	+		DDA3937_RS19355	0.18	+2.9
4,402,040	-		DDA3937_RS19355	0.18	+1.3
4,402,040	-		DDA3937_RS19355	0.18	-3.9
4,402,140	+		DDA3937_RS19355	0.27	-2.5
4,402,158	-		DDA3937_RS19355	0.28	+0.8
4,402,251	+		DDA3937_RS19355	0.37	-0.9
4,402,252	-		DDA3937_RS19355	0.37	-0.3
4,402,340	+		DDA3937_RS19355	0.45	-1.0
4,402,340	+		DDA3937_RS19355	0.45	-0.5
4,402,371	+				-1.3
4,402,413	+		DDA3937_RS19355	0.51	+2.8
4,402,414	-		DDA3937_RS19355	0.51	+0.2
4,402,474	+		DDA3937_RS19355	0.56	+0.3
4,402,474	+		DDA3937_RS19355	0.56	+0.9
4,402,475	-		DDA3937_RS19355	0.56	+0.2
4,402,544	+		DDA3937_RS19355	0.63	-0.7
4,402,544	+		DDA3937_RS19355	0.63	-1.1
4,402,544	+		DDA3937_RS19355	0.63	-0.2
4,402,544	+		DDA3937_RS19355	0.63	-1.0
4,402,544	+		DDA3937_RS19355	0.63	+3.4
4,402,544	+		DDA3937_RS19355	0.63	+1.1
4,402,544	+		DDA3937_RS19355	0.63	-0.5
4,402,544	+		DDA3937_RS19355	0.63	-4.1
4,402,544	+		DDA3937_RS19355	0.63	+0.8
4,402,544	+		DDA3937_RS19355	0.63	-1.3
4,402,544	+		DDA3937_RS19355	0.63	-2.2
4,402,545	-		DDA3937_RS19355	0.63	-0.5
4,402,545	-		DDA3937_RS19355	0.63	+1.3
4,402,545	-		DDA3937_RS19355	0.63	+2.5
4,402,545	-		DDA3937_RS19355	0.63	-2.4
4,402,545	-		DDA3937_RS19355	0.63	+0.6
4,402,545	-		DDA3937_RS19355	0.63	-2.0
4,402,545	-		DDA3937_RS19355	0.63	-1.0
4,402,545	-		DDA3937_RS19355	0.63	+0.3
4,402,545	-		DDA3937_RS19355	0.63	-3.9
4,402,545	-		DDA3937_RS19355	0.63	-1.3
4,402,545	-		DDA3937_RS19355	0.63	-0.4
4,402,610	+		DDA3937_RS19355	0.68	+0.1
4,402,610	+		DDA3937_RS19355	0.68	-1.0
4,402,610	+		DDA3937_RS19355	0.68	-1.0
4,402,610	+		DDA3937_RS19355	0.68	-0.2
4,402,610	+		DDA3937_RS19355	0.68	+2.6
4,402,610	+		DDA3937_RS19355	0.68	-1.5
4,402,610	+		DDA3937_RS19355	0.68	+1.6
4,402,613	+		DDA3937_RS19355	0.69	-2.7
4,402,614	-		DDA3937_RS19355	0.69	+2.2
4,402,614	-		DDA3937_RS19355	0.69	-2.9
4,402,614	-		DDA3937_RS19355	0.69	+0.8
4,402,614	-		DDA3937_RS19355	0.69	+0.7
4,402,674	+		DDA3937_RS19355	0.74	-3.7
4,402,674	+		DDA3937_RS19355	0.74	-0.7
4,402,674	+		DDA3937_RS19355	0.74	-2.1
4,402,675	-		DDA3937_RS19355	0.74	-1.7
4,402,784	+		DDA3937_RS19355	0.84	-0.3
4,402,784	+		DDA3937_RS19355	0.84	+1.8
4,402,785	-		DDA3937_RS19355	0.84	+2.4
4,402,785	-		DDA3937_RS19355	0.84	+1.3
4,402,785	-		DDA3937_RS19355	0.84	+0.6
4,402,929	+				-1.9
4,402,929	+				+3.4
4,402,929	+				+0.2
4,402,930	-				-1.6
4,402,930	-				+0.8
4,402,945	+				-0.2
4,402,987	-				+0.4
4,402,987	-				-3.3
4,403,001	+				+0.3
4,403,001	+				-0.8
4,403,001	+				+1.3
4,403,002	-				+0.2
4,403,002	-				-2.1
4,403,008	+				+0.1
4,403,008	+				-1.7
4,403,008	+				+1.3
4,403,008	+				-0.5
4,403,008	+				-0.2
4,403,008	+				+1.4
4,403,008	+				-2.7
4,403,009	-				-0.0
4,403,009	-				+0.0
4,403,009	-				+0.1
4,403,009	-				-1.3
4,403,009	-				-0.9
4,403,009	-				-1.3
4,403,009	-				+1.6
4,403,009	-				+0.0
4,403,009	-				+0.5
4,403,009	-				-1.3
4,403,009	-				-2.5
4,403,009	-				+0.1
4,403,010	+				+0.3
4,403,011	-				-1.4
4,403,011	-				-0.4
4,403,011	-				+0.8
4,403,011	-				-0.1
4,403,011	-				+0.4
4,403,024	+				+0.2
4,403,024	+				-1.7
4,403,024	+				+0.9
4,403,024	+				-2.3
4,403,024	+				+2.6
4,403,025	-				-1.7
4,403,025	-				-1.5
4,403,349	+		DDA3937_RS19360	0.27	+0.2
4,403,350	-		DDA3937_RS19360	0.27	-0.0
4,403,389	+		DDA3937_RS19360	0.32	-2.0
4,403,389	+		DDA3937_RS19360	0.32	+0.0
4,403,390	-		DDA3937_RS19360	0.32	+2.4
4,403,390	-		DDA3937_RS19360	0.32	-2.7
4,403,390	-		DDA3937_RS19360	0.32	-2.3
4,403,390	-		DDA3937_RS19360	0.32	-0.7
4,403,390	-		DDA3937_RS19360	0.32	-2.0
4,403,396	+		DDA3937_RS19360	0.33	-2.1
4,403,423	+		DDA3937_RS19360	0.36	-0.4
4,403,424	-		DDA3937_RS19360	0.36	-1.3
4,403,424	-		DDA3937_RS19360	0.36	-1.7
4,403,431	+		DDA3937_RS19360	0.37	+0.3
4,403,431	+		DDA3937_RS19360	0.37	-2.2
4,403,431	+		DDA3937_RS19360	0.37	-1.3
4,403,431	+		DDA3937_RS19360	0.37	-1.8
4,403,431	+		DDA3937_RS19360	0.37	+3.3
4,403,431	+		DDA3937_RS19360	0.37	-2.3
4,403,432	-		DDA3937_RS19360	0.37	-1.2
4,403,432	-		DDA3937_RS19360	0.37	-2.5
4,403,432	-		DDA3937_RS19360	0.37	-2.3
4,403,432	-		DDA3937_RS19360	0.37	+1.9
4,403,432	-		DDA3937_RS19360	0.37	+0.5
4,403,487	+		DDA3937_RS19360	0.43	-1.3
4,403,487	+		DDA3937_RS19360	0.43	-3.5
4,403,494	+		DDA3937_RS19360	0.44	-2.4
4,403,494	+		DDA3937_RS19360	0.44	-1.4
4,403,495	-		DDA3937_RS19360	0.44	-0.0
4,403,495	-		DDA3937_RS19360	0.44	-1.5
4,403,767	+		DDA3937_RS19360	0.76	-0.7