Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19280 and DDA3937_RS19285 are separated by 10 nucleotides DDA3937_RS19285 and DDA3937_RS19290 are separated by 32 nucleotides DDA3937_RS19290 and DDA3937_RS19295 are separated by 295 nucleotides DDA3937_RS19295 and DDA3937_RS19300 are separated by 74 nucleotides
DDA3937_RS19280: DDA3937_RS19280 - 50S ribosomal protein L4, at 4,390,269 to 4,390,874
_RS19280
DDA3937_RS19285: DDA3937_RS19285 - 50S ribosomal protein L3, at 4,390,885 to 4,391,514
_RS19285
DDA3937_RS19290: DDA3937_RS19290 - 30S ribosomal protein S10, at 4,391,547 to 4,391,858
_RS19290
DDA3937_RS19295: DDA3937_RS19295 - bacterioferritin, at 4,392,154 to 4,392,627
_RS19295
DDA3937_RS19300: DDA3937_RS19300 - bacterioferritin-associated ferredoxin, at 4,392,702 to 4,392,896
_RS19300
Position (kb) 4391
4392 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4392.096 kb on + strand at 4392.127 kb on + strand at 4392.214 kb on + strand, within DDA3937_RS19295 at 4392.214 kb on + strand, within DDA3937_RS19295 at 4392.215 kb on - strand, within DDA3937_RS19295 at 4392.287 kb on + strand, within DDA3937_RS19295 at 4392.287 kb on + strand, within DDA3937_RS19295 at 4392.287 kb on + strand, within DDA3937_RS19295 at 4392.287 kb on + strand, within DDA3937_RS19295 at 4392.288 kb on - strand, within DDA3937_RS19295 at 4392.288 kb on - strand, within DDA3937_RS19295 at 4392.288 kb on - strand, within DDA3937_RS19295 at 4392.288 kb on - strand, within DDA3937_RS19295 at 4392.288 kb on - strand, within DDA3937_RS19295 at 4392.308 kb on + strand, within DDA3937_RS19295 at 4392.309 kb on - strand, within DDA3937_RS19295 at 4392.309 kb on - strand, within DDA3937_RS19295 at 4392.309 kb on - strand, within DDA3937_RS19295 at 4392.379 kb on + strand, within DDA3937_RS19295 at 4392.379 kb on + strand, within DDA3937_RS19295 at 4392.380 kb on - strand, within DDA3937_RS19295 at 4392.380 kb on - strand, within DDA3937_RS19295 at 4392.380 kb on - strand at 4392.421 kb on - strand at 4392.454 kb on - strand, within DDA3937_RS19295 at 4392.455 kb on + strand, within DDA3937_RS19295 at 4392.455 kb on + strand, within DDA3937_RS19295 at 4392.456 kb on - strand, within DDA3937_RS19295 at 4392.456 kb on - strand, within DDA3937_RS19295 at 4392.456 kb on - strand, within DDA3937_RS19295 at 4392.494 kb on + strand, within DDA3937_RS19295 at 4392.494 kb on + strand, within DDA3937_RS19295 at 4392.494 kb on + strand, within DDA3937_RS19295 at 4392.494 kb on + strand, within DDA3937_RS19295 at 4392.495 kb on - strand, within DDA3937_RS19295 at 4392.495 kb on - strand, within DDA3937_RS19295 at 4392.495 kb on - strand, within DDA3937_RS19295 at 4392.495 kb on - strand, within DDA3937_RS19295 at 4392.495 kb on - strand, within DDA3937_RS19295 at 4392.495 kb on - strand, within DDA3937_RS19295 at 4392.554 kb on + strand, within DDA3937_RS19295 at 4392.603 kb on + strand at 4392.604 kb on - strand at 4392.615 kb on + strand at 4392.652 kb on + strand at 4392.662 kb on - strand at 4392.696 kb on + strand at 4392.704 kb on - strand at 4392.714 kb on - strand at 4392.715 kb on + strand at 4392.776 kb on + strand, within DDA3937_RS19300 at 4392.777 kb on - strand, within DDA3937_RS19300 at 4392.777 kb on - strand, within DDA3937_RS19300 at 4392.811 kb on - strand, within DDA3937_RS19300 at 4392.811 kb on - strand, within DDA3937_RS19300 at 4392.811 kb on - strand, within DDA3937_RS19300 at 4392.858 kb on - strand, within DDA3937_RS19300
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 4,392,096 + +2.9 4,392,127 + +0.4 4,392,214 + DDA3937_RS19295 0.13 -1.5 4,392,214 + DDA3937_RS19295 0.13 +1.1 4,392,215 - DDA3937_RS19295 0.13 -1.0 4,392,287 + DDA3937_RS19295 0.28 -0.1 4,392,287 + DDA3937_RS19295 0.28 +1.1 4,392,287 + DDA3937_RS19295 0.28 -0.6 4,392,287 + DDA3937_RS19295 0.28 -3.3 4,392,288 - DDA3937_RS19295 0.28 -1.7 4,392,288 - DDA3937_RS19295 0.28 -2.9 4,392,288 - DDA3937_RS19295 0.28 +1.8 4,392,288 - DDA3937_RS19295 0.28 -0.4 4,392,288 - DDA3937_RS19295 0.28 -2.3 4,392,308 + DDA3937_RS19295 0.32 +0.4 4,392,309 - DDA3937_RS19295 0.33 -0.3 4,392,309 - DDA3937_RS19295 0.33 +1.7 4,392,309 - DDA3937_RS19295 0.33 +0.6 4,392,379 + DDA3937_RS19295 0.47 -3.9 4,392,379 + DDA3937_RS19295 0.47 +1.7 4,392,380 - DDA3937_RS19295 0.48 +0.7 4,392,380 - DDA3937_RS19295 0.48 +0.3 4,392,380 - +2.1 4,392,421 - -1.3 4,392,454 - DDA3937_RS19295 0.63 -2.1 4,392,455 + DDA3937_RS19295 0.64 -0.0 4,392,455 + DDA3937_RS19295 0.64 +2.5 4,392,456 - DDA3937_RS19295 0.64 +0.8 4,392,456 - DDA3937_RS19295 0.64 -0.6 4,392,456 - DDA3937_RS19295 0.64 +0.2 4,392,494 + DDA3937_RS19295 0.72 +1.0 4,392,494 + DDA3937_RS19295 0.72 +2.2 4,392,494 + DDA3937_RS19295 0.72 +0.8 4,392,494 + DDA3937_RS19295 0.72 -1.3 4,392,495 - DDA3937_RS19295 0.72 +0.2 4,392,495 - DDA3937_RS19295 0.72 -0.9 4,392,495 - DDA3937_RS19295 0.72 -0.0 4,392,495 - DDA3937_RS19295 0.72 -1.2 4,392,495 - DDA3937_RS19295 0.72 -0.8 4,392,495 - DDA3937_RS19295 0.72 +2.7 4,392,554 + DDA3937_RS19295 0.84 +0.3 4,392,603 + -1.5 4,392,604 - +2.1 4,392,615 + +0.6 4,392,652 + -1.5 4,392,662 - +0.6 4,392,696 + -1.1 4,392,704 - -0.0 4,392,714 - -0.9 4,392,715 + +0.2 4,392,776 + DDA3937_RS19300 0.38 +0.4 4,392,777 - DDA3937_RS19300 0.38 +0.3 4,392,777 - DDA3937_RS19300 0.38 +0.2 4,392,811 - DDA3937_RS19300 0.56 -1.5 4,392,811 - DDA3937_RS19300 0.56 -0.1 4,392,811 - DDA3937_RS19300 0.56 -3.0 4,392,858 - DDA3937_RS19300 0.80 +2.3
Or see this region's nucleotide sequence