Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03030 and DDA3937_RS03035 are separated by 106 nucleotides DDA3937_RS03035 and DDA3937_RS03040 are separated by 8 nucleotides DDA3937_RS03040 and DDA3937_RS03045 are separated by 301 nucleotides DDA3937_RS03045 and DDA3937_RS03050 are separated by 60 nucleotides DDA3937_RS03050 and DDA3937_RS03055 are separated by 59 nucleotides
DDA3937_RS03030: DDA3937_RS03030 - ATP-dependent zinc metalloprotease FtsH, at 668,359 to 670,311
_RS03030
DDA3937_RS03035: DDA3937_RS03035 - dihydropteroate synthase, at 670,418 to 671,251
_RS03035
DDA3937_RS03040: DDA3937_RS03040 - phosphoglucosamine mutase, at 671,260 to 672,597
_RS03040
DDA3937_RS03045: DDA3937_RS03045 - preprotein translocase subunit SecG, at 672,899 to 673,234
_RS03045
DDA3937_RS03050: DDA3937_RS03050 - tRNA-Leu, at 673,295 to 673,381
_RS03050
DDA3937_RS03055: DDA3937_RS03055 - tRNA-Met, at 673,441 to 673,517
_RS03055
Position (kb) 671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 670.264 kb on - strand at 670.309 kb on + strand at 670.309 kb on + strand at 670.315 kb on + strand at 670.316 kb on - strand at 670.316 kb on - strand at 670.372 kb on + strand at 670.921 kb on + strand, within DDA3937_RS03035 at 670.922 kb on - strand, within DDA3937_RS03035 at 671.173 kb on + strand at 671.174 kb on - strand at 671.214 kb on + strand at 671.214 kb on + strand at 671.214 kb on + strand at 671.220 kb on + strand at 671.235 kb on + strand at 672.604 kb on + strand at 672.604 kb on + strand at 672.604 kb on + strand at 672.673 kb on + strand at 672.674 kb on - strand at 672.686 kb on - strand at 672.779 kb on + strand at 672.812 kb on + strand at 672.892 kb on + strand at 672.892 kb on + strand at 672.898 kb on + strand at 672.902 kb on + strand at 672.902 kb on + strand at 673.232 kb on + strand at 673.389 kb on - strand at 673.392 kb on + strand at 673.392 kb on + strand at 673.392 kb on + strand at 673.392 kb on + strand at 673.393 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 670,264 - -0.9 670,309 + -0.6 670,309 + -0.4 670,315 + -1.4 670,316 - -1.1 670,316 - +0.0 670,372 + -0.3 670,921 + DDA3937_RS03035 0.60 +0.7 670,922 - DDA3937_RS03035 0.60 -1.4 671,173 + -2.4 671,174 - +1.3 671,214 + -3.4 671,214 + -2.1 671,214 + -3.2 671,220 + +0.9 671,235 + -2.5 672,604 + -3.6 672,604 + +0.9 672,604 + -1.2 672,673 + +0.8 672,674 - +0.9 672,686 - -2.3 672,779 + -3.3 672,812 + +1.1 672,892 + -0.4 672,892 + -0.6 672,898 + +1.8 672,902 + -2.5 672,902 + -1.8 673,232 + -1.4 673,389 - -1.6 673,392 + +0.6 673,392 + -0.5 673,392 + -1.1 673,392 + +0.8 673,393 - -2.1
Or see this region's nucleotide sequence