Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02955

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02950 and DDA3937_RS02955 are separated by 127 nucleotidesDDA3937_RS02955 and DDA3937_RS02960 are separated by 246 nucleotides DDA3937_RS02950: DDA3937_RS02950 - DNA primase, at 653,652 to 655,406 _RS02950 DDA3937_RS02955: DDA3937_RS02955 - 30S ribosomal protein S21, at 655,534 to 655,749 _RS02955 DDA3937_RS02960: DDA3937_RS02960 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 655,996 to 657,009 _RS02960 Position (kb) 655 656Strain fitness (log2 ratio) -3 -2 -1 0 1at 655.424 kb on - strandat 655.424 kb on - strandat 655.424 kb on - strandat 655.424 kb on - strandat 655.430 kb on - strandat 655.489 kb on - strandat 655.862 kb on + strandat 655.902 kb on + strandat 655.902 kb on + strandat 655.902 kb on + strandat 655.902 kb on + strandat 655.902 kb on + strandat 655.903 kb on - strandat 655.903 kb on - strandat 655.907 kb on + strandat 655.907 kb on + strandat 655.908 kb on - strandat 655.908 kb on - strandat 655.908 kb on - strandat 655.908 kb on - strandat 655.908 kb on - strandat 655.908 kb on - strandat 655.909 kb on - strandat 655.912 kb on + strandat 655.912 kb on + strandat 655.912 kb on + strandat 655.913 kb on - strandat 655.913 kb on - strandat 655.957 kb on + strandat 655.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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655,424 - -0.5
655,424 - -2.4
655,424 - -1.2
655,424 - -2.5
655,430 - +0.4
655,489 - -1.6
655,862 + +0.2
655,902 + -1.1
655,902 + -3.1
655,902 + -0.2
655,902 + +1.0
655,902 + -0.2
655,903 - -0.8
655,903 - -1.1
655,907 + +0.0
655,907 + -1.6
655,908 - -0.0
655,908 - -2.8
655,908 - +0.4
655,908 - -3.6
655,908 - +0.3
655,908 - +0.3
655,909 - +1.0
655,912 + -1.6
655,912 + +1.3
655,912 + +1.2
655,913 - +0.4
655,913 - -1.3
655,957 + -0.7
655,958 - +0.2

Or see this region's nucleotide sequence