Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02150 and DDA3937_RS02155 are separated by 122 nucleotides DDA3937_RS02155 and DDA3937_RS02160 are separated by 342 nucleotides
DDA3937_RS02150: DDA3937_RS02150 - AAA family ATPase, at 477,762 to 478,922
_RS02150
DDA3937_RS02155: DDA3937_RS02155 - DeoR/GlpR transcriptional regulator, at 479,045 to 479,836
_RS02155
DDA3937_RS02160: DDA3937_RS02160 - transketolase, at 480,179 to 480,982
_RS02160
Position (kb) 479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 478.093 kb on + strand, within DDA3937_RS02150 at 478.697 kb on + strand, within DDA3937_RS02150 at 478.785 kb on + strand, within DDA3937_RS02150 at 478.984 kb on + strand at 478.992 kb on + strand at 479.027 kb on + strand at 479.028 kb on - strand at 479.031 kb on + strand at 479.031 kb on + strand at 479.032 kb on - strand at 479.032 kb on - strand at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.268 kb on - strand, within DDA3937_RS02155 at 479.437 kb on + strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.658 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.671 kb on - strand, within DDA3937_RS02155 at 479.758 kb on + strand at 479.889 kb on - strand at 480.175 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.225 kb on - strand at 480.299 kb on - strand, within DDA3937_RS02160 at 480.299 kb on - strand, within DDA3937_RS02160 at 480.761 kb on - strand, within DDA3937_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 478,093 + DDA3937_RS02150 0.29 +1.3 478,697 + DDA3937_RS02150 0.81 +1.3 478,785 + DDA3937_RS02150 0.88 -1.5 478,984 + -1.8 478,992 + -3.3 479,027 + -2.2 479,028 - -1.0 479,031 + -1.5 479,031 + -1.0 479,032 - +2.4 479,032 - -3.6 479,202 + DDA3937_RS02155 0.20 -3.5 479,202 + DDA3937_RS02155 0.20 -1.0 479,202 + DDA3937_RS02155 0.20 -2.5 479,203 - DDA3937_RS02155 0.20 -2.2 479,203 - DDA3937_RS02155 0.20 +0.4 479,203 - DDA3937_RS02155 0.20 -0.0 479,203 - DDA3937_RS02155 0.20 -0.9 479,268 - DDA3937_RS02155 0.28 -0.2 479,437 + DDA3937_RS02155 0.49 -0.5 479,656 - DDA3937_RS02155 0.77 -0.1 479,656 - DDA3937_RS02155 0.77 -0.8 479,658 + DDA3937_RS02155 0.77 -1.9 479,670 + DDA3937_RS02155 0.79 -0.6 479,670 + DDA3937_RS02155 0.79 -2.0 479,670 + DDA3937_RS02155 0.79 +3.5 479,671 - DDA3937_RS02155 0.79 -0.7 479,758 + -0.3 479,889 - -1.3 480,175 - +0.5 480,187 - -2.2 480,187 - -0.0 480,187 - +0.1 480,187 - +0.3 480,225 - -2.4 480,299 - DDA3937_RS02160 0.15 +1.1 480,299 - DDA3937_RS02160 0.15 +0.3 480,761 - DDA3937_RS02160 0.72 -2.3
Or see this region's nucleotide sequence