Experiment: Stem-Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01930 and DDA3937_RS01935 are separated by 220 nucleotides DDA3937_RS01935 and DDA3937_RS01940 are separated by 94 nucleotides
DDA3937_RS01930: DDA3937_RS01930 - YhcH/YjgK/YiaL family protein, at 433,337 to 433,804
_RS01930
DDA3937_RS01935: DDA3937_RS01935 - 6-phospho-beta-glucosidase, at 434,025 to 435,461
_RS01935
DDA3937_RS01940: DDA3937_RS01940 - ornithine carbamoyltransferase, at 435,556 to 436,572
_RS01940
Position (kb) 434
435
436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 433.103 kb on + strand at 433.104 kb on - strand at 433.104 kb on - strand at 433.137 kb on + strand at 433.288 kb on + strand at 433.288 kb on + strand at 433.324 kb on + strand at 433.376 kb on + strand at 433.377 kb on - strand at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.409 kb on + strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.410 kb on - strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.423 kb on + strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.424 kb on - strand, within DDA3937_RS01930 at 433.426 kb on + strand, within DDA3937_RS01930 at 433.468 kb on + strand, within DDA3937_RS01930 at 433.469 kb on - strand, within DDA3937_RS01930 at 433.529 kb on + strand, within DDA3937_RS01930 at 433.529 kb on + strand, within DDA3937_RS01930 at 433.541 kb on + strand, within DDA3937_RS01930 at 433.542 kb on - strand, within DDA3937_RS01930 at 433.542 kb on - strand, within DDA3937_RS01930 at 433.607 kb on - strand, within DDA3937_RS01930 at 433.761 kb on + strand at 433.761 kb on + strand at 433.761 kb on + strand at 433.761 kb on + strand at 433.761 kb on + strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.762 kb on - strand at 433.789 kb on + strand at 433.789 kb on + strand at 433.910 kb on - strand at 433.910 kb on - strand at 433.933 kb on + strand at 433.933 kb on + strand at 433.933 kb on + strand at 433.975 kb on + strand at 433.976 kb on - strand at 433.976 kb on - strand at 434.024 kb on + strand at 434.024 kb on + strand at 434.065 kb on + strand at 434.193 kb on + strand, within DDA3937_RS01935 at 434.220 kb on + strand, within DDA3937_RS01935 at 434.220 kb on + strand, within DDA3937_RS01935 at 434.221 kb on - strand, within DDA3937_RS01935 at 434.231 kb on + strand, within DDA3937_RS01935 at 434.231 kb on + strand, within DDA3937_RS01935 at 434.231 kb on + strand, within DDA3937_RS01935 at 434.231 kb on + strand, within DDA3937_RS01935 at 434.232 kb on - strand, within DDA3937_RS01935 at 434.232 kb on - strand, within DDA3937_RS01935 at 434.232 kb on - strand, within DDA3937_RS01935 at 434.232 kb on - strand, within DDA3937_RS01935 at 434.232 kb on - strand, within DDA3937_RS01935 at 434.446 kb on - strand, within DDA3937_RS01935 at 434.446 kb on - strand, within DDA3937_RS01935 at 434.533 kb on - strand, within DDA3937_RS01935 at 434.555 kb on + strand, within DDA3937_RS01935 at 434.555 kb on + strand, within DDA3937_RS01935 at 434.556 kb on - strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.647 kb on - strand, within DDA3937_RS01935 at 434.647 kb on - strand, within DDA3937_RS01935 at 434.647 kb on - strand, within DDA3937_RS01935 at 434.752 kb on - strand, within DDA3937_RS01935 at 434.752 kb on - strand, within DDA3937_RS01935 at 434.752 kb on - strand, within DDA3937_RS01935 at 434.754 kb on + strand, within DDA3937_RS01935 at 434.754 kb on + strand, within DDA3937_RS01935 at 434.755 kb on - strand, within DDA3937_RS01935 at 434.755 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.823 kb on - strand, within DDA3937_RS01935 at 434.857 kb on - strand, within DDA3937_RS01935 at 434.943 kb on + strand, within DDA3937_RS01935 at 434.944 kb on - strand, within DDA3937_RS01935 at 434.944 kb on - strand, within DDA3937_RS01935 at 434.944 kb on - strand, within DDA3937_RS01935 at 434.954 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.962 kb on - strand at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand at 435.042 kb on - strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.144 kb on - strand, within DDA3937_RS01935 at 435.173 kb on + strand, within DDA3937_RS01935 at 435.173 kb on + strand, within DDA3937_RS01935 at 435.174 kb on - strand, within DDA3937_RS01935 at 435.174 kb on - strand, within DDA3937_RS01935 at 435.174 kb on - strand, within DDA3937_RS01935 at 435.233 kb on + strand, within DDA3937_RS01935 at 435.285 kb on + strand, within DDA3937_RS01935 at 435.459 kb on + strand at 435.459 kb on + strand at 435.460 kb on - strand at 435.460 kb on - strand at 435.460 kb on - strand at 435.460 kb on - strand at 435.557 kb on + strand at 435.844 kb on + strand, within DDA3937_RS01940 at 435.845 kb on - strand, within DDA3937_RS01940 at 435.883 kb on - strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.895 kb on + strand, within DDA3937_RS01940 at 435.896 kb on - strand, within DDA3937_RS01940 at 436.056 kb on + strand, within DDA3937_RS01940 at 436.056 kb on + strand, within DDA3937_RS01940 at 436.057 kb on - strand, within DDA3937_RS01940 at 436.057 kb on - strand, within DDA3937_RS01940 at 436.068 kb on + strand, within DDA3937_RS01940 at 436.091 kb on + strand, within DDA3937_RS01940 at 436.271 kb on + strand, within DDA3937_RS01940 at 436.271 kb on + strand, within DDA3937_RS01940 at 436.272 kb on - strand, within DDA3937_RS01940 at 436.346 kb on + strand, within DDA3937_RS01940 at 436.347 kb on - strand, within DDA3937_RS01940 at 436.371 kb on - strand, within DDA3937_RS01940 at 436.371 kb on - strand, within DDA3937_RS01940
Per-strain Table
Position Strand Gene LocusTag Fraction Stem-Norland remove 433,103 + +0.3 433,104 - -0.9 433,104 - +1.6 433,137 + -1.1 433,288 + +1.1 433,288 + -3.0 433,324 + -0.6 433,376 + +0.4 433,377 - +1.6 433,409 + DDA3937_RS01930 0.15 -2.7 433,409 + DDA3937_RS01930 0.15 -1.9 433,409 + DDA3937_RS01930 0.15 +0.7 433,409 + DDA3937_RS01930 0.15 -1.7 433,409 + DDA3937_RS01930 0.15 -1.5 433,410 - DDA3937_RS01930 0.16 -1.3 433,410 - DDA3937_RS01930 0.16 -0.6 433,410 - DDA3937_RS01930 0.16 -1.2 433,410 - DDA3937_RS01930 0.16 -1.5 433,423 + DDA3937_RS01930 0.18 +1.7 433,423 + DDA3937_RS01930 0.18 +1.0 433,423 + DDA3937_RS01930 0.18 -1.5 433,423 + DDA3937_RS01930 0.18 +1.4 433,424 - DDA3937_RS01930 0.19 +1.4 433,424 - DDA3937_RS01930 0.19 -0.1 433,424 - DDA3937_RS01930 0.19 +1.2 433,424 - DDA3937_RS01930 0.19 -1.3 433,424 - DDA3937_RS01930 0.19 -4.0 433,424 - DDA3937_RS01930 0.19 -0.8 433,426 + DDA3937_RS01930 0.19 +0.6 433,468 + DDA3937_RS01930 0.28 -3.9 433,469 - DDA3937_RS01930 0.28 -2.8 433,529 + DDA3937_RS01930 0.41 +1.3 433,529 + DDA3937_RS01930 0.41 +1.5 433,541 + DDA3937_RS01930 0.44 -1.4 433,542 - DDA3937_RS01930 0.44 -0.4 433,542 - DDA3937_RS01930 0.44 -2.0 433,607 - DDA3937_RS01930 0.58 +0.1 433,761 + +2.6 433,761 + -0.3 433,761 + -1.3 433,761 + -2.2 433,761 + -2.5 433,762 - +0.2 433,762 - -1.3 433,762 - +2.7 433,762 - +0.8 433,762 - -0.1 433,762 - +2.8 433,762 - -0.3 433,789 + +1.1 433,789 + -0.7 433,910 - +0.8 433,910 - +3.2 433,933 + +0.3 433,933 + -0.8 433,933 + -1.3 433,975 + +1.3 433,976 - +0.3 433,976 - +0.7 434,024 + -1.1 434,024 + -1.9 434,065 + +2.4 434,193 + DDA3937_RS01935 0.12 +0.8 434,220 + DDA3937_RS01935 0.14 -1.0 434,220 + DDA3937_RS01935 0.14 -0.7 434,221 - DDA3937_RS01935 0.14 +1.0 434,231 + DDA3937_RS01935 0.14 +0.4 434,231 + DDA3937_RS01935 0.14 -0.5 434,231 + DDA3937_RS01935 0.14 -2.5 434,231 + DDA3937_RS01935 0.14 +2.3 434,232 - DDA3937_RS01935 0.14 -2.9 434,232 - DDA3937_RS01935 0.14 -0.6 434,232 - DDA3937_RS01935 0.14 -3.4 434,232 - DDA3937_RS01935 0.14 -0.1 434,232 - DDA3937_RS01935 0.14 -1.6 434,446 - DDA3937_RS01935 0.29 +1.2 434,446 - DDA3937_RS01935 0.29 -2.0 434,533 - DDA3937_RS01935 0.35 -0.2 434,555 + DDA3937_RS01935 0.37 +0.9 434,555 + DDA3937_RS01935 0.37 -0.2 434,556 - DDA3937_RS01935 0.37 +0.2 434,646 + DDA3937_RS01935 0.43 +1.4 434,646 + DDA3937_RS01935 0.43 -0.6 434,646 + DDA3937_RS01935 0.43 -2.1 434,646 + DDA3937_RS01935 0.43 +1.2 434,646 + DDA3937_RS01935 0.43 +1.6 434,646 + DDA3937_RS01935 0.43 -2.2 434,646 + DDA3937_RS01935 0.43 +1.9 434,647 - DDA3937_RS01935 0.43 -3.1 434,647 - DDA3937_RS01935 0.43 -0.4 434,647 - DDA3937_RS01935 0.43 -2.0 434,752 - DDA3937_RS01935 0.51 +0.4 434,752 - DDA3937_RS01935 0.51 +1.0 434,752 - DDA3937_RS01935 0.51 +0.3 434,754 + DDA3937_RS01935 0.51 +3.7 434,754 + DDA3937_RS01935 0.51 -2.3 434,755 - DDA3937_RS01935 0.51 -1.9 434,755 - DDA3937_RS01935 0.51 -2.0 434,818 - DDA3937_RS01935 0.55 -1.9 434,818 - DDA3937_RS01935 0.55 -2.6 434,818 - DDA3937_RS01935 0.55 +2.0 434,818 - DDA3937_RS01935 0.55 -0.8 434,823 - DDA3937_RS01935 0.56 -2.6 434,857 - DDA3937_RS01935 0.58 -2.9 434,943 + DDA3937_RS01935 0.64 -0.1 434,944 - DDA3937_RS01935 0.64 -2.1 434,944 - DDA3937_RS01935 0.64 +4.4 434,944 - DDA3937_RS01935 0.64 +3.4 434,954 + DDA3937_RS01935 0.65 -0.0 434,958 + DDA3937_RS01935 0.65 -1.4 434,958 + DDA3937_RS01935 0.65 +0.1 434,958 + DDA3937_RS01935 0.65 +0.3 434,958 + DDA3937_RS01935 0.65 +2.2 434,958 + DDA3937_RS01935 0.65 -1.9 434,959 - DDA3937_RS01935 0.65 -2.2 434,959 - DDA3937_RS01935 0.65 +1.9 434,959 - DDA3937_RS01935 0.65 +1.2 434,959 - DDA3937_RS01935 0.65 -2.3 434,959 - DDA3937_RS01935 0.65 -0.0 434,959 - DDA3937_RS01935 0.65 +0.6 434,959 - DDA3937_RS01935 0.65 -0.6 434,961 + DDA3937_RS01935 0.65 +0.8 434,961 + DDA3937_RS01935 0.65 -0.5 434,961 + DDA3937_RS01935 0.65 -1.3 434,961 + DDA3937_RS01935 0.65 +1.5 434,961 + DDA3937_RS01935 0.65 +1.5 434,961 + DDA3937_RS01935 0.65 -0.3 434,961 + DDA3937_RS01935 0.65 -1.0 434,961 + DDA3937_RS01935 0.65 +2.2 434,962 - -0.3 434,962 - DDA3937_RS01935 0.65 +0.6 434,962 - DDA3937_RS01935 0.65 +1.8 434,962 - DDA3937_RS01935 0.65 +1.5 434,962 - DDA3937_RS01935 0.65 -2.5 434,962 - DDA3937_RS01935 0.65 -2.6 434,962 - DDA3937_RS01935 0.65 -0.5 434,962 - DDA3937_RS01935 0.65 -2.4 434,962 - DDA3937_RS01935 0.65 -1.3 434,962 - DDA3937_RS01935 0.65 -1.1 434,962 - DDA3937_RS01935 0.65 +0.6 434,962 - DDA3937_RS01935 0.65 -0.6 434,962 - -0.6 435,042 - DDA3937_RS01935 0.71 -0.6 435,117 + DDA3937_RS01935 0.76 -0.7 435,117 + DDA3937_RS01935 0.76 -0.2 435,117 + DDA3937_RS01935 0.76 -0.3 435,117 + DDA3937_RS01935 0.76 -2.3 435,117 + DDA3937_RS01935 0.76 +0.6 435,118 - DDA3937_RS01935 0.76 -2.3 435,118 - DDA3937_RS01935 0.76 +2.5 435,118 - DDA3937_RS01935 0.76 +0.6 435,118 - DDA3937_RS01935 0.76 -1.0 435,118 - DDA3937_RS01935 0.76 -0.2 435,118 - DDA3937_RS01935 0.76 -2.0 435,118 - DDA3937_RS01935 0.76 +0.6 435,118 - DDA3937_RS01935 0.76 -1.2 435,118 - DDA3937_RS01935 0.76 +0.3 435,118 - DDA3937_RS01935 0.76 +1.5 435,144 - DDA3937_RS01935 0.78 -0.1 435,173 + DDA3937_RS01935 0.80 +0.5 435,173 + DDA3937_RS01935 0.80 -2.5 435,174 - DDA3937_RS01935 0.80 -2.1 435,174 - DDA3937_RS01935 0.80 -1.7 435,174 - DDA3937_RS01935 0.80 +2.1 435,233 + DDA3937_RS01935 0.84 -0.3 435,285 + DDA3937_RS01935 0.88 -1.5 435,459 + -1.9 435,459 + +1.8 435,460 - +1.0 435,460 - -0.5 435,460 - -3.4 435,460 - +1.9 435,557 + -2.8 435,844 + DDA3937_RS01940 0.28 -1.0 435,845 - DDA3937_RS01940 0.28 +1.6 435,883 - DDA3937_RS01940 0.32 -2.6 435,884 + DDA3937_RS01940 0.32 -0.3 435,884 + DDA3937_RS01940 0.32 -2.5 435,884 + DDA3937_RS01940 0.32 -0.7 435,884 + DDA3937_RS01940 0.32 -2.1 435,884 + DDA3937_RS01940 0.32 -0.1 435,884 + DDA3937_RS01940 0.32 -3.1 435,885 - DDA3937_RS01940 0.32 -0.3 435,885 - DDA3937_RS01940 0.32 -2.5 435,885 - DDA3937_RS01940 0.32 -3.5 435,885 - DDA3937_RS01940 0.32 -2.2 435,885 - DDA3937_RS01940 0.32 -0.8 435,895 + DDA3937_RS01940 0.33 -0.9 435,896 - DDA3937_RS01940 0.33 -3.1 436,056 + DDA3937_RS01940 0.49 -0.7 436,056 + DDA3937_RS01940 0.49 -2.7 436,057 - DDA3937_RS01940 0.49 +0.4 436,057 - DDA3937_RS01940 0.49 -1.7 436,068 + DDA3937_RS01940 0.50 -1.3 436,091 + DDA3937_RS01940 0.53 -3.8 436,271 + DDA3937_RS01940 0.70 -2.6 436,271 + DDA3937_RS01940 0.70 -1.0 436,272 - DDA3937_RS01940 0.70 -1.3 436,346 + DDA3937_RS01940 0.78 -1.3 436,347 - DDA3937_RS01940 0.78 -1.9 436,371 - DDA3937_RS01940 0.80 -1.5 436,371 - DDA3937_RS01940 0.80 -2.9
Or see this region's nucleotide sequence