Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01100

Experiment: Stem-Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01090 and DDA3937_RS01095 are separated by 66 nucleotidesDDA3937_RS01095 and DDA3937_RS01100 are separated by 320 nucleotidesDDA3937_RS01100 and DDA3937_RS01105 are separated by 107 nucleotides DDA3937_RS01090: DDA3937_RS01090 - 50S ribosomal protein L10, at 245,953 to 246,450 _RS01090 DDA3937_RS01095: DDA3937_RS01095 - 50S ribosomal protein L7/L12, at 246,517 to 246,885 _RS01095 DDA3937_RS01100: DDA3937_RS01100 - DNA-directed RNA polymerase subunit beta, at 247,206 to 251,234 _RS01100 DDA3937_RS01105: DDA3937_RS01105 - DNA-directed RNA polymerase subunit beta', at 251,342 to 255,565 _RS01105 Position (kb) 247 248 249 250 251 252Strain fitness (log2 ratio) -1 0 1at 251.232 kb on + strandat 251.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Stem-Norland
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251,232 + -0.9
251,320 + -0.9

Or see this region's nucleotide sequence