Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15475

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,467,510	+				+0.3
3,467,510	+				-0.6
3,467,510	+				-0.3
3,467,511	-				-0.1
3,467,560	-				+0.2
3,467,581	+		HER17_RS15470	0.10	-0.1
3,467,581	+		HER17_RS15470	0.10	+0.4
3,467,626	+		HER17_RS15470	0.17	+0.5
3,467,626	+		HER17_RS15470	0.17	-0.1
3,467,675	-		HER17_RS15470	0.25	-0.6
3,467,675	-		HER17_RS15470	0.25	+0.3
3,467,750	+		HER17_RS15470	0.37	+0.8
3,467,751	-		HER17_RS15470	0.37	-0.2
3,467,751	-		HER17_RS15470	0.37	-0.3
3,467,751	-		HER17_RS15470	0.37	+0.4
3,467,751	-		HER17_RS15470	0.37	-0.3
3,467,772	+		HER17_RS15470	0.40	-0.7
3,467,772	+		HER17_RS15470	0.40	+0.3
3,467,773	-		HER17_RS15470	0.40	+1.1
3,467,773	-		HER17_RS15470	0.40	-0.9
3,467,780	+		HER17_RS15470	0.41	+0.0
3,467,781	-		HER17_RS15470	0.41	-0.5
3,467,781	-		HER17_RS15470	0.41	+0.7
3,467,794	+		HER17_RS15470	0.44	-0.1
3,467,836	+		HER17_RS15470	0.50	-0.3
3,467,837	-		HER17_RS15470	0.50	-0.1
3,467,862	-		HER17_RS15470	0.54	-1.1
3,468,140	+				-0.2
3,468,140	+				+0.2
3,468,166	+				+0.9
3,468,166	+				+0.9
3,468,167	-				+0.5
3,468,167	-				-0.3
3,468,170	+				+0.2
3,468,170	+				+0.3
3,468,171	-				-0.3
3,468,171	-				+0.4
3,468,171	-				+0.3
3,468,171	-				-0.4
3,468,183	+				-1.8
3,468,184	-				-0.4
3,468,186	+				+0.2
3,468,186	+				+1.0
3,468,187	-				+0.1
3,468,187	-				-0.3
3,468,187	-				+0.3
3,468,189	+				-0.6
3,468,190	-				+0.7
3,468,190	-				+0.3
3,468,211	-				+0.3
3,468,220	+				-0.4
3,468,221	-				-0.2
3,468,248	-				+0.5
3,468,281	+				-2.9
3,468,293	-				+0.8
3,468,325	-				+0.1
3,468,395	+				+0.2
3,468,396	-				-0.1
3,468,435	+				-1.3
3,468,443	+				-0.0
3,468,444	-				+0.7
3,468,446	+				-0.8
3,468,446	+				+0.3
3,468,446	+				+0.8
3,468,446	+				+0.0
3,468,446	+				+0.1
3,468,447	-				-0.1
3,468,447	-				+0.1
3,468,447	-				-0.8
3,468,570	+		HER17_RS15475	0.13	-2.4
3,468,570	+		HER17_RS15475	0.13	+0.9
3,468,570	+		HER17_RS15475	0.13	-0.5
3,468,570	+		HER17_RS15475	0.13	+0.8
3,468,571	-		HER17_RS15475	0.13	-0.6
3,468,571	-		HER17_RS15475	0.13	-1.2
3,468,571	-		HER17_RS15475	0.13	+0.6
3,468,630	+		HER17_RS15475	0.18	-0.4
3,468,630	+		HER17_RS15475	0.18	+0.9
3,468,631	-		HER17_RS15475	0.18	+1.6
3,468,640	+		HER17_RS15475	0.19	-0.3
3,468,704	+		HER17_RS15475	0.25	-2.2
3,468,704	+		HER17_RS15475	0.25	+1.4
3,468,705	-		HER17_RS15475	0.25	+0.3
3,468,705	-		HER17_RS15475	0.25	+0.8
3,468,705	-		HER17_RS15475	0.25	+0.4
3,468,705	-		HER17_RS15475	0.25	+0.2
3,468,708	+		HER17_RS15475	0.25	+0.1
3,468,846	+		HER17_RS15475	0.38	-0.3
3,468,846	+		HER17_RS15475	0.38	-0.4
3,468,847	-		HER17_RS15475	0.38	+0.0
3,468,851	-		HER17_RS15475	0.38	-0.2
3,468,851	-		HER17_RS15475	0.38	+1.4
3,468,851	-		HER17_RS15475	0.38	+0.4
3,468,966	+		HER17_RS15475	0.48	+0.5
3,468,966	+		HER17_RS15475	0.48	+0.2
3,468,966	+		HER17_RS15475	0.48	-0.0
3,468,966	+		HER17_RS15475	0.48	+0.2
3,468,966	+		HER17_RS15475	0.48	-0.2
3,468,967	-		HER17_RS15475	0.49	-0.9
3,468,967	-		HER17_RS15475	0.49	+0.8
3,468,967	-		HER17_RS15475	0.49	-0.3
3,468,998	-		HER17_RS15475	0.51	-0.2
3,468,998	-		HER17_RS15475	0.51	-1.4
3,469,020	+		HER17_RS15475	0.53	+0.7
3,469,020	+		HER17_RS15475	0.53	+0.1
3,469,020	+		HER17_RS15475	0.53	-0.6
3,469,020	+		HER17_RS15475	0.53	-1.0
3,469,020	+		HER17_RS15475	0.53	+0.1
3,469,020	+		HER17_RS15475	0.53	-0.1
3,469,020	+		HER17_RS15475	0.53	-0.1
3,469,021	-		HER17_RS15475	0.53	+0.4
3,469,021	-		HER17_RS15475	0.53	+0.3
3,469,021	-		HER17_RS15475	0.53	+1.0
3,469,021	-		HER17_RS15475	0.53	-0.0
3,469,062	+		HER17_RS15475	0.57	+0.2
3,469,062	+		HER17_RS15475	0.57	-0.7
3,469,062	+		HER17_RS15475	0.57	+0.6
3,469,062	+		HER17_RS15475	0.57	-0.7
3,469,062	+		HER17_RS15475	0.57	+0.4
3,469,063	-		HER17_RS15475	0.57	+0.2
3,469,063	-		HER17_RS15475	0.57	+0.5
3,469,116	+		HER17_RS15475	0.62	-1.7
3,469,311	+		HER17_RS15475	0.80	-0.5
3,469,311	+		HER17_RS15475	0.80	+0.6
3,469,312	-		HER17_RS15475	0.80	+0.9
3,469,312	-		HER17_RS15475	0.80	+0.4
3,469,312	-		HER17_RS15475	0.80	+0.3
3,469,534	+				-1.6
3,469,545	+				+0.2
3,469,545	+				+0.7
3,469,598	-				+1.4
3,469,598	-				-0.3
3,469,621	+				-0.4
3,469,622	-				+0.3
3,469,711	+				-0.2
3,469,732	+				-0.1
3,469,829	+		HER17_RS15480	0.14	+0.1
3,469,829	+		HER17_RS15480	0.14	+0.4
3,469,829	+		HER17_RS15480	0.14	+0.4
3,469,830	-		HER17_RS15480	0.14	+0.1
3,469,830	-		HER17_RS15480	0.14	-0.2
3,469,830	-		HER17_RS15480	0.14	+0.7
3,469,830	-		HER17_RS15480	0.14	+0.8
3,469,855	+		HER17_RS15480	0.15	+0.9
3,469,855	+		HER17_RS15480	0.15	+0.0
3,469,855	+		HER17_RS15480	0.15	-0.3
3,469,855	+		HER17_RS15480	0.15	+0.1
3,469,855	+		HER17_RS15480	0.15	+0.0
3,469,856	-		HER17_RS15480	0.15	+0.2
3,469,858	+		HER17_RS15480	0.15	-0.1
3,469,858	+		HER17_RS15480	0.15	-0.0
3,469,859	-		HER17_RS15480	0.15	-2.5
3,469,946	-		HER17_RS15480	0.19	-0.6
3,469,990	-		HER17_RS15480	0.22	+1.2
3,470,016	-		HER17_RS15480	0.23	+0.0
3,470,016	-		HER17_RS15480	0.23	+0.1
3,470,045	-		HER17_RS15480	0.24	+0.4
3,470,045	-		HER17_RS15480	0.24	-0.7
3,470,048	-		HER17_RS15480	0.24	-0.6
3,470,048	-		HER17_RS15480	0.24	-0.4
3,470,048	-		HER17_RS15480	0.24	+0.1
3,470,130	+		HER17_RS15480	0.28	-0.0
3,470,130	+		HER17_RS15480	0.28	+0.9
3,470,130	+		HER17_RS15480	0.28	+0.1
3,470,130	+		HER17_RS15480	0.28	+0.2
3,470,131	-		HER17_RS15480	0.28	+1.6
3,470,131	-		HER17_RS15480	0.28	-0.1
3,470,131	-		HER17_RS15480	0.28	-0.9
3,470,296	+		HER17_RS15480	0.36	+0.7
3,470,297	-		HER17_RS15480	0.36	-0.8
3,470,297	-		HER17_RS15480	0.36	+1.3
3,470,297	-		HER17_RS15480	0.36	+0.4
3,470,303	+		HER17_RS15480	0.36	+0.8
3,470,304	-		HER17_RS15480	0.36	+0.2
3,470,363	-		HER17_RS15480	0.39	-0.0
3,470,363	-		HER17_RS15480	0.39	+0.2
3,470,394	-		HER17_RS15480	0.40	+0.5
3,470,394	-		HER17_RS15480	0.40	+1.0
3,470,394	-		HER17_RS15480	0.40	-2.4
3,470,394	-		HER17_RS15480	0.40	+0.3
3,470,477	+		HER17_RS15480	0.44	+1.1
3,470,477	+		HER17_RS15480	0.44	+1.5
3,470,477	+		HER17_RS15480	0.44	-0.1
3,470,477	+		HER17_RS15480	0.44	+1.3
3,470,477	+		HER17_RS15480	0.44	-0.3
3,470,477	+		HER17_RS15480	0.44	+0.3
3,470,477	+		HER17_RS15480	0.44	-1.4
3,470,477	+		HER17_RS15480	0.44	-1.2
3,470,483	+		HER17_RS15480	0.45	+0.3
3,470,483	+		HER17_RS15480	0.45	-0.8
3,470,483	+		HER17_RS15480	0.45	+0.1
3,470,484	-		HER17_RS15480	0.45	-0.0
3,470,484	-		HER17_RS15480	0.45	-0.4
3,470,484	-		HER17_RS15480	0.45	-1.1
3,470,528	+		HER17_RS15480	0.47	-0.2
3,470,529	-		HER17_RS15480	0.47	+0.6
3,470,529	-		HER17_RS15480	0.47	-0.1
3,470,529	-		HER17_RS15480	0.47	-0.4
3,470,529	-		HER17_RS15480	0.47	+0.4