Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14580

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS14575 and HER17_RS14580 overlap by 4 nucleotidesHER17_RS14580 and HER17_RS14585 overlap by 4 nucleotides HER17_RS14575: HER17_RS14575 - O-antigen translocase, at 3,278,104 to 3,279,369 _RS14575 HER17_RS14580: HER17_RS14580 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 3,279,366 to 3,280,478 _RS14580 HER17_RS14585: HER17_RS14585 - formyl transferase, at 3,280,475 to 3,281,668 _RS14585 Position (kb) 3279 3280 3281Strain fitness (log2 ratio) -2 -1 0 1 2at 3278.367 kb on + strand, within HER17_RS14575at 3278.764 kb on + strand, within HER17_RS14575at 3278.890 kb on + strand, within HER17_RS14575at 3279.193 kb on + strand, within HER17_RS14575at 3279.383 kb on + strandat 3279.395 kb on + strandat 3279.395 kb on + strandat 3279.447 kb on + strandat 3279.546 kb on + strand, within HER17_RS14580at 3280.209 kb on + strand, within HER17_RS14580at 3280.515 kb on - strandat 3280.604 kb on + strand, within HER17_RS14585

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,278,367 + HER17_RS14575 0.21 -2.0
3,278,764 + HER17_RS14575 0.52 +0.0
3,278,890 + HER17_RS14575 0.62 -0.1
3,279,193 + HER17_RS14575 0.86 +0.5
3,279,383 + -0.2
3,279,395 + +0.8
3,279,395 + +0.3
3,279,447 + -0.4
3,279,546 + HER17_RS14580 0.16 -0.3
3,280,209 + HER17_RS14580 0.76 +2.1
3,280,515 - +0.8
3,280,604 + HER17_RS14585 0.11 +0.1

Or see this region's nucleotide sequence