Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05625

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS05615 and HER17_RS05620 are separated by 42 nucleotidesHER17_RS05620 and HER17_RS05625 are separated by 136 nucleotidesHER17_RS05625 and HER17_RS05630 are separated by 14 nucleotidesHER17_RS05630 and HER17_RS05635 are separated by 159 nucleotides HER17_RS05615: HER17_RS05615 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 1,237,951 to 1,239,969 _RS05615 HER17_RS05620: HER17_RS05620 - LysE family translocator, at 1,240,012 to 1,240,602 _RS05620 HER17_RS05625: HER17_RS05625 - PLP-dependent aminotransferase family protein, at 1,240,739 to 1,242,199 _RS05625 HER17_RS05630: HER17_RS05630 - glutathione S-transferase, at 1,242,214 to 1,242,837 _RS05630 HER17_RS05635: HER17_RS05635 - glutamate-1-semialdehyde 2,1-aminomutase, at 1,242,997 to 1,244,277 _RS05635 Position (kb) 1240 1241 1242 1243Strain fitness (log2 ratio) -2 -1 0 1at 1239.851 kb on + strandat 1239.851 kb on + strandat 1239.852 kb on - strandat 1239.852 kb on - strandat 1239.852 kb on - strandat 1239.922 kb on - strandat 1239.934 kb on + strandat 1239.943 kb on + strandat 1239.943 kb on + strandat 1239.947 kb on + strandat 1239.947 kb on + strandat 1239.947 kb on + strandat 1239.947 kb on + strandat 1239.948 kb on - strandat 1239.968 kb on - strandat 1239.968 kb on - strandat 1240.153 kb on + strand, within HER17_RS05620at 1240.153 kb on + strand, within HER17_RS05620at 1240.153 kb on + strand, within HER17_RS05620at 1240.153 kb on + strand, within HER17_RS05620at 1240.154 kb on - strand, within HER17_RS05620at 1240.154 kb on - strand, within HER17_RS05620at 1240.220 kb on + strand, within HER17_RS05620at 1240.220 kb on + strand, within HER17_RS05620at 1240.221 kb on - strand, within HER17_RS05620at 1240.221 kb on - strand, within HER17_RS05620at 1240.221 kb on - strand, within HER17_RS05620at 1240.226 kb on - strand, within HER17_RS05620at 1240.276 kb on + strand, within HER17_RS05620at 1240.276 kb on + strand, within HER17_RS05620at 1240.276 kb on + strand, within HER17_RS05620at 1240.306 kb on + strand, within HER17_RS05620at 1240.368 kb on - strand, within HER17_RS05620at 1240.471 kb on + strand, within HER17_RS05620at 1240.472 kb on - strand, within HER17_RS05620at 1240.477 kb on - strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.498 kb on - strand, within HER17_RS05620at 1240.543 kb on - strand, within HER17_RS05620at 1240.577 kb on + strandat 1240.578 kb on - strandat 1240.578 kb on - strandat 1240.633 kb on + strandat 1240.639 kb on - strandat 1240.715 kb on + strandat 1240.716 kb on - strandat 1240.716 kb on - strandat 1240.716 kb on - strandat 1240.766 kb on - strandat 1240.805 kb on - strandat 1240.847 kb on - strandat 1240.875 kb on + strandat 1240.876 kb on - strandat 1240.876 kb on - strandat 1240.876 kb on - strandat 1240.890 kb on + strand, within HER17_RS05625at 1240.893 kb on + strand, within HER17_RS05625at 1240.893 kb on + strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.906 kb on + strand, within HER17_RS05625at 1240.952 kb on + strand, within HER17_RS05625at 1240.991 kb on - strand, within HER17_RS05625at 1241.078 kb on + strand, within HER17_RS05625at 1241.078 kb on + strand, within HER17_RS05625at 1241.079 kb on - strand, within HER17_RS05625at 1241.120 kb on + strand, within HER17_RS05625at 1241.146 kb on - strand, within HER17_RS05625at 1241.189 kb on + strand, within HER17_RS05625at 1241.254 kb on + strand, within HER17_RS05625at 1241.254 kb on + strand, within HER17_RS05625at 1241.319 kb on + strand, within HER17_RS05625at 1241.369 kb on + strand, within HER17_RS05625at 1241.597 kb on - strand, within HER17_RS05625at 1241.610 kb on + strand, within HER17_RS05625at 1241.612 kb on + strand, within HER17_RS05625at 1241.612 kb on + strand, within HER17_RS05625at 1241.684 kb on + strand, within HER17_RS05625at 1241.684 kb on + strand, within HER17_RS05625at 1241.684 kb on + strand, within HER17_RS05625at 1241.684 kb on + strand, within HER17_RS05625at 1241.684 kb on + strand, within HER17_RS05625at 1241.685 kb on - strand, within HER17_RS05625at 1241.685 kb on - strand, within HER17_RS05625at 1241.685 kb on - strand, within HER17_RS05625at 1241.847 kb on - strand, within HER17_RS05625at 1242.060 kb on - strandat 1242.061 kb on + strandat 1242.061 kb on + strandat 1242.062 kb on - strandat 1242.080 kb on - strandat 1242.126 kb on - strandat 1242.126 kb on - strandat 1242.131 kb on + strandat 1242.132 kb on - strandat 1242.197 kb on + strandat 1242.197 kb on + strandat 1242.198 kb on - strandat 1242.203 kb on + strandat 1242.203 kb on + strandat 1242.203 kb on + strandat 1242.204 kb on - strandat 1242.204 kb on - strandat 1242.204 kb on - strandat 1242.216 kb on - strandat 1242.272 kb on + strandat 1242.272 kb on + strandat 1242.272 kb on + strandat 1242.273 kb on - strandat 1242.273 kb on - strandat 1242.273 kb on - strandat 1242.275 kb on + strandat 1242.275 kb on + strandat 1242.275 kb on + strandat 1242.383 kb on + strand, within HER17_RS05630at 1242.384 kb on - strand, within HER17_RS05630at 1242.384 kb on - strand, within HER17_RS05630at 1242.384 kb on - strand, within HER17_RS05630at 1242.501 kb on + strand, within HER17_RS05630at 1242.501 kb on + strand, within HER17_RS05630at 1242.502 kb on - strand, within HER17_RS05630at 1242.628 kb on + strand, within HER17_RS05630at 1242.629 kb on - strand, within HER17_RS05630at 1242.629 kb on - strand, within HER17_RS05630at 1242.629 kb on - strand, within HER17_RS05630at 1242.629 kb on - strand, within HER17_RS05630at 1242.629 kb on - strand, within HER17_RS05630at 1242.630 kb on + strand, within HER17_RS05630at 1242.630 kb on + strand, within HER17_RS05630at 1242.630 kb on + strand, within HER17_RS05630at 1242.631 kb on - strand, within HER17_RS05630at 1242.631 kb on - strand, within HER17_RS05630at 1242.690 kb on + strand, within HER17_RS05630at 1242.691 kb on - strand, within HER17_RS05630at 1242.729 kb on + strand, within HER17_RS05630at 1242.863 kb on + strandat 1242.864 kb on - strandat 1242.870 kb on - strandat 1242.870 kb on - strandat 1242.870 kb on - strandat 1242.885 kb on - strandat 1242.885 kb on - strandat 1242.928 kb on + strandat 1242.990 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,239,851 + +0.2
1,239,851 + -0.1
1,239,852 - -0.9
1,239,852 - +0.3
1,239,852 - +0.4
1,239,922 - +0.3
1,239,934 + -2.0
1,239,943 + +0.5
1,239,943 + -0.1
1,239,947 + +0.7
1,239,947 + +0.5
1,239,947 + +0.6
1,239,947 + +0.8
1,239,948 - -0.6
1,239,968 - +0.2
1,239,968 - -0.2
1,240,153 + HER17_RS05620 0.24 -1.8
1,240,153 + HER17_RS05620 0.24 +0.3
1,240,153 + HER17_RS05620 0.24 -0.0
1,240,153 + HER17_RS05620 0.24 +0.6
1,240,154 - HER17_RS05620 0.24 +1.2
1,240,154 - HER17_RS05620 0.24 -0.4
1,240,220 + HER17_RS05620 0.35 +0.6
1,240,220 + HER17_RS05620 0.35 -0.3
1,240,221 - HER17_RS05620 0.35 -0.2
1,240,221 - HER17_RS05620 0.35 -0.8
1,240,221 - HER17_RS05620 0.35 -0.6
1,240,226 - HER17_RS05620 0.36 -0.1
1,240,276 + HER17_RS05620 0.45 +0.2
1,240,276 + HER17_RS05620 0.45 +0.3
1,240,276 + HER17_RS05620 0.45 +1.0
1,240,306 + HER17_RS05620 0.50 -1.2
1,240,368 - HER17_RS05620 0.60 +0.2
1,240,471 + HER17_RS05620 0.78 +0.8
1,240,472 - HER17_RS05620 0.78 -0.4
1,240,477 - HER17_RS05620 0.79 -1.8
1,240,497 + HER17_RS05620 0.82 +0.5
1,240,497 + HER17_RS05620 0.82 +0.9
1,240,497 + HER17_RS05620 0.82 +0.3
1,240,497 + HER17_RS05620 0.82 +0.5
1,240,498 - HER17_RS05620 0.82 -0.0
1,240,543 - HER17_RS05620 0.90 +1.0
1,240,577 + -0.1
1,240,578 - +0.6
1,240,578 - +0.4
1,240,633 + +0.1
1,240,639 - +0.6
1,240,715 + -0.0
1,240,716 - -0.5
1,240,716 - +1.0
1,240,716 - +1.4
1,240,766 - +0.8
1,240,805 - +0.0
1,240,847 - -0.1
1,240,875 + +1.3
1,240,876 - -0.8
1,240,876 - +0.2
1,240,876 - +0.1
1,240,890 + HER17_RS05625 0.10 +0.0
1,240,893 + HER17_RS05625 0.11 -1.0
1,240,893 + HER17_RS05625 0.11 -1.5
1,240,894 - HER17_RS05625 0.11 -1.0
1,240,894 - HER17_RS05625 0.11 -0.2
1,240,894 - HER17_RS05625 0.11 -0.2
1,240,894 - HER17_RS05625 0.11 -0.5
1,240,894 - HER17_RS05625 0.11 -0.3
1,240,906 + HER17_RS05625 0.11 +1.1
1,240,952 + HER17_RS05625 0.15 -0.4
1,240,991 - HER17_RS05625 0.17 +0.0
1,241,078 + HER17_RS05625 0.23 +0.1
1,241,078 + HER17_RS05625 0.23 -0.3
1,241,079 - HER17_RS05625 0.23 +0.3
1,241,120 + HER17_RS05625 0.26 -0.0
1,241,146 - HER17_RS05625 0.28 +0.7
1,241,189 + HER17_RS05625 0.31 +0.2
1,241,254 + HER17_RS05625 0.35 +0.6
1,241,254 + HER17_RS05625 0.35 +0.5
1,241,319 + HER17_RS05625 0.40 +0.0
1,241,369 + HER17_RS05625 0.43 +0.2
1,241,597 - HER17_RS05625 0.59 -0.2
1,241,610 + HER17_RS05625 0.60 -0.7
1,241,612 + HER17_RS05625 0.60 -0.5
1,241,612 + HER17_RS05625 0.60 -0.3
1,241,684 + HER17_RS05625 0.65 -0.8
1,241,684 + HER17_RS05625 0.65 +0.7
1,241,684 + HER17_RS05625 0.65 -0.1
1,241,684 + HER17_RS05625 0.65 +0.2
1,241,684 + HER17_RS05625 0.65 +0.1
1,241,685 - HER17_RS05625 0.65 +0.7
1,241,685 - HER17_RS05625 0.65 -0.9
1,241,685 - HER17_RS05625 0.65 +1.0
1,241,847 - HER17_RS05625 0.76 +1.4
1,242,060 - +0.2
1,242,061 + +0.2
1,242,061 + +0.9
1,242,062 - +0.3
1,242,080 - +1.5
1,242,126 - -0.1
1,242,126 - -0.0
1,242,131 + -0.1
1,242,132 - -0.7
1,242,197 + +0.7
1,242,197 + -1.5
1,242,198 - -0.2
1,242,203 + +0.4
1,242,203 + +0.1
1,242,203 + +0.2
1,242,204 - +0.0
1,242,204 - +0.4
1,242,204 - +0.8
1,242,216 - -0.3
1,242,272 + -1.5
1,242,272 + -0.1
1,242,272 + -2.0
1,242,273 - -0.3
1,242,273 - +0.6
1,242,273 - +0.4
1,242,275 + -0.4
1,242,275 + -0.1
1,242,275 + -1.1
1,242,383 + HER17_RS05630 0.27 +0.2
1,242,384 - HER17_RS05630 0.27 -0.4
1,242,384 - HER17_RS05630 0.27 +0.4
1,242,384 - HER17_RS05630 0.27 -0.3
1,242,501 + HER17_RS05630 0.46 -0.2
1,242,501 + HER17_RS05630 0.46 +0.2
1,242,502 - HER17_RS05630 0.46 +0.0
1,242,628 + HER17_RS05630 0.66 +0.0
1,242,629 - HER17_RS05630 0.67 -1.0
1,242,629 - HER17_RS05630 0.67 +0.4
1,242,629 - HER17_RS05630 0.67 -0.4
1,242,629 - HER17_RS05630 0.67 -0.0
1,242,629 - HER17_RS05630 0.67 +0.3
1,242,630 + HER17_RS05630 0.67 -0.4
1,242,630 + HER17_RS05630 0.67 -0.1
1,242,630 + HER17_RS05630 0.67 +0.1
1,242,631 - HER17_RS05630 0.67 +0.6
1,242,631 - HER17_RS05630 0.67 +0.3
1,242,690 + HER17_RS05630 0.76 -2.0
1,242,691 - HER17_RS05630 0.76 +0.1
1,242,729 + HER17_RS05630 0.83 +0.3
1,242,863 + -0.4
1,242,864 - +0.5
1,242,870 - +1.2
1,242,870 - -0.1
1,242,870 - -0.2
1,242,885 - -0.6
1,242,885 - +0.6
1,242,928 + -0.5
1,242,990 + -0.5

Or see this region's nucleotide sequence