Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04230 and HER17_RS04235 are separated by 289 nucleotides HER17_RS04235 and HER17_RS04240 overlap by 1 nucleotides
HER17_RS04230: HER17_RS04230 - PilZ domain-containing protein, at 965,828 to 967,552
_RS04230
HER17_RS04235: HER17_RS04235 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 967,842 to 969,671
_RS04235
HER17_RS04240: HER17_RS04240 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 969,671 to 971,404
_RS04240
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 966.882 kb on + strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.933 kb on + strand, within HER17_RS04230 at 966.933 kb on + strand, within HER17_RS04230 at 966.994 kb on + strand, within HER17_RS04230 at 966.994 kb on + strand, within HER17_RS04230 at 967.053 kb on + strand, within HER17_RS04230 at 967.062 kb on + strand, within HER17_RS04230 at 967.062 kb on + strand, within HER17_RS04230 at 967.063 kb on - strand, within HER17_RS04230 at 967.205 kb on - strand, within HER17_RS04230 at 967.228 kb on + strand, within HER17_RS04230 at 967.228 kb on + strand, within HER17_RS04230 at 967.268 kb on + strand, within HER17_RS04230 at 967.269 kb on - strand, within HER17_RS04230 at 967.286 kb on + strand, within HER17_RS04230 at 967.286 kb on + strand, within HER17_RS04230 at 967.287 kb on - strand, within HER17_RS04230 at 967.287 kb on - strand, within HER17_RS04230 at 967.287 kb on - strand, within HER17_RS04230 at 967.291 kb on + strand, within HER17_RS04230 at 967.292 kb on - strand, within HER17_RS04230 at 967.310 kb on + strand, within HER17_RS04230 at 967.310 kb on + strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.355 kb on + strand, within HER17_RS04230 at 967.387 kb on + strand at 967.393 kb on + strand at 967.448 kb on - strand at 967.453 kb on + strand at 967.664 kb on + strand at 967.694 kb on + strand at 967.695 kb on - strand at 967.711 kb on + strand at 967.711 kb on + strand at 967.711 kb on + strand at 967.711 kb on + strand at 967.714 kb on + strand at 967.731 kb on + strand at 967.738 kb on + strand at 967.778 kb on + strand at 967.778 kb on + strand at 967.779 kb on - strand at 967.796 kb on + strand at 967.797 kb on - strand at 967.847 kb on + strand at 967.848 kb on - strand at 967.895 kb on - strand at 967.956 kb on + strand at 968.047 kb on + strand, within HER17_RS04235 at 968.167 kb on - strand, within HER17_RS04235 at 968.337 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.865 kb on + strand, within HER17_RS04235 at 968.865 kb on + strand, within HER17_RS04235 at 968.866 kb on - strand, within HER17_RS04235 at 968.958 kb on - strand, within HER17_RS04235 at 969.033 kb on + strand, within HER17_RS04235 at 969.034 kb on - strand, within HER17_RS04235 at 969.039 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.142 kb on - strand, within HER17_RS04235 at 969.201 kb on - strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.336 kb on - strand, within HER17_RS04235 at 969.347 kb on + strand, within HER17_RS04235 at 969.384 kb on + strand, within HER17_RS04235 at 969.385 kb on - strand, within HER17_RS04235 at 969.450 kb on + strand, within HER17_RS04235 at 969.451 kb on - strand, within HER17_RS04235 at 969.519 kb on + strand at 969.519 kb on + strand at 969.519 kb on + strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.542 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.652 kb on - strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.684 kb on - strand at 969.720 kb on + strand at 969.720 kb on + strand at 969.721 kb on - strand at 969.721 kb on - strand at 969.840 kb on + strand at 969.856 kb on + strand, within HER17_RS04240 at 969.856 kb on + strand, within HER17_RS04240 at 969.857 kb on - strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.861 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.018 kb on + strand, within HER17_RS04240 at 970.053 kb on - strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.159 kb on + strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.200 kb on - strand, within HER17_RS04240 at 970.250 kb on + strand, within HER17_RS04240 at 970.251 kb on - strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.515 kb on - strand, within HER17_RS04240 at 970.532 kb on - strand, within HER17_RS04240 at 970.595 kb on - strand, within HER17_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 966,882 + HER17_RS04230 0.61 +0.2 966,883 - HER17_RS04230 0.61 -0.2 966,883 - HER17_RS04230 0.61 +0.4 966,883 - HER17_RS04230 0.61 -0.2 966,883 - HER17_RS04230 0.61 +0.2 966,933 + HER17_RS04230 0.64 -1.2 966,933 + HER17_RS04230 0.64 -0.4 966,994 + HER17_RS04230 0.68 +0.5 966,994 + HER17_RS04230 0.68 +1.4 967,053 + HER17_RS04230 0.71 -0.0 967,062 + HER17_RS04230 0.72 +0.1 967,062 + HER17_RS04230 0.72 +1.4 967,063 - HER17_RS04230 0.72 -1.0 967,205 - HER17_RS04230 0.80 +0.6 967,228 + HER17_RS04230 0.81 -1.0 967,228 + HER17_RS04230 0.81 +0.3 967,268 + HER17_RS04230 0.83 +0.3 967,269 - HER17_RS04230 0.84 +0.5 967,286 + HER17_RS04230 0.85 +1.1 967,286 + HER17_RS04230 0.85 -0.1 967,287 - HER17_RS04230 0.85 -0.8 967,287 - HER17_RS04230 0.85 -0.2 967,287 - HER17_RS04230 0.85 -0.7 967,291 + HER17_RS04230 0.85 +0.1 967,292 - HER17_RS04230 0.85 +0.2 967,310 + HER17_RS04230 0.86 -0.4 967,310 + HER17_RS04230 0.86 +0.6 967,311 - HER17_RS04230 0.86 +0.4 967,311 - HER17_RS04230 0.86 -0.7 967,311 - HER17_RS04230 0.86 -0.1 967,311 - HER17_RS04230 0.86 +0.6 967,355 + HER17_RS04230 0.89 -0.0 967,387 + +0.4 967,393 + +0.0 967,448 - -0.5 967,453 + -0.6 967,664 + +0.0 967,694 + -1.1 967,695 - +0.2 967,711 + -0.2 967,711 + -0.1 967,711 + -0.3 967,711 + -0.3 967,714 + +0.6 967,731 + -0.4 967,738 + +0.3 967,778 + +0.0 967,778 + +0.6 967,779 - -0.8 967,796 + +0.4 967,797 - -0.0 967,847 + -1.1 967,848 - -0.4 967,895 - -0.5 967,956 + -1.2 968,047 + HER17_RS04235 0.11 -0.6 968,167 - HER17_RS04235 0.18 -1.9 968,337 + HER17_RS04235 0.27 -0.5 968,389 + HER17_RS04235 0.30 -0.8 968,389 + HER17_RS04235 0.30 -1.1 968,389 + HER17_RS04235 0.30 +0.2 968,389 + HER17_RS04235 0.30 -1.0 968,865 + HER17_RS04235 0.56 -0.5 968,865 + HER17_RS04235 0.56 -1.1 968,866 - HER17_RS04235 0.56 -1.9 968,958 - HER17_RS04235 0.61 -1.8 969,033 + HER17_RS04235 0.65 -1.6 969,034 - HER17_RS04235 0.65 +0.1 969,039 - HER17_RS04235 0.65 -0.3 969,106 - HER17_RS04235 0.69 -1.9 969,106 - HER17_RS04235 0.69 -1.6 969,142 - HER17_RS04235 0.71 -0.4 969,201 - HER17_RS04235 0.74 -0.5 969,281 + HER17_RS04235 0.79 -0.7 969,281 + HER17_RS04235 0.79 -1.3 969,336 - HER17_RS04235 0.82 -0.3 969,347 + HER17_RS04235 0.82 -0.2 969,384 + HER17_RS04235 0.84 -0.9 969,385 - HER17_RS04235 0.84 -1.4 969,450 + HER17_RS04235 0.88 -1.5 969,451 - HER17_RS04235 0.88 +0.1 969,519 + -1.4 969,519 + +0.2 969,519 + +0.1 969,520 - -1.1 969,520 - -2.0 969,520 - -0.9 969,520 - -1.6 969,520 - -2.0 969,520 - -1.0 969,520 - -2.6 969,520 - -0.9 969,520 - -1.7 969,542 + -1.0 969,580 + -0.7 969,580 + -0.6 969,580 + -0.1 969,652 - -1.3 969,666 + -0.1 969,666 + -1.4 969,666 + +0.1 969,666 + -1.1 969,666 + -1.2 969,667 - -1.2 969,667 - -0.5 969,667 - -1.6 969,667 - -2.5 969,684 - -1.6 969,720 + -0.7 969,720 + -0.7 969,721 - -0.7 969,721 - -0.2 969,840 + -0.9 969,856 + HER17_RS04240 0.11 -0.3 969,856 + HER17_RS04240 0.11 -0.6 969,857 - HER17_RS04240 0.11 -0.6 969,860 + HER17_RS04240 0.11 -0.4 969,860 + HER17_RS04240 0.11 +0.6 969,861 - HER17_RS04240 0.11 -0.7 970,014 - HER17_RS04240 0.20 -0.1 970,014 - HER17_RS04240 0.20 -1.1 970,018 + HER17_RS04240 0.20 -1.5 970,053 - HER17_RS04240 0.22 -1.3 970,102 + HER17_RS04240 0.25 -0.3 970,102 + HER17_RS04240 0.25 -1.0 970,103 - HER17_RS04240 0.25 -0.6 970,103 - HER17_RS04240 0.25 -0.7 970,103 - HER17_RS04240 0.25 -1.0 970,159 + HER17_RS04240 0.28 -0.9 970,160 - HER17_RS04240 0.28 -0.8 970,160 - HER17_RS04240 0.28 -2.4 970,160 - HER17_RS04240 0.28 -1.1 970,199 + HER17_RS04240 0.30 +0.2 970,199 + HER17_RS04240 0.30 +0.1 970,199 + HER17_RS04240 0.30 -0.7 970,200 - HER17_RS04240 0.31 -1.4 970,250 + HER17_RS04240 0.33 -1.9 970,251 - HER17_RS04240 0.33 -1.5 970,319 + HER17_RS04240 0.37 -0.8 970,319 + HER17_RS04240 0.37 -0.4 970,320 - HER17_RS04240 0.37 -0.8 970,320 - HER17_RS04240 0.37 -1.0 970,514 + HER17_RS04240 0.49 -0.9 970,514 + HER17_RS04240 0.49 -1.0 970,515 - HER17_RS04240 0.49 +0.1 970,532 - HER17_RS04240 0.50 -1.0 970,595 - HER17_RS04240 0.53 -1.5
Or see this region's nucleotide sequence