Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS01915 and HER17_RS01920 are separated by 373 nucleotides HER17_RS01920 and HER17_RS01925 are separated by 38 nucleotides HER17_RS01925 and HER17_RS01930 are separated by 125 nucleotides HER17_RS01930 and HER17_RS01935 overlap by 4 nucleotides
HER17_RS01915: HER17_RS01915 - cAMP-activated global transcriptional regulator CRP, at 450,090 to 450,722
_RS01915
HER17_RS01920: HER17_RS01920 - OsmC family protein, at 451,096 to 451,503
_RS01920
HER17_RS01925: HER17_RS01925 - phosphoribulokinase, at 451,542 to 452,411
_RS01925
HER17_RS01930: HER17_RS01930 - YheU family protein, at 452,537 to 452,773
_RS01930
HER17_RS01935: HER17_RS01935 - hydrolase, at 452,770 to 453,810
_RS01935
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 450.760 kb on - strand at 450.792 kb on - strand at 450.840 kb on - strand at 450.842 kb on - strand at 450.842 kb on - strand at 450.856 kb on - strand at 450.856 kb on - strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.905 kb on + strand at 450.906 kb on - strand at 450.906 kb on - strand at 450.908 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand at 450.920 kb on - strand at 450.959 kb on + strand at 450.960 kb on - strand at 450.976 kb on - strand at 451.214 kb on + strand, within HER17_RS01920 at 451.341 kb on + strand, within HER17_RS01920 at 451.341 kb on + strand, within HER17_RS01920 at 451.429 kb on + strand, within HER17_RS01920 at 451.430 kb on - strand, within HER17_RS01920 at 451.430 kb on - strand, within HER17_RS01920 at 451.430 kb on - strand, within HER17_RS01920 at 451.488 kb on + strand at 451.501 kb on + strand at 451.593 kb on + strand at 451.593 kb on + strand at 451.593 kb on + strand at 451.593 kb on + strand at 451.594 kb on - strand at 451.594 kb on - strand at 451.652 kb on + strand, within HER17_RS01925 at 451.652 kb on + strand, within HER17_RS01925 at 451.653 kb on - strand, within HER17_RS01925 at 451.681 kb on + strand, within HER17_RS01925 at 451.681 kb on + strand, within HER17_RS01925 at 451.681 kb on + strand, within HER17_RS01925 at 451.687 kb on + strand, within HER17_RS01925 at 451.693 kb on + strand, within HER17_RS01925 at 451.694 kb on + strand, within HER17_RS01925 at 451.694 kb on + strand, within HER17_RS01925 at 451.695 kb on - strand, within HER17_RS01925 at 451.784 kb on + strand, within HER17_RS01925 at 451.833 kb on - strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.834 kb on + strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.835 kb on - strand, within HER17_RS01925 at 451.843 kb on + strand, within HER17_RS01925 at 451.843 kb on + strand, within HER17_RS01925 at 451.844 kb on - strand, within HER17_RS01925 at 451.844 kb on - strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.026 kb on + strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.027 kb on - strand, within HER17_RS01925 at 452.091 kb on - strand, within HER17_RS01925 at 452.091 kb on - strand, within HER17_RS01925 at 452.093 kb on - strand, within HER17_RS01925 at 452.110 kb on + strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.111 kb on - strand, within HER17_RS01925 at 452.114 kb on + strand, within HER17_RS01925 at 452.115 kb on - strand, within HER17_RS01925 at 452.123 kb on - strand, within HER17_RS01925 at 452.123 kb on - strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.126 kb on + strand, within HER17_RS01925 at 452.127 kb on - strand, within HER17_RS01925 at 452.155 kb on + strand, within HER17_RS01925 at 452.210 kb on - strand, within HER17_RS01925 at 452.210 kb on - strand, within HER17_RS01925 at 452.270 kb on + strand, within HER17_RS01925 at 452.271 kb on - strand, within HER17_RS01925 at 452.272 kb on + strand, within HER17_RS01925 at 452.272 kb on + strand, within HER17_RS01925 at 452.273 kb on - strand, within HER17_RS01925 at 452.411 kb on + strand at 452.411 kb on + strand at 452.412 kb on - strand at 452.481 kb on + strand at 452.481 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.485 kb on + strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.486 kb on - strand at 452.489 kb on + strand at 452.499 kb on - strand at 452.542 kb on - strand at 452.584 kb on + strand, within HER17_RS01930 at 452.584 kb on + strand, within HER17_RS01930 at 452.585 kb on - strand, within HER17_RS01930 at 452.585 kb on - strand, within HER17_RS01930 at 452.600 kb on + strand, within HER17_RS01930 at 452.600 kb on + strand, within HER17_RS01930 at 452.768 kb on - strand at 452.777 kb on - strand at 452.958 kb on + strand, within HER17_RS01935 at 452.959 kb on - strand, within HER17_RS01935 at 452.959 kb on - strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.961 kb on + strand, within HER17_RS01935 at 452.962 kb on - strand, within HER17_RS01935 at 452.968 kb on + strand, within HER17_RS01935 at 453.042 kb on + strand, within HER17_RS01935 at 453.046 kb on + strand, within HER17_RS01935 at 453.047 kb on - strand, within HER17_RS01935 at 453.047 kb on - strand, within HER17_RS01935 at 453.056 kb on - strand, within HER17_RS01935 at 453.058 kb on + strand, within HER17_RS01935 at 453.058 kb on + strand, within HER17_RS01935 at 453.059 kb on - strand, within HER17_RS01935 at 453.073 kb on - strand, within HER17_RS01935 at 453.083 kb on + strand, within HER17_RS01935 at 453.086 kb on + strand, within HER17_RS01935 at 453.087 kb on - strand, within HER17_RS01935 at 453.123 kb on + strand, within HER17_RS01935 at 453.123 kb on + strand, within HER17_RS01935 at 453.124 kb on - strand, within HER17_RS01935 at 453.124 kb on - strand, within HER17_RS01935 at 453.146 kb on - strand, within HER17_RS01935 at 453.245 kb on + strand, within HER17_RS01935 at 453.246 kb on - strand, within HER17_RS01935 at 453.255 kb on - strand, within HER17_RS01935 at 453.289 kb on - strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.334 kb on + strand, within HER17_RS01935 at 453.335 kb on - strand, within HER17_RS01935 at 453.339 kb on + strand, within HER17_RS01935
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 450,760 - +0.5 450,792 - -0.4 450,840 - -1.4 450,842 - +0.7 450,842 - +0.9 450,856 - +0.6 450,856 - -1.4 450,905 + +0.3 450,905 + -2.1 450,905 + -3.6 450,906 - +0.2 450,906 - -0.2 450,908 - +0.5 450,920 - -0.2 450,920 - +0.5 450,920 - +0.7 450,959 + +0.6 450,960 - +0.3 450,976 - +0.8 451,214 + HER17_RS01920 0.29 +1.6 451,341 + HER17_RS01920 0.60 -0.3 451,341 + HER17_RS01920 0.60 +0.9 451,429 + HER17_RS01920 0.82 -1.4 451,430 - HER17_RS01920 0.82 +0.8 451,430 - HER17_RS01920 0.82 +0.2 451,430 - HER17_RS01920 0.82 -0.1 451,488 + +0.7 451,501 + -0.5 451,593 + -0.8 451,593 + +0.6 451,593 + +0.3 451,593 + +0.3 451,594 - -1.4 451,594 - -0.4 451,652 + HER17_RS01925 0.13 -3.2 451,652 + HER17_RS01925 0.13 -0.0 451,653 - HER17_RS01925 0.13 +0.9 451,681 + HER17_RS01925 0.16 +0.0 451,681 + HER17_RS01925 0.16 +0.1 451,681 + HER17_RS01925 0.16 +0.6 451,687 + HER17_RS01925 0.17 +0.8 451,693 + HER17_RS01925 0.17 +0.5 451,694 + HER17_RS01925 0.17 -0.9 451,694 + HER17_RS01925 0.17 -1.0 451,695 - HER17_RS01925 0.18 +0.8 451,784 + HER17_RS01925 0.28 -0.7 451,833 - HER17_RS01925 0.33 +0.1 451,834 + HER17_RS01925 0.34 -0.0 451,834 + HER17_RS01925 0.34 -0.1 451,834 + HER17_RS01925 0.34 +0.1 451,834 + HER17_RS01925 0.34 -0.7 451,834 + HER17_RS01925 0.34 +0.6 451,835 - HER17_RS01925 0.34 -0.1 451,835 - HER17_RS01925 0.34 -0.3 451,835 - HER17_RS01925 0.34 -0.8 451,835 - HER17_RS01925 0.34 +0.0 451,835 - HER17_RS01925 0.34 +0.0 451,835 - HER17_RS01925 0.34 -0.3 451,835 - HER17_RS01925 0.34 +0.5 451,835 - HER17_RS01925 0.34 +0.3 451,835 - HER17_RS01925 0.34 +0.4 451,843 + HER17_RS01925 0.35 +0.4 451,843 + HER17_RS01925 0.35 -0.3 451,844 - HER17_RS01925 0.35 -0.0 451,844 - HER17_RS01925 0.35 +0.6 452,026 + HER17_RS01925 0.56 -0.5 452,026 + HER17_RS01925 0.56 -0.7 452,026 + HER17_RS01925 0.56 +0.7 452,026 + HER17_RS01925 0.56 +0.5 452,026 + HER17_RS01925 0.56 +0.3 452,027 - HER17_RS01925 0.56 -0.0 452,027 - HER17_RS01925 0.56 +0.3 452,027 - HER17_RS01925 0.56 -0.4 452,091 - HER17_RS01925 0.63 +0.7 452,091 - HER17_RS01925 0.63 +0.1 452,093 - HER17_RS01925 0.63 -2.2 452,110 + HER17_RS01925 0.65 +1.2 452,111 - HER17_RS01925 0.65 +0.5 452,111 - HER17_RS01925 0.65 +0.0 452,111 - HER17_RS01925 0.65 +0.5 452,111 - HER17_RS01925 0.65 +0.8 452,111 - HER17_RS01925 0.65 +0.3 452,114 + HER17_RS01925 0.66 +0.1 452,115 - HER17_RS01925 0.66 -1.7 452,123 - HER17_RS01925 0.67 -0.5 452,123 - HER17_RS01925 0.67 +0.6 452,126 + HER17_RS01925 0.67 +1.2 452,126 + HER17_RS01925 0.67 -1.8 452,126 + HER17_RS01925 0.67 -0.1 452,127 - HER17_RS01925 0.67 +0.4 452,155 + HER17_RS01925 0.70 +0.4 452,210 - HER17_RS01925 0.77 +0.7 452,210 - HER17_RS01925 0.77 +0.0 452,270 + HER17_RS01925 0.84 -0.1 452,271 - HER17_RS01925 0.84 +0.1 452,272 + HER17_RS01925 0.84 -0.9 452,272 + HER17_RS01925 0.84 +0.5 452,273 - HER17_RS01925 0.84 +0.0 452,411 + +0.2 452,411 + -0.3 452,412 - -0.7 452,481 + +0.6 452,481 + +0.5 452,485 + -1.6 452,485 + +0.2 452,485 + +1.2 452,485 + -0.3 452,485 + -0.1 452,485 + -0.1 452,485 + +0.5 452,485 + +0.5 452,486 - +0.2 452,486 - -0.1 452,486 - +0.2 452,486 - -0.1 452,486 - -1.1 452,486 - +0.6 452,486 - +0.1 452,486 - +0.3 452,489 + +0.1 452,499 - +0.1 452,542 - -0.2 452,584 + HER17_RS01930 0.20 +0.9 452,584 + HER17_RS01930 0.20 -0.4 452,585 - HER17_RS01930 0.20 -0.5 452,585 - HER17_RS01930 0.20 +0.1 452,600 + HER17_RS01930 0.27 -3.2 452,600 + HER17_RS01930 0.27 -0.1 452,768 - -2.5 452,777 - -0.7 452,958 + HER17_RS01935 0.18 +0.8 452,959 - HER17_RS01935 0.18 +0.6 452,959 - HER17_RS01935 0.18 -1.0 452,961 + HER17_RS01935 0.18 +1.6 452,961 + HER17_RS01935 0.18 +0.2 452,961 + HER17_RS01935 0.18 -0.7 452,962 - HER17_RS01935 0.18 +0.4 452,968 + HER17_RS01935 0.19 +1.0 453,042 + HER17_RS01935 0.26 -1.2 453,046 + HER17_RS01935 0.27 +1.6 453,047 - HER17_RS01935 0.27 -0.1 453,047 - HER17_RS01935 0.27 +0.3 453,056 - HER17_RS01935 0.27 +0.2 453,058 + HER17_RS01935 0.28 +0.1 453,058 + HER17_RS01935 0.28 +0.8 453,059 - HER17_RS01935 0.28 -0.6 453,073 - HER17_RS01935 0.29 -0.3 453,083 + HER17_RS01935 0.30 -0.0 453,086 + HER17_RS01935 0.30 +0.6 453,087 - HER17_RS01935 0.30 -1.7 453,123 + HER17_RS01935 0.34 -0.1 453,123 + HER17_RS01935 0.34 -0.4 453,124 - HER17_RS01935 0.34 -0.5 453,124 - HER17_RS01935 0.34 +0.3 453,146 - HER17_RS01935 0.36 -0.2 453,245 + HER17_RS01935 0.46 +0.6 453,246 - HER17_RS01935 0.46 +1.0 453,255 - HER17_RS01935 0.47 +0.2 453,289 - HER17_RS01935 0.50 +0.2 453,334 + HER17_RS01935 0.54 +0.5 453,334 + HER17_RS01935 0.54 -0.1 453,334 + HER17_RS01935 0.54 +0.7 453,335 - HER17_RS01935 0.54 +0.3 453,339 + HER17_RS01935 0.55 +0.0
Or see this region's nucleotide sequence