Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01875

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01865 and HER17_RS01870 are separated by 34 nucleotidesHER17_RS01870 and HER17_RS01875 are separated by 44 nucleotidesHER17_RS01875 and HER17_RS01880 are separated by 206 nucleotidesHER17_RS01880 and HER17_RS01885 are separated by 80 nucleotides HER17_RS01865: HER17_RS01865 - ABC transporter permease, at 437,696 to 438,577 _RS01865 HER17_RS01870: HER17_RS01870 - ABC transporter ATP-binding protein, at 438,612 to 439,436 _RS01870 HER17_RS01875: HER17_RS01875 - ABC transporter ATP-binding protein, at 439,481 to 440,257 _RS01875 HER17_RS01880: HER17_RS01880 - peptidylprolyl isomerase A, at 440,464 to 441,048 _RS01880 HER17_RS01885: HER17_RS01885 - pectate lyase, at 441,129 to 442,406 _RS01885 Position (kb) 439 440 441Strain fitness (log2 ratio) -2 -1 0 1 2at 438.481 kb on - strand, within HER17_RS01865at 438.483 kb on + strand, within HER17_RS01865at 438.483 kb on + strand, within HER17_RS01865at 438.483 kb on + strand, within HER17_RS01865at 438.483 kb on + strand, within HER17_RS01865at 438.484 kb on - strand, within HER17_RS01865at 438.484 kb on - strand, within HER17_RS01865at 438.487 kb on + strand, within HER17_RS01865at 438.487 kb on + strand, within HER17_RS01865at 438.487 kb on + strand, within HER17_RS01865at 438.488 kb on - strand, within HER17_RS01865at 438.488 kb on - strand, within HER17_RS01865at 438.511 kb on + strandat 438.511 kb on + strandat 438.547 kb on - strandat 438.575 kb on + strandat 438.575 kb on + strandat 438.789 kb on - strand, within HER17_RS01870at 438.881 kb on + strand, within HER17_RS01870at 438.946 kb on - strand, within HER17_RS01870at 439.004 kb on - strand, within HER17_RS01870at 439.004 kb on - strand, within HER17_RS01870at 439.004 kb on - strand, within HER17_RS01870at 439.012 kb on + strand, within HER17_RS01870at 439.013 kb on - strand, within HER17_RS01870at 439.016 kb on + strand, within HER17_RS01870at 439.016 kb on + strand, within HER17_RS01870at 439.017 kb on - strand, within HER17_RS01870at 439.017 kb on - strand, within HER17_RS01870at 439.017 kb on - strand, within HER17_RS01870at 439.037 kb on - strand, within HER17_RS01870at 439.038 kb on + strand, within HER17_RS01870at 439.038 kb on + strand, within HER17_RS01870at 439.039 kb on - strand, within HER17_RS01870at 439.039 kb on - strand, within HER17_RS01870at 439.048 kb on - strand, within HER17_RS01870at 439.249 kb on + strand, within HER17_RS01870at 439.250 kb on - strand, within HER17_RS01870at 439.253 kb on + strand, within HER17_RS01870at 439.253 kb on + strand, within HER17_RS01870at 439.253 kb on + strand, within HER17_RS01870at 439.253 kb on + strand, within HER17_RS01870at 439.253 kb on + strand, within HER17_RS01870at 439.253 kb on + strand, within HER17_RS01870at 439.254 kb on - strand, within HER17_RS01870at 439.254 kb on - strand, within HER17_RS01870at 439.254 kb on - strand, within HER17_RS01870at 439.281 kb on + strand, within HER17_RS01870at 439.281 kb on + strand, within HER17_RS01870at 439.281 kb on + strand, within HER17_RS01870at 439.282 kb on - strand, within HER17_RS01870at 439.282 kb on - strand, within HER17_RS01870at 439.304 kb on + strand, within HER17_RS01870at 439.304 kb on + strand, within HER17_RS01870at 439.304 kb on + strand, within HER17_RS01870at 439.304 kb on + strand, within HER17_RS01870at 439.304 kb on + strand, within HER17_RS01870at 439.341 kb on + strand, within HER17_RS01870at 439.341 kb on + strand, within HER17_RS01870at 439.342 kb on - strand, within HER17_RS01870at 439.495 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.576 kb on + strand, within HER17_RS01875at 439.621 kb on - strand, within HER17_RS01875at 439.641 kb on + strand, within HER17_RS01875at 439.641 kb on + strand, within HER17_RS01875at 439.641 kb on + strand, within HER17_RS01875at 439.642 kb on - strand, within HER17_RS01875at 439.645 kb on + strand, within HER17_RS01875at 439.645 kb on + strand, within HER17_RS01875at 439.645 kb on + strand, within HER17_RS01875at 439.646 kb on - strand, within HER17_RS01875at 439.646 kb on - strand, within HER17_RS01875at 439.646 kb on - strand, within HER17_RS01875at 439.669 kb on + strand, within HER17_RS01875at 439.669 kb on + strand, within HER17_RS01875at 439.670 kb on - strand, within HER17_RS01875at 439.768 kb on + strand, within HER17_RS01875at 439.774 kb on - strand, within HER17_RS01875at 440.055 kb on - strand, within HER17_RS01875at 440.121 kb on - strand, within HER17_RS01875at 440.121 kb on - strand, within HER17_RS01875at 440.121 kb on - strand, within HER17_RS01875at 440.125 kb on + strand, within HER17_RS01875at 440.125 kb on + strand, within HER17_RS01875at 440.130 kb on + strand, within HER17_RS01875at 440.131 kb on - strand, within HER17_RS01875at 440.184 kb on - strandat 440.216 kb on + strandat 440.255 kb on + strandat 440.256 kb on - strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.260 kb on - strandat 440.260 kb on - strandat 440.263 kb on + strandat 440.263 kb on + strandat 440.264 kb on - strandat 440.322 kb on + strandat 440.369 kb on + strandat 440.371 kb on + strandat 440.372 kb on - strandat 440.372 kb on - strandat 440.416 kb on + strandat 440.417 kb on - strandat 440.425 kb on + strandat 440.475 kb on + strandat 440.475 kb on + strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.499 kb on + strandat 440.639 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.695 kb on - strand, within HER17_RS01880at 440.695 kb on - strand, within HER17_RS01880at 440.777 kb on + strand, within HER17_RS01880at 440.777 kb on + strand, within HER17_RS01880at 440.778 kb on - strand, within HER17_RS01880at 440.778 kb on - strand, within HER17_RS01880at 440.847 kb on + strand, within HER17_RS01880at 440.847 kb on + strand, within HER17_RS01880at 440.847 kb on + strand, within HER17_RS01880at 440.939 kb on + strand, within HER17_RS01880at 440.943 kb on + strand, within HER17_RS01880at 440.943 kb on + strand, within HER17_RS01880at 440.943 kb on + strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 441.046 kb on + strandat 441.046 kb on + strandat 441.047 kb on - strandat 441.047 kb on - strandat 441.051 kb on - strandat 441.051 kb on - strandat 441.051 kb on - strandat 441.051 kb on - strandat 441.069 kb on - strandat 441.104 kb on + strandat 441.105 kb on - strandat 441.116 kb on - strandat 441.116 kb on - strandat 441.130 kb on + strandat 441.144 kb on - strandat 441.184 kb on - strandat 441.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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438,481 - HER17_RS01865 0.89 -0.1
438,483 + HER17_RS01865 0.89 +0.1
438,483 + HER17_RS01865 0.89 +0.4
438,483 + HER17_RS01865 0.89 +1.0
438,483 + HER17_RS01865 0.89 -0.1
438,484 - HER17_RS01865 0.89 -1.6
438,484 - HER17_RS01865 0.89 -0.4
438,487 + HER17_RS01865 0.90 -0.3
438,487 + HER17_RS01865 0.90 -0.4
438,487 + HER17_RS01865 0.90 +0.3
438,488 - HER17_RS01865 0.90 -0.1
438,488 - HER17_RS01865 0.90 -0.9
438,511 + -0.7
438,511 + +0.6
438,547 - +1.1
438,575 + +0.1
438,575 + -0.0
438,789 - HER17_RS01870 0.21 +0.6
438,881 + HER17_RS01870 0.33 -0.9
438,946 - HER17_RS01870 0.40 -0.4
439,004 - HER17_RS01870 0.48 +0.8
439,004 - HER17_RS01870 0.48 +0.1
439,004 - HER17_RS01870 0.48 -0.2
439,012 + HER17_RS01870 0.48 +0.6
439,013 - HER17_RS01870 0.49 +0.6
439,016 + HER17_RS01870 0.49 -1.2
439,016 + HER17_RS01870 0.49 +1.2
439,017 - HER17_RS01870 0.49 -0.2
439,017 - HER17_RS01870 0.49 +0.0
439,017 - HER17_RS01870 0.49 -0.3
439,037 - HER17_RS01870 0.52 +2.2
439,038 + HER17_RS01870 0.52 -1.9
439,038 + HER17_RS01870 0.52 +0.6
439,039 - HER17_RS01870 0.52 +0.8
439,039 - HER17_RS01870 0.52 -0.2
439,048 - HER17_RS01870 0.53 +1.0
439,249 + HER17_RS01870 0.77 +0.2
439,250 - HER17_RS01870 0.77 +2.5
439,253 + HER17_RS01870 0.78 -0.5
439,253 + HER17_RS01870 0.78 +0.6
439,253 + HER17_RS01870 0.78 +0.6
439,253 + HER17_RS01870 0.78 +0.1
439,253 + HER17_RS01870 0.78 +0.8
439,253 + HER17_RS01870 0.78 -0.2
439,254 - HER17_RS01870 0.78 +0.5
439,254 - HER17_RS01870 0.78 +0.7
439,254 - HER17_RS01870 0.78 -1.9
439,281 + HER17_RS01870 0.81 +0.0
439,281 + HER17_RS01870 0.81 +0.0
439,281 + HER17_RS01870 0.81 -0.4
439,282 - HER17_RS01870 0.81 +0.2
439,282 - HER17_RS01870 0.81 +0.9
439,304 + HER17_RS01870 0.84 -0.9
439,304 + HER17_RS01870 0.84 -0.5
439,304 + HER17_RS01870 0.84 +0.0
439,304 + HER17_RS01870 0.84 +0.5
439,304 + HER17_RS01870 0.84 -0.2
439,341 + HER17_RS01870 0.88 -0.2
439,341 + HER17_RS01870 0.88 +0.5
439,342 - HER17_RS01870 0.88 +0.0
439,495 + -0.5
439,544 + +0.8
439,544 + +0.1
439,544 + -0.3
439,544 + +0.6
439,544 + +0.6
439,544 + -0.6
439,544 + +0.9
439,545 - -0.4
439,545 - +0.3
439,545 - +0.6
439,545 - +0.2
439,545 - +1.8
439,545 - +0.4
439,545 - +0.0
439,545 - -0.2
439,576 + HER17_RS01875 0.12 +0.8
439,621 - HER17_RS01875 0.18 +0.4
439,641 + HER17_RS01875 0.21 +0.1
439,641 + HER17_RS01875 0.21 +0.0
439,641 + HER17_RS01875 0.21 +0.7
439,642 - HER17_RS01875 0.21 -0.2
439,645 + HER17_RS01875 0.21 -0.4
439,645 + HER17_RS01875 0.21 -0.3
439,645 + HER17_RS01875 0.21 +0.3
439,646 - HER17_RS01875 0.21 -0.2
439,646 - HER17_RS01875 0.21 +0.6
439,646 - HER17_RS01875 0.21 +0.5
439,669 + HER17_RS01875 0.24 -0.7
439,669 + HER17_RS01875 0.24 +0.4
439,670 - HER17_RS01875 0.24 -0.4
439,768 + HER17_RS01875 0.37 +0.3
439,774 - HER17_RS01875 0.38 +0.3
440,055 - HER17_RS01875 0.74 -0.5
440,121 - HER17_RS01875 0.82 +0.7
440,121 - HER17_RS01875 0.82 -1.7
440,121 - HER17_RS01875 0.82 +0.5
440,125 + HER17_RS01875 0.83 -0.4
440,125 + HER17_RS01875 0.83 +0.7
440,130 + HER17_RS01875 0.84 -0.2
440,131 - HER17_RS01875 0.84 +0.8
440,184 - -0.3
440,216 + +0.0
440,255 + +0.3
440,256 - -0.3
440,259 + -0.1
440,259 + -0.1
440,259 + +0.7
440,259 + +0.8
440,259 + -0.1
440,259 + -1.0
440,260 - -0.4
440,260 - +0.7
440,263 + -0.2
440,263 + +0.4
440,264 - -1.4
440,322 + +0.3
440,369 + -0.8
440,371 + -1.1
440,372 - +2.1
440,372 - +0.8
440,416 + +2.1
440,417 - +1.0
440,425 + +1.3
440,475 + +0.3
440,475 + -0.5
440,476 - -0.3
440,476 - -0.1
440,476 - +0.6
440,476 - +0.7
440,476 - -0.2
440,476 - +1.6
440,499 + +0.6
440,639 - HER17_RS01880 0.30 +0.9
440,657 - HER17_RS01880 0.33 +0.0
440,657 - HER17_RS01880 0.33 +0.1
440,657 - HER17_RS01880 0.33 -2.1
440,657 - HER17_RS01880 0.33 +0.1
440,695 - HER17_RS01880 0.39 +0.4
440,695 - HER17_RS01880 0.39 -0.3
440,777 + HER17_RS01880 0.54 +0.0
440,777 + HER17_RS01880 0.54 -0.4
440,778 - HER17_RS01880 0.54 +0.4
440,778 - HER17_RS01880 0.54 +0.6
440,847 + HER17_RS01880 0.65 -0.2
440,847 + HER17_RS01880 0.65 +0.1
440,847 + HER17_RS01880 0.65 -0.1
440,939 + HER17_RS01880 0.81 -1.2
440,943 + HER17_RS01880 0.82 +0.0
440,943 + HER17_RS01880 0.82 +0.3
440,943 + HER17_RS01880 0.82 +0.2
440,944 - HER17_RS01880 0.82 +1.6
440,944 - HER17_RS01880 0.82 -0.4
440,944 - HER17_RS01880 0.82 -0.7
440,944 - HER17_RS01880 0.82 +0.5
440,944 - HER17_RS01880 0.82 +1.1
440,944 - HER17_RS01880 0.82 +0.5
441,046 + -1.3
441,046 + +1.0
441,047 - -0.6
441,047 - +0.4
441,051 - -0.4
441,051 - -0.7
441,051 - -0.3
441,051 - +0.6
441,069 - -0.3
441,104 + -0.2
441,105 - +0.8
441,116 - +0.1
441,116 - -2.2
441,130 + -0.2
441,144 - -0.3
441,184 - +0.2
441,242 + +0.0

Or see this region's nucleotide sequence