Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02950 and HER17_RS02955 are separated by 2 nucleotides HER17_RS02955 and HER17_RS02960 are separated by 12 nucleotides HER17_RS02960 and HER17_RS02965 overlap by 8 nucleotides
HER17_RS02950: HER17_RS02950 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 661,467 to 662,324
_RS02950
HER17_RS02955: HER17_RS02955 - Co2+/Mg2+ efflux protein ApaG, at 662,327 to 662,704
_RS02955
HER17_RS02960: HER17_RS02960 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 662,717 to 663,535
_RS02960
HER17_RS02965: HER17_RS02965 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 663,528 to 664,529
_RS02965
Position (kb) 662
663
664 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 661.745 kb on + strand, within HER17_RS02950 at 661.799 kb on + strand, within HER17_RS02950 at 661.850 kb on + strand, within HER17_RS02950 at 661.851 kb on - strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.882 kb on + strand, within HER17_RS02950 at 662.020 kb on - strand, within HER17_RS02950 at 662.084 kb on + strand, within HER17_RS02950 at 662.235 kb on - strand, within HER17_RS02950 at 662.268 kb on + strand at 662.314 kb on + strand at 662.319 kb on - strand at 662.324 kb on + strand at 662.324 kb on + strand at 662.325 kb on - strand at 662.325 kb on - strand at 662.328 kb on + strand at 662.328 kb on + strand at 662.329 kb on - strand at 662.329 kb on - strand at 662.329 kb on - strand at 662.347 kb on + strand at 662.404 kb on + strand, within HER17_RS02955 at 662.404 kb on + strand, within HER17_RS02955 at 662.405 kb on - strand, within HER17_RS02955 at 662.441 kb on + strand, within HER17_RS02955 at 662.442 kb on - strand, within HER17_RS02955 at 662.458 kb on + strand, within HER17_RS02955 at 662.459 kb on - strand, within HER17_RS02955 at 662.459 kb on - strand, within HER17_RS02955 at 662.459 kb on - strand, within HER17_RS02955 at 662.460 kb on + strand, within HER17_RS02955 at 662.461 kb on - strand, within HER17_RS02955 at 662.505 kb on - strand, within HER17_RS02955 at 662.605 kb on + strand, within HER17_RS02955 at 662.613 kb on + strand, within HER17_RS02955 at 662.614 kb on - strand, within HER17_RS02955 at 662.679 kb on - strand at 662.698 kb on + strand at 662.698 kb on + strand at 662.698 kb on + strand at 662.698 kb on + strand at 663.037 kb on - strand, within HER17_RS02960 at 663.150 kb on + strand, within HER17_RS02960 at 663.150 kb on + strand, within HER17_RS02960 at 663.151 kb on - strand, within HER17_RS02960 at 663.185 kb on - strand, within HER17_RS02960 at 663.188 kb on - strand, within HER17_RS02960 at 663.555 kb on - strand at 663.672 kb on - strand, within HER17_RS02965 at 663.672 kb on - strand, within HER17_RS02965 at 663.728 kb on - strand, within HER17_RS02965 at 663.847 kb on - strand, within HER17_RS02965 at 663.847 kb on - strand, within HER17_RS02965 at 663.847 kb on - strand, within HER17_RS02965 at 663.911 kb on - strand, within HER17_RS02965 at 663.911 kb on - strand, within HER17_RS02965 at 664.235 kb on - strand, within HER17_RS02965 at 664.255 kb on - strand, within HER17_RS02965 at 664.426 kb on - strand, within HER17_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 661,745 + HER17_RS02950 0.32 -2.2 661,799 + HER17_RS02950 0.39 -2.1 661,850 + HER17_RS02950 0.45 -2.6 661,851 - HER17_RS02950 0.45 -1.7 661,858 + HER17_RS02950 0.46 -3.7 661,858 + HER17_RS02950 0.46 -0.5 661,858 + HER17_RS02950 0.46 -0.7 661,858 + HER17_RS02950 0.46 -3.1 661,858 + HER17_RS02950 0.46 -2.1 661,859 - HER17_RS02950 0.46 -0.7 661,859 - HER17_RS02950 0.46 -1.0 661,859 - HER17_RS02950 0.46 -0.6 661,859 - HER17_RS02950 0.46 -2.5 661,859 - HER17_RS02950 0.46 -2.4 661,859 - HER17_RS02950 0.46 -0.4 661,859 - HER17_RS02950 0.46 -2.9 661,859 - HER17_RS02950 0.46 -1.6 661,882 + HER17_RS02950 0.48 -1.5 662,020 - HER17_RS02950 0.64 -4.1 662,084 + HER17_RS02950 0.72 -1.3 662,235 - HER17_RS02950 0.90 -2.3 662,268 + -0.5 662,314 + -0.4 662,319 - -0.7 662,324 + -1.3 662,324 + -2.2 662,325 - +0.5 662,325 - -2.0 662,328 + -3.5 662,328 + -3.7 662,329 - -1.1 662,329 - -1.4 662,329 - -0.5 662,347 + -2.5 662,404 + HER17_RS02955 0.20 -2.3 662,404 + HER17_RS02955 0.20 -2.3 662,405 - HER17_RS02955 0.21 -1.1 662,441 + HER17_RS02955 0.30 -1.9 662,442 - HER17_RS02955 0.30 +0.1 662,458 + HER17_RS02955 0.35 -1.1 662,459 - HER17_RS02955 0.35 -0.9 662,459 - HER17_RS02955 0.35 -0.6 662,459 - HER17_RS02955 0.35 -1.5 662,460 + HER17_RS02955 0.35 -3.0 662,461 - HER17_RS02955 0.35 -1.2 662,505 - HER17_RS02955 0.47 +0.7 662,605 + HER17_RS02955 0.74 -1.9 662,613 + HER17_RS02955 0.76 -1.7 662,614 - HER17_RS02955 0.76 +0.2 662,679 - +1.3 662,698 + -1.4 662,698 + -1.8 662,698 + -1.2 662,698 + -1.2 663,037 - HER17_RS02960 0.39 -1.4 663,150 + HER17_RS02960 0.53 -1.3 663,150 + HER17_RS02960 0.53 -0.1 663,151 - HER17_RS02960 0.53 +0.5 663,185 - HER17_RS02960 0.57 -2.2 663,188 - HER17_RS02960 0.58 -2.2 663,555 - +1.8 663,672 - HER17_RS02965 0.14 -3.5 663,672 - HER17_RS02965 0.14 -1.4 663,728 - HER17_RS02965 0.20 -1.9 663,847 - HER17_RS02965 0.32 -1.6 663,847 - HER17_RS02965 0.32 -0.7 663,847 - HER17_RS02965 0.32 -1.5 663,911 - HER17_RS02965 0.38 -1.6 663,911 - HER17_RS02965 0.38 -2.9 664,235 - HER17_RS02965 0.71 -1.1 664,255 - HER17_RS02965 0.73 -2.9 664,426 - HER17_RS02965 0.90 -1.7
Or see this region's nucleotide sequence