Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01880

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS01875 and HER17_RS01880 are separated by 206 nucleotidesHER17_RS01880 and HER17_RS01885 are separated by 80 nucleotides HER17_RS01875: HER17_RS01875 - ABC transporter ATP-binding protein, at 439,481 to 440,257 _RS01875 HER17_RS01880: HER17_RS01880 - peptidylprolyl isomerase A, at 440,464 to 441,048 _RS01880 HER17_RS01885: HER17_RS01885 - pectate lyase, at 441,129 to 442,406 _RS01885 Position (kb) 440 441 442Strain fitness (log2 ratio) -2 -1 0 1 2at 439.495 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.544 kb on + strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.545 kb on - strandat 439.576 kb on + strand, within HER17_RS01875at 439.621 kb on - strand, within HER17_RS01875at 439.641 kb on + strand, within HER17_RS01875at 439.641 kb on + strand, within HER17_RS01875at 439.641 kb on + strand, within HER17_RS01875at 439.642 kb on - strand, within HER17_RS01875at 439.645 kb on + strand, within HER17_RS01875at 439.645 kb on + strand, within HER17_RS01875at 439.645 kb on + strand, within HER17_RS01875at 439.646 kb on - strand, within HER17_RS01875at 439.646 kb on - strand, within HER17_RS01875at 439.646 kb on - strand, within HER17_RS01875at 439.669 kb on + strand, within HER17_RS01875at 439.669 kb on + strand, within HER17_RS01875at 439.670 kb on - strand, within HER17_RS01875at 439.768 kb on + strand, within HER17_RS01875at 439.774 kb on - strand, within HER17_RS01875at 440.055 kb on - strand, within HER17_RS01875at 440.121 kb on - strand, within HER17_RS01875at 440.121 kb on - strand, within HER17_RS01875at 440.121 kb on - strand, within HER17_RS01875at 440.125 kb on + strand, within HER17_RS01875at 440.125 kb on + strand, within HER17_RS01875at 440.130 kb on + strand, within HER17_RS01875at 440.131 kb on - strand, within HER17_RS01875at 440.184 kb on - strandat 440.216 kb on + strandat 440.255 kb on + strandat 440.256 kb on - strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.259 kb on + strandat 440.260 kb on - strandat 440.260 kb on - strandat 440.263 kb on + strandat 440.263 kb on + strandat 440.264 kb on - strandat 440.322 kb on + strandat 440.369 kb on + strandat 440.371 kb on + strandat 440.372 kb on - strandat 440.372 kb on - strandat 440.416 kb on + strandat 440.417 kb on - strandat 440.425 kb on + strandat 440.475 kb on + strandat 440.475 kb on + strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.476 kb on - strandat 440.499 kb on + strandat 440.639 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.657 kb on - strand, within HER17_RS01880at 440.695 kb on - strand, within HER17_RS01880at 440.695 kb on - strand, within HER17_RS01880at 440.777 kb on + strand, within HER17_RS01880at 440.777 kb on + strand, within HER17_RS01880at 440.778 kb on - strand, within HER17_RS01880at 440.778 kb on - strand, within HER17_RS01880at 440.847 kb on + strand, within HER17_RS01880at 440.847 kb on + strand, within HER17_RS01880at 440.847 kb on + strand, within HER17_RS01880at 440.939 kb on + strand, within HER17_RS01880at 440.943 kb on + strand, within HER17_RS01880at 440.943 kb on + strand, within HER17_RS01880at 440.943 kb on + strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 440.944 kb on - strand, within HER17_RS01880at 441.046 kb on + strandat 441.046 kb on + strandat 441.047 kb on - strandat 441.047 kb on - strandat 441.051 kb on - strandat 441.051 kb on - strandat 441.051 kb on - strandat 441.051 kb on - strandat 441.069 kb on - strandat 441.104 kb on + strandat 441.105 kb on - strandat 441.116 kb on - strandat 441.116 kb on - strandat 441.130 kb on + strandat 441.144 kb on - strandat 441.184 kb on - strandat 441.242 kb on + strandat 441.284 kb on + strand, within HER17_RS01885at 441.390 kb on - strand, within HER17_RS01885at 441.390 kb on - strand, within HER17_RS01885at 441.410 kb on + strand, within HER17_RS01885at 441.410 kb on + strand, within HER17_RS01885at 441.457 kb on + strand, within HER17_RS01885at 441.457 kb on + strand, within HER17_RS01885at 441.513 kb on + strand, within HER17_RS01885at 441.514 kb on - strand, within HER17_RS01885at 441.528 kb on - strand, within HER17_RS01885at 441.646 kb on + strand, within HER17_RS01885at 441.647 kb on - strand, within HER17_RS01885at 441.647 kb on - strand, within HER17_RS01885at 441.647 kb on - strand, within HER17_RS01885at 441.699 kb on - strand, within HER17_RS01885at 441.719 kb on - strand, within HER17_RS01885at 441.719 kb on - strand, within HER17_RS01885at 441.738 kb on + strand, within HER17_RS01885at 441.738 kb on + strand, within HER17_RS01885at 441.739 kb on - strand, within HER17_RS01885at 441.752 kb on + strand, within HER17_RS01885at 441.782 kb on + strand, within HER17_RS01885at 441.782 kb on + strand, within HER17_RS01885at 441.782 kb on + strand, within HER17_RS01885at 441.807 kb on + strand, within HER17_RS01885at 441.807 kb on + strand, within HER17_RS01885at 441.807 kb on + strand, within HER17_RS01885at 441.807 kb on + strand, within HER17_RS01885at 441.808 kb on - strand, within HER17_RS01885at 441.808 kb on - strand, within HER17_RS01885at 441.827 kb on + strand, within HER17_RS01885at 441.920 kb on + strand, within HER17_RS01885at 441.920 kb on + strand, within HER17_RS01885at 441.943 kb on + strand, within HER17_RS01885at 441.943 kb on + strand, within HER17_RS01885at 441.943 kb on + strand, within HER17_RS01885at 441.943 kb on + strand, within HER17_RS01885at 441.944 kb on - strand, within HER17_RS01885at 441.944 kb on - strand, within HER17_RS01885at 441.944 kb on - strand, within HER17_RS01885at 441.944 kb on - strand, within HER17_RS01885at 441.944 kb on - strand, within HER17_RS01885at 441.944 kb on - strand, within HER17_RS01885at 442.025 kb on + strand, within HER17_RS01885at 442.025 kb on + strand, within HER17_RS01885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
439,495 + -0.1
439,544 + +0.2
439,544 + +0.7
439,544 + +0.6
439,544 + -0.4
439,544 + -0.5
439,544 + -0.9
439,544 + +0.4
439,545 - -0.6
439,545 - -0.7
439,545 - +0.4
439,545 - -0.5
439,545 - +2.4
439,545 - -0.3
439,545 - +1.8
439,545 - -0.6
439,576 + HER17_RS01875 0.12 -0.2
439,621 - HER17_RS01875 0.18 +0.1
439,641 + HER17_RS01875 0.21 +0.7
439,641 + HER17_RS01875 0.21 -0.1
439,641 + HER17_RS01875 0.21 +0.2
439,642 - HER17_RS01875 0.21 +0.6
439,645 + HER17_RS01875 0.21 +0.1
439,645 + HER17_RS01875 0.21 +0.2
439,645 + HER17_RS01875 0.21 +0.1
439,646 - HER17_RS01875 0.21 -0.1
439,646 - HER17_RS01875 0.21 +0.1
439,646 - HER17_RS01875 0.21 -0.8
439,669 + HER17_RS01875 0.24 +0.6
439,669 + HER17_RS01875 0.24 -0.7
439,670 - HER17_RS01875 0.24 +0.2
439,768 + HER17_RS01875 0.37 -1.7
439,774 - HER17_RS01875 0.38 +0.9
440,055 - HER17_RS01875 0.74 -0.4
440,121 - HER17_RS01875 0.82 +0.2
440,121 - HER17_RS01875 0.82 -0.6
440,121 - HER17_RS01875 0.82 +0.5
440,125 + HER17_RS01875 0.83 +0.4
440,125 + HER17_RS01875 0.83 +0.3
440,130 + HER17_RS01875 0.84 -0.1
440,131 - HER17_RS01875 0.84 +0.8
440,184 - +0.0
440,216 + +0.9
440,255 + +0.1
440,256 - -0.5
440,259 + -0.1
440,259 + -0.4
440,259 + +0.0
440,259 + -0.2
440,259 + -0.3
440,259 + -0.2
440,260 - -0.1
440,260 - +0.4
440,263 + -0.4
440,263 + +0.6
440,264 - -0.7
440,322 + +0.7
440,369 + -1.0
440,371 + -0.9
440,372 - +1.8
440,372 - +0.4
440,416 + -0.7
440,417 - -1.3
440,425 + +2.2
440,475 + +0.1
440,475 + +0.2
440,476 - +0.5
440,476 - -1.1
440,476 - -0.7
440,476 - -0.4
440,476 - +0.8
440,476 - +1.3
440,499 + -0.3
440,639 - HER17_RS01880 0.30 +0.1
440,657 - HER17_RS01880 0.33 +0.2
440,657 - HER17_RS01880 0.33 -0.1
440,657 - HER17_RS01880 0.33 +0.7
440,657 - HER17_RS01880 0.33 +0.3
440,695 - HER17_RS01880 0.39 +0.2
440,695 - HER17_RS01880 0.39 -0.2
440,777 + HER17_RS01880 0.54 +0.1
440,777 + HER17_RS01880 0.54 +0.3
440,778 - HER17_RS01880 0.54 +1.4
440,778 - HER17_RS01880 0.54 +0.4
440,847 + HER17_RS01880 0.65 +0.4
440,847 + HER17_RS01880 0.65 +0.2
440,847 + HER17_RS01880 0.65 +0.2
440,939 + HER17_RS01880 0.81 -0.5
440,943 + HER17_RS01880 0.82 -0.4
440,943 + HER17_RS01880 0.82 +0.3
440,943 + HER17_RS01880 0.82 -2.2
440,944 - HER17_RS01880 0.82 +0.6
440,944 - HER17_RS01880 0.82 +0.0
440,944 - HER17_RS01880 0.82 +1.2
440,944 - HER17_RS01880 0.82 +0.2
440,944 - HER17_RS01880 0.82 -0.8
440,944 - HER17_RS01880 0.82 +0.5
441,046 + -0.4
441,046 + +0.4
441,047 - +0.1
441,047 - +0.6
441,051 - -0.7
441,051 - -0.2
441,051 - -0.1
441,051 - +0.7
441,069 - -0.4
441,104 + +0.4
441,105 - +0.2
441,116 - -1.3
441,116 - +0.1
441,130 + +0.8
441,144 - +0.1
441,184 - -0.5
441,242 + -0.1
441,284 + HER17_RS01885 0.12 +0.2
441,390 - HER17_RS01885 0.20 +0.8
441,390 - HER17_RS01885 0.20 -1.0
441,410 + HER17_RS01885 0.22 -0.5
441,410 + HER17_RS01885 0.22 +0.3
441,457 + HER17_RS01885 0.26 +0.4
441,457 + HER17_RS01885 0.26 +0.3
441,513 + HER17_RS01885 0.30 +1.4
441,514 - HER17_RS01885 0.30 -0.1
441,528 - HER17_RS01885 0.31 -0.9
441,646 + HER17_RS01885 0.40 +0.3
441,647 - HER17_RS01885 0.41 -0.4
441,647 - HER17_RS01885 0.41 -0.3
441,647 - HER17_RS01885 0.41 -1.9
441,699 - HER17_RS01885 0.45 -0.2
441,719 - HER17_RS01885 0.46 +0.5
441,719 - HER17_RS01885 0.46 -0.4
441,738 + HER17_RS01885 0.48 -0.4
441,738 + HER17_RS01885 0.48 -0.3
441,739 - HER17_RS01885 0.48 -0.8
441,752 + HER17_RS01885 0.49 -0.3
441,782 + HER17_RS01885 0.51 +1.1
441,782 + HER17_RS01885 0.51 +0.2
441,782 + HER17_RS01885 0.51 +0.2
441,807 + HER17_RS01885 0.53 +0.4
441,807 + HER17_RS01885 0.53 -0.0
441,807 + HER17_RS01885 0.53 +0.0
441,807 + HER17_RS01885 0.53 +0.2
441,808 - HER17_RS01885 0.53 -0.6
441,808 - HER17_RS01885 0.53 +0.2
441,827 + HER17_RS01885 0.55 -0.1
441,920 + HER17_RS01885 0.62 +0.3
441,920 + HER17_RS01885 0.62 -0.2
441,943 + HER17_RS01885 0.64 +0.1
441,943 + HER17_RS01885 0.64 -0.5
441,943 + HER17_RS01885 0.64 +0.4
441,943 + HER17_RS01885 0.64 -0.7
441,944 - HER17_RS01885 0.64 +1.4
441,944 - HER17_RS01885 0.64 +1.1
441,944 - HER17_RS01885 0.64 +0.1
441,944 - HER17_RS01885 0.64 -0.4
441,944 - HER17_RS01885 0.64 -0.2
441,944 - HER17_RS01885 0.64 -0.2
442,025 + HER17_RS01885 0.70 -0.2
442,025 + HER17_RS01885 0.70 +1.0

Or see this region's nucleotide sequence